BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493278
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16080.1 | Symbols: | Protein of unknown function (DUF295) ... 640 0.0
AT2G45940.1 | Symbols: | Protein of unknown function (DUF295) ... 300 2e-80
> AT4G16080.1 | Symbols: | Protein of unknown function (DUF295)
| chr4:9101348-9102887 REVERSE LENGTH=1455
Length=1455
Score = 640 bits (346), Expect = 0.0
Identities = 533/614 (87%), Gaps = 49/614 (8%)
Strand=Plus/Plus
Query 1 TTCTTGTGGCTAAGCACTTTGGTCTTAGACCAAGTCAAGAAGGGAC-TTCATT-GTTGAC 58
|||||||||| | |||||||||||||||| | |||||||||||||| ||| || ||||||
Sbjct 34 TTCTTGTGGCCAGGCACTTTGGTCTTAGATCGAGTCAAGAAGGGACTTTC-TTGGTTGAC 92
Query 59 TAACTCGAAAACCC--T-TTT-GTTCTTGTTGATTTTTCACATATCAAAGCAAAGCTATG 114
|||||||||||||| | ||| ||||| |||||| ||||| |||||| |||||||||||
Sbjct 93 TAACTCGAAAACCCTTTCTTTATTTCTTTTTGATTCTTCAC-TATCAACGCAAAGCTATG 151
Query 115 TCGTCTCTGCTTCTCAGCTTCTCTTCCAAGTCCTCTCTCCGCAAACTTGctctggtaaat 174
||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||
Sbjct 152 TCGTCTCTGCTTCTCAGATTCTCTTCCAAGTCCTCTCTCCACAAACTTGCTCTCGTAAAT 211
Query 175 ctcttcaa------tc----tctagtttttgtataatctctg------t-tt--tcttct 215
|||||||| || |||||||||| ||||||||||| | || ||||||
Sbjct 212 CTCTTCAATCTCTCTCTGTTTCTAGTTTTTATATAATCTCTGTTTTATTCTTCCTCTTCT 271
Query 216 tc-----t-t-cttc--t--tcAT-------AGATGTCAA-ACCCTTCGGATGTTCTCCT 256
|| | | |||| | |||| |||||| || ||| || ||||||||||||
Sbjct 272 TCTAATGTCTACTTCTTTACTCATCCCACAGAGATGT-AACACCTTTAGGATGTTCTCCT 330
Query 257 CCTCTACCACCAACCCTTTTTTGCTGCATCGTGCCACCCCTTGTGGTGAAGAAGCCCAAA 316
|||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 331 CCTCAACCACCAACCCTTTTTTGCTGCATCATGCCATCCCTTGTGGTGAAGAAGCCCAAA 390
Query 317 TG-ACAGAGTTCCTCATGTTTGACCCGGCCAAGGAAGAGTATTTCACCATCGCTGATAAG 375
| ||||||||||||||||| ||||||||||| || || |||||||||| || |||||||
Sbjct 391 -GAACAGAGTTCCTCATGTTGGACCCGGCCAAAGAGGATTATTTCACCACCGTTGATAAG 449
Query 376 CCACTTCCCAAAGATTTGATTAAGTCTAATCTAGTGGGAAGTTCCCATGGATGGGGAGTT 435
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 450 CCACTTCCCAAAAATTTGATTAAGTCTAAGCTAGTGGGAAGTTCCCATGGATGGGGTGTT 509
Query 436 TATCTCATCTCCCCTGATTACATACTAATCAGCAACTATCCCTCGAGCTCCAAATCAAAC 495
||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 510 TATCTCAGCTCCCCTGATTACATACTAATCAGCAACTATCCCTCGAGGTCTAAATCAAAT 569
Query 496 CCCAAGATCATTGATCTGCCTCCTCGGCCTAGTCTAAATGGTTCTCAAACGGAATTGGTA 555
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 570 CCCAAGATCATTGATCTGCCTCCTCGTCCTAGTCTAAATGGTTCTCAAACTGAATTGGTA 629
Query 556 AGTGGTGTGGCAAT 569
||||||||||||||
Sbjct 630 AGTGGTGTGGCAAT 643
Score = 451 bits (244), Expect = 6e-126
Identities = 279/296 (94%), Gaps = 1/296 (0%)
Strand=Plus/Plus
Query 566 CAATTACATGGGACGTTCCTGTGAGTATATATACGCCTGGTCGTGAAACTAAAGGGTTCC 625
||| ||||||||||| ||| |||||||||||||||||||||| || | | | |||||||
Sbjct 683 CAAATACATGGGACG-TCCGGTGAGTATATATACGCCTGGTCAAGACAGTCAGGGGTTCC 741
Query 626 TCCTGGCAATGTCTACTAGATTATTCGATTATTTTGAGCAATCCAAGTTGATGTATTCCA 685
|||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 742 TCCTTGCTATGTCCACTAGATTATTCGATTATTTTGAGCAATCTAAGTTGATGTATTCCA 801
Query 686 AGAGAGATCAAAGATTCTACATGCCAAGTTCTGGTGGCCACCACTTGTGGTCTTGGGTTG 745
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 AGAGAGATCAAAGGTTCTACATGCCAAGTTCTGGTGGCCACCACTTGTGGTCTTGGGTTG 861
Query 746 GTCTCCCATCCACCACACCTCAGTACCATGAGTTAAAGTTTCAAAACCTTCCTCAGTTTT 805
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 862 GTCTCCCATCCACCACGCCTCAGTACCATGAGTTAAAGTTTCATAACCTTCCTCAGTTTT 921
Query 806 CGCATTCCGAGTTGCAGCTTTTCGATTCTTGTTACAGGACACACGAGCTTGTGGAG 861
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 922 CGCATTCCGAGTTGCAGCTTTTCGATTCTTGTTACAGGGCACACGAGCTTGTGGAG 977
Score = 324 bits (175), Expect = 1e-87
Identities = 236/263 (90%), Gaps = 13/263 (5%)
Strand=Plus/Plus
Query 891 TTCAATTGTGTTTAGAGAAGAGGAAGATATGAACATGTGTTACACAGAAGACATTGGTGA 950
||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1068 TTC-ATGGTGTTTAGAGAAGAGGAAGACATGAACATGTGTTACACAGAAGACATTGGTGA 1126
Query 951 TCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAAGCCAGCTCATTCCCGGG 1010
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1127 TCTCTGCATATTCCTCGGCAACAACGAGCCTTTTTGTGTCAAGGCCAGCTCATTCCCGGG 1186
Query 1011 CCTAAAACCTAACTCCATCTATTTCCTCGGTGAAGGCTATGGTGAAGGCTACGGTGTTTA 1070
||||| ||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 1187 ACTAAACCCTAATTCCATCTATTTCCTCGGTGAAGGCTA---------C---GGTGTTTA 1234
Query 1071 CGATATCGCCACTAAAACCCCACGTTCCTTCACACCCAAGTCTACACCAAATTGCTGTTC 1130
||||||||||||| | ||||||||||||||||||||||||||||||||| || || ||
Sbjct 1235 TGATATCGCCACTAGATCCCCACGTTCCTTCACACCCAAGTCTACACCAAGTTCCTCCTC 1294
Query 1131 GGAACAAATAGTCCTCCCTTACT 1153
|||||||||||||||||||||||
Sbjct 1295 GGAACAAATAGTCCTCCCTTACT 1317
> AT2G45940.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:18903013-18904325 FORWARD LENGTH=1222
Length=1222
Score = 300 bits (162), Expect = 2e-80
Identities = 204/224 (91%), Gaps = 3/224 (1%)
Strand=Plus/Plus
Query 891 TTCAATTGTGTTTAGAGAAGAGGAAGATATGAACATGTGTTACACAGAAGACATTGGTGA 950
||| || ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 770 TTC-ATGGTGTTTAGAGAGGAGGAGGATATGAACATGTGTTACACACAAGACATTGGTGA 828
Query 951 TCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAAGCCAGCTCATTCCCGGG 1010
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 829 TCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAGGCCAGTTCATTCCCTGG 888
Query 1011 CCTAAAACCTAACTCCATCTATTTCCTCGGTGAAGGCTATGGTGAAGGCTACGGTGTTTA 1070
|||||| ||||| |||||||||||| | ||||| | |||||||||||||| || |||||
Sbjct 889 CCTAAACCCTAATTCCATCTATTTCATAGGTGACCGTTATGGTGAAGGCTATGGCGTTTA 948
Query 1071 CGATATCGCCACTAAAACCCCACGTTCCTTCACA-CCCAAGTCT 1113
|||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 949 CGATATCGCCACTAGAACCCCACGTTCCTTCA-ATCCCAAGTCT 991
Score = 222 bits (120), Expect = 5e-57
Identities = 219/265 (83%), Gaps = 14/265 (5%)
Strand=Plus/Plus
Query 315 AATGACAGAGTTCCTCATGTTTGACCCGGCCAAGGAAGAGTATTTCACCATCGC-TGATA 373
|||||||||| ||| |||||||||||||||||||||||||||||||||| || | |||||
Sbjct 64 AATGACAGAGCTCCGCATGTTTGACCCGGCCAAGGAAGAGTATTTCACCGTC-CATGATA 122
Query 374 AGCCACTTCCCAAAGATTTGATTAAGTCTAATCTAGTGGGAAGTTCCCATGGATGGGGAG 433
|||||||||||||||| ||| ||||||| | || ||||||||||||||||| |||||||
Sbjct 123 AGCCACTTCCCAAAGAGTTGGTTAAGTCGAGGCTGGTGGGAAGTTCCCATGGTTGGGGAG 182
Query 434 TTTATCTCATCTCCCCTGATTACATACTAATCAGC-A--ACT--A-TCCCTCGAGCTCCA 487
||| ||| ||||||| ||| ||||||||| ||| | ||| | |||||| |||||||
Sbjct 183 TTTTTCTTGGCTCCCCTAATTCCATACTAATTAGCGACTACTGCAATCCCTCCAGCTCCA 242
Query 488 AATCAAACCCCAAGATCATTGATCTGCCTCCTCGGCCT-AGTCTAA-A-TGGTTCTCAAA 544
|||||||||||||||| || ||||||||| ||| | | | || | | || |||||
Sbjct 243 AATCAAACCCCAAGATGATCCCTCTGCCTCCACGGAGTTA-TG-AACACTC-TTGTCAAA 299
Query 545 CGGAATTGGTAAGTGGTGTGGCAAT 569
|||||||| ||||| ||||||||
Sbjct 300 ATGAATTGGTTAGTGGCGTGGCAAT 324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5