BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493280 Length=1068 Score E Sequences producing significant alignments: (Bits) Value AT4G16060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1243 0.0 > AT4G16060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr4:9094403-9096353 FORWARD LENGTH=1097 Length=1097 Score = 1243 bits (673), Expect = 0.0 Identities = 840/917 (92%), Gaps = 26/917 (3%) Strand=Plus/Plus Query 1 TTCTTCTTCTTCTCCAATGATTGTTCTCTCAGTCTCAGTCTCACTCTCACTCACATCATT 60 ||| ||||| ||||||||||||| ||| ||||| ||||| |||||||||||||||| Sbjct 6 TTCGTCTTCGTCTCCAATGATTG----CTC--TCTCACTCTCAGTCTCACTCACATCATT 59 Query 61 ACCATTCT-CTTACGCGCTTTCCCCGACTACGTGCAAACCACGTGCCTCTCCTCCACGTA 119 |||||||| ||| |||| |||| ||||| |||||||| |||| |||||||||||||||| Sbjct 60 ACCATTCTCCTT-CGCGTTTTCATCGACTCCGTGCAAATCACGCGCCTCTCCTCCACGTA 118 Query 120 GCACCGTCTCGTTAATTTCTTCCAGGAGACGACAGGATCGCCGCCGATCAATTGAGGCTG 179 ||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||||| Sbjct 119 GCACCGTCTCGTTGAGTTCTTCCAGGAGACGACAAGATCGCCGGCGATCAATTGAGGCTA 178 Query 180 TGTCTCGTGATATCCATGGTTCCGATTTGTTGGAATTGGAAGATGAATCTGATTTCGAGA 239 || || | || || | || ||||||||||||||||||| |||||||||| Sbjct 179 TG--TC------T-CA-GG-T--GA-----TGGAATTGGAAGATGAATCCGATTTCGAGA 220 Query 240 AGCTTCTCTCATCTGATAATCGGATCTCCATCACTGGCTTCGGTTCTCTTCTCTCCGAGA 299 ||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 221 AGCTTCTCTCATCGGATAATCGGATCTCGATCACTGGATTCGGTTCTCTTCTCTCCGAGA 280 Query 300 GAAGCGCGAGGAGTACATTTCCAGATTTGGAGAATTTCAGAGTCGCGAAATTGCAAGGAT 359 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 281 GAAGCGCGAGGAGTACATTCCCAGATTTGGAGAATTTCAGAATCGCGAAATTGCAAGGAT 340 Query 360 TCCGACGAGTTTTCGCTCACTCCGCTCCCATCTTCTTCGAGCGTGGAATCGCGAATCCTG 419 || || ||||||||||||| || ||||| ||||||||||||||||| ||||||||||||| Sbjct 341 TCAGAAGAGTTTTCGCTCATTCTGCTCCGATCTTCTTCGAGCGTGGCATCGCGAATCCTG 400 Query 420 TAACTAAGGAGATCTCAAGCTTGAGTGTTGAGCCATGTGAAGGAGAGAGCCTTGTGGTTA 479 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 401 AAACTAAGGAGATCTCAAGCTTGAGTGTTGAGCCATGTGAAGGAGAGAGCCTTGTGGTTA 460 Query 480 CTGTCTTTGAGATCAAAAGCTCAGAGATTCCGGCTTTTATTCGAAGGGAGCTTGAATTCC 539 ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 461 CTGTCTTCGAGATCAAAAGCTCAGAGATTCCGGCTTTTATTGGAAGGGAGCTTGAGTTCC 520 Query 540 GGTTTCTTGCTGTTGTTCCTGAAACATTGGAAGGCAAACCTTACACCAATCCTGCGGTAC 599 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 521 GGTTTCTCGCTGTTGTTCCTGAAACATTGGAAGGCAAACCTTACACCAATTCTGCGGTAC 580 Query 600 TTTGTGCTCGATACAGTGATGAGGAGTTCTTCCAGATTAGATGCAAAGGAAACAAAGACA 659 |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 581 TTTGTGGTCGATACAGTGATGAGGAGTTTTTCCAGATTAGATGCAAAGGAAACAAAGGGA 640 Query 660 TTTACTTTCAACATTATGGAAGATTCAACATCGAGAAGATTTGGCGGGACGACATCTTAC 719 |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| Sbjct 641 TTTACTTTCAACATTATGGAAGATTCAAGATCGATAAGATATGGCGGGACGACATCTTAC 700 Query 720 CTTGTCGTCTCTATCTAAGGCATTGTGTGTTGGCTGCTAAAAACCTAGGAGATGAAGCTT 779 ||||||||||||||||||| || ||||||||||||||||| || || ||||||||||||| Sbjct 701 CTTGTCGTCTCTATCTAAGACACTGTGTGTTGGCTGCTAAGAATCTGGGAGATGAAGCTT 760 Query 780 ACAATAACTTTCTGGACCATACATTCTTGGGAGATCGAAAAACGACCATCAGAGAGTATT 839 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 761 ACAATAACTTTCTGGATCATACATTCTTGGGAGATCGAAAAACAACCATCAGAGAGTATT 820 Query 840 TAAGCAGCACAGGGTCTGGTATCATGGAAGAAGAGCCACCAGAGGCTCTCAAGTCAAGAT 899 |||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||| Sbjct 821 TAAGCAGCACAGGGTCTGGTATCATGGAAGAAGAACCACCGGAGGCTCTAAAGTCTAGAT 880 Query 900 ATGGAGGTTGATCAAAA 916 ||||||||||||||||| Sbjct 881 ATGGAGGTTGATCAAAA 897 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52308967890 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5