BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493280
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1243 0.0
> AT4G16060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 42 Blast hits to 42 proteins in 16 species: Archae - 0;
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr4:9094403-9096353
FORWARD LENGTH=1097
Length=1097
Score = 1243 bits (673), Expect = 0.0
Identities = 840/917 (92%), Gaps = 26/917 (3%)
Strand=Plus/Plus
Query 1 TTCTTCTTCTTCTCCAATGATTGTTCTCTCAGTCTCAGTCTCACTCTCACTCACATCATT 60
||| ||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||||
Sbjct 6 TTCGTCTTCGTCTCCAATGATTG----CTC--TCTCACTCTCAGTCTCACTCACATCATT 59
Query 61 ACCATTCT-CTTACGCGCTTTCCCCGACTACGTGCAAACCACGTGCCTCTCCTCCACGTA 119
|||||||| ||| |||| |||| ||||| |||||||| |||| ||||||||||||||||
Sbjct 60 ACCATTCTCCTT-CGCGTTTTCATCGACTCCGTGCAAATCACGCGCCTCTCCTCCACGTA 118
Query 120 GCACCGTCTCGTTAATTTCTTCCAGGAGACGACAGGATCGCCGCCGATCAATTGAGGCTG 179
||||||||||||| | |||||||||||||||||| |||||||| |||||||||||||||
Sbjct 119 GCACCGTCTCGTTGAGTTCTTCCAGGAGACGACAAGATCGCCGGCGATCAATTGAGGCTA 178
Query 180 TGTCTCGTGATATCCATGGTTCCGATTTGTTGGAATTGGAAGATGAATCTGATTTCGAGA 239
|| || | || || | || ||||||||||||||||||| ||||||||||
Sbjct 179 TG--TC------T-CA-GG-T--GA-----TGGAATTGGAAGATGAATCCGATTTCGAGA 220
Query 240 AGCTTCTCTCATCTGATAATCGGATCTCCATCACTGGCTTCGGTTCTCTTCTCTCCGAGA 299
||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 221 AGCTTCTCTCATCGGATAATCGGATCTCGATCACTGGATTCGGTTCTCTTCTCTCCGAGA 280
Query 300 GAAGCGCGAGGAGTACATTTCCAGATTTGGAGAATTTCAGAGTCGCGAAATTGCAAGGAT 359
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 281 GAAGCGCGAGGAGTACATTCCCAGATTTGGAGAATTTCAGAATCGCGAAATTGCAAGGAT 340
Query 360 TCCGACGAGTTTTCGCTCACTCCGCTCCCATCTTCTTCGAGCGTGGAATCGCGAATCCTG 419
|| || ||||||||||||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct 341 TCAGAAGAGTTTTCGCTCATTCTGCTCCGATCTTCTTCGAGCGTGGCATCGCGAATCCTG 400
Query 420 TAACTAAGGAGATCTCAAGCTTGAGTGTTGAGCCATGTGAAGGAGAGAGCCTTGTGGTTA 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 AAACTAAGGAGATCTCAAGCTTGAGTGTTGAGCCATGTGAAGGAGAGAGCCTTGTGGTTA 460
Query 480 CTGTCTTTGAGATCAAAAGCTCAGAGATTCCGGCTTTTATTCGAAGGGAGCTTGAATTCC 539
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 461 CTGTCTTCGAGATCAAAAGCTCAGAGATTCCGGCTTTTATTGGAAGGGAGCTTGAGTTCC 520
Query 540 GGTTTCTTGCTGTTGTTCCTGAAACATTGGAAGGCAAACCTTACACCAATCCTGCGGTAC 599
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 521 GGTTTCTCGCTGTTGTTCCTGAAACATTGGAAGGCAAACCTTACACCAATTCTGCGGTAC 580
Query 600 TTTGTGCTCGATACAGTGATGAGGAGTTCTTCCAGATTAGATGCAAAGGAAACAAAGACA 659
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 581 TTTGTGGTCGATACAGTGATGAGGAGTTTTTCCAGATTAGATGCAAAGGAAACAAAGGGA 640
Query 660 TTTACTTTCAACATTATGGAAGATTCAACATCGAGAAGATTTGGCGGGACGACATCTTAC 719
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 641 TTTACTTTCAACATTATGGAAGATTCAAGATCGATAAGATATGGCGGGACGACATCTTAC 700
Query 720 CTTGTCGTCTCTATCTAAGGCATTGTGTGTTGGCTGCTAAAAACCTAGGAGATGAAGCTT 779
||||||||||||||||||| || ||||||||||||||||| || || |||||||||||||
Sbjct 701 CTTGTCGTCTCTATCTAAGACACTGTGTGTTGGCTGCTAAGAATCTGGGAGATGAAGCTT 760
Query 780 ACAATAACTTTCTGGACCATACATTCTTGGGAGATCGAAAAACGACCATCAGAGAGTATT 839
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 761 ACAATAACTTTCTGGATCATACATTCTTGGGAGATCGAAAAACAACCATCAGAGAGTATT 820
Query 840 TAAGCAGCACAGGGTCTGGTATCATGGAAGAAGAGCCACCAGAGGCTCTCAAGTCAAGAT 899
|||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||
Sbjct 821 TAAGCAGCACAGGGTCTGGTATCATGGAAGAAGAACCACCGGAGGCTCTAAAGTCTAGAT 880
Query 900 ATGGAGGTTGATCAAAA 916
|||||||||||||||||
Sbjct 881 ATGGAGGTTGATCAAAA 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5