BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493278 Length=1155 Score E Sequences producing significant alignments: (Bits) Value AT4G16080.1 | Symbols: | Protein of unknown function (DUF295) ... 640 0.0 AT2G45940.1 | Symbols: | Protein of unknown function (DUF295) ... 300 2e-80 > AT4G16080.1 | Symbols: | Protein of unknown function (DUF295) | chr4:9101348-9102887 REVERSE LENGTH=1455 Length=1455 Score = 640 bits (346), Expect = 0.0 Identities = 533/614 (87%), Gaps = 49/614 (8%) Strand=Plus/Plus Query 1 TTCTTGTGGCTAAGCACTTTGGTCTTAGACCAAGTCAAGAAGGGAC-TTCATT-GTTGAC 58 |||||||||| | |||||||||||||||| | |||||||||||||| ||| || |||||| Sbjct 34 TTCTTGTGGCCAGGCACTTTGGTCTTAGATCGAGTCAAGAAGGGACTTTC-TTGGTTGAC 92 Query 59 TAACTCGAAAACCC--T-TTT-GTTCTTGTTGATTTTTCACATATCAAAGCAAAGCTATG 114 |||||||||||||| | ||| ||||| |||||| ||||| |||||| ||||||||||| Sbjct 93 TAACTCGAAAACCCTTTCTTTATTTCTTTTTGATTCTTCAC-TATCAACGCAAAGCTATG 151 Query 115 TCGTCTCTGCTTCTCAGCTTCTCTTCCAAGTCCTCTCTCCGCAAACTTGctctggtaaat 174 ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| Sbjct 152 TCGTCTCTGCTTCTCAGATTCTCTTCCAAGTCCTCTCTCCACAAACTTGCTCTCGTAAAT 211 Query 175 ctcttcaa------tc----tctagtttttgtataatctctg------t-tt--tcttct 215 |||||||| || |||||||||| ||||||||||| | || |||||| Sbjct 212 CTCTTCAATCTCTCTCTGTTTCTAGTTTTTATATAATCTCTGTTTTATTCTTCCTCTTCT 271 Query 216 tc-----t-t-cttc--t--tcAT-------AGATGTCAA-ACCCTTCGGATGTTCTCCT 256 || | | |||| | |||| |||||| || ||| || |||||||||||| Sbjct 272 TCTAATGTCTACTTCTTTACTCATCCCACAGAGATGT-AACACCTTTAGGATGTTCTCCT 330 Query 257 CCTCTACCACCAACCCTTTTTTGCTGCATCGTGCCACCCCTTGTGGTGAAGAAGCCCAAA 316 |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 331 CCTCAACCACCAACCCTTTTTTGCTGCATCATGCCATCCCTTGTGGTGAAGAAGCCCAAA 390 Query 317 TG-ACAGAGTTCCTCATGTTTGACCCGGCCAAGGAAGAGTATTTCACCATCGCTGATAAG 375 | ||||||||||||||||| ||||||||||| || || |||||||||| || ||||||| Sbjct 391 -GAACAGAGTTCCTCATGTTGGACCCGGCCAAAGAGGATTATTTCACCACCGTTGATAAG 449 Query 376 CCACTTCCCAAAGATTTGATTAAGTCTAATCTAGTGGGAAGTTCCCATGGATGGGGAGTT 435 |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 450 CCACTTCCCAAAAATTTGATTAAGTCTAAGCTAGTGGGAAGTTCCCATGGATGGGGTGTT 509 Query 436 TATCTCATCTCCCCTGATTACATACTAATCAGCAACTATCCCTCGAGCTCCAAATCAAAC 495 ||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 510 TATCTCAGCTCCCCTGATTACATACTAATCAGCAACTATCCCTCGAGGTCTAAATCAAAT 569 Query 496 CCCAAGATCATTGATCTGCCTCCTCGGCCTAGTCTAAATGGTTCTCAAACGGAATTGGTA 555 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 570 CCCAAGATCATTGATCTGCCTCCTCGTCCTAGTCTAAATGGTTCTCAAACTGAATTGGTA 629 Query 556 AGTGGTGTGGCAAT 569 |||||||||||||| Sbjct 630 AGTGGTGTGGCAAT 643 Score = 451 bits (244), Expect = 6e-126 Identities = 279/296 (94%), Gaps = 1/296 (0%) Strand=Plus/Plus Query 566 CAATTACATGGGACGTTCCTGTGAGTATATATACGCCTGGTCGTGAAACTAAAGGGTTCC 625 ||| ||||||||||| ||| |||||||||||||||||||||| || | | | ||||||| Sbjct 683 CAAATACATGGGACG-TCCGGTGAGTATATATACGCCTGGTCAAGACAGTCAGGGGTTCC 741 Query 626 TCCTGGCAATGTCTACTAGATTATTCGATTATTTTGAGCAATCCAAGTTGATGTATTCCA 685 |||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 742 TCCTTGCTATGTCCACTAGATTATTCGATTATTTTGAGCAATCTAAGTTGATGTATTCCA 801 Query 686 AGAGAGATCAAAGATTCTACATGCCAAGTTCTGGTGGCCACCACTTGTGGTCTTGGGTTG 745 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 802 AGAGAGATCAAAGGTTCTACATGCCAAGTTCTGGTGGCCACCACTTGTGGTCTTGGGTTG 861 Query 746 GTCTCCCATCCACCACACCTCAGTACCATGAGTTAAAGTTTCAAAACCTTCCTCAGTTTT 805 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 862 GTCTCCCATCCACCACGCCTCAGTACCATGAGTTAAAGTTTCATAACCTTCCTCAGTTTT 921 Query 806 CGCATTCCGAGTTGCAGCTTTTCGATTCTTGTTACAGGACACACGAGCTTGTGGAG 861 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 922 CGCATTCCGAGTTGCAGCTTTTCGATTCTTGTTACAGGGCACACGAGCTTGTGGAG 977 Score = 324 bits (175), Expect = 1e-87 Identities = 236/263 (90%), Gaps = 13/263 (5%) Strand=Plus/Plus Query 891 TTCAATTGTGTTTAGAGAAGAGGAAGATATGAACATGTGTTACACAGAAGACATTGGTGA 950 ||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1068 TTC-ATGGTGTTTAGAGAAGAGGAAGACATGAACATGTGTTACACAGAAGACATTGGTGA 1126 Query 951 TCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAAGCCAGCTCATTCCCGGG 1010 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1127 TCTCTGCATATTCCTCGGCAACAACGAGCCTTTTTGTGTCAAGGCCAGCTCATTCCCGGG 1186 Query 1011 CCTAAAACCTAACTCCATCTATTTCCTCGGTGAAGGCTATGGTGAAGGCTACGGTGTTTA 1070 ||||| ||||| |||||||||||||||||||||||||| | |||||||| Sbjct 1187 ACTAAACCCTAATTCCATCTATTTCCTCGGTGAAGGCTA---------C---GGTGTTTA 1234 Query 1071 CGATATCGCCACTAAAACCCCACGTTCCTTCACACCCAAGTCTACACCAAATTGCTGTTC 1130 ||||||||||||| | ||||||||||||||||||||||||||||||||| || || || Sbjct 1235 TGATATCGCCACTAGATCCCCACGTTCCTTCACACCCAAGTCTACACCAAGTTCCTCCTC 1294 Query 1131 GGAACAAATAGTCCTCCCTTACT 1153 ||||||||||||||||||||||| Sbjct 1295 GGAACAAATAGTCCTCCCTTACT 1317 > AT2G45940.1 | Symbols: | Protein of unknown function (DUF295) | chr2:18903013-18904325 FORWARD LENGTH=1222 Length=1222 Score = 300 bits (162), Expect = 2e-80 Identities = 204/224 (91%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 891 TTCAATTGTGTTTAGAGAAGAGGAAGATATGAACATGTGTTACACAGAAGACATTGGTGA 950 ||| || ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| Sbjct 770 TTC-ATGGTGTTTAGAGAGGAGGAGGATATGAACATGTGTTACACACAAGACATTGGTGA 828 Query 951 TCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAAGCCAGCTCATTCCCGGG 1010 |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || Sbjct 829 TCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAGGCCAGTTCATTCCCTGG 888 Query 1011 CCTAAAACCTAACTCCATCTATTTCCTCGGTGAAGGCTATGGTGAAGGCTACGGTGTTTA 1070 |||||| ||||| |||||||||||| | ||||| | |||||||||||||| || ||||| Sbjct 889 CCTAAACCCTAATTCCATCTATTTCATAGGTGACCGTTATGGTGAAGGCTATGGCGTTTA 948 Query 1071 CGATATCGCCACTAAAACCCCACGTTCCTTCACA-CCCAAGTCT 1113 |||||||||||||| ||||||||||||||||| | ||||||||| Sbjct 949 CGATATCGCCACTAGAACCCCACGTTCCTTCA-ATCCCAAGTCT 991 Score = 222 bits (120), Expect = 5e-57 Identities = 219/265 (83%), Gaps = 14/265 (5%) Strand=Plus/Plus Query 315 AATGACAGAGTTCCTCATGTTTGACCCGGCCAAGGAAGAGTATTTCACCATCGC-TGATA 373 |||||||||| ||| |||||||||||||||||||||||||||||||||| || | ||||| Sbjct 64 AATGACAGAGCTCCGCATGTTTGACCCGGCCAAGGAAGAGTATTTCACCGTC-CATGATA 122 Query 374 AGCCACTTCCCAAAGATTTGATTAAGTCTAATCTAGTGGGAAGTTCCCATGGATGGGGAG 433 |||||||||||||||| ||| ||||||| | || ||||||||||||||||| ||||||| Sbjct 123 AGCCACTTCCCAAAGAGTTGGTTAAGTCGAGGCTGGTGGGAAGTTCCCATGGTTGGGGAG 182 Query 434 TTTATCTCATCTCCCCTGATTACATACTAATCAGC-A--ACT--A-TCCCTCGAGCTCCA 487 ||| ||| ||||||| ||| ||||||||| ||| | ||| | |||||| ||||||| Sbjct 183 TTTTTCTTGGCTCCCCTAATTCCATACTAATTAGCGACTACTGCAATCCCTCCAGCTCCA 242 Query 488 AATCAAACCCCAAGATCATTGATCTGCCTCCTCGGCCT-AGTCTAA-A-TGGTTCTCAAA 544 |||||||||||||||| || ||||||||| ||| | | | || | | || ||||| Sbjct 243 AATCAAACCCCAAGATGATCCCTCTGCCTCCACGGAGTTA-TG-AACACTC-TTGTCAAA 299 Query 545 CGGAATTGGTAAGTGGTGTGGCAAT 569 |||||||| ||||| |||||||| Sbjct 300 ATGAATTGGTTAGTGGCGTGGCAAT 324 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56676415305 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5