BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493282
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16000.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 776 0.0
> AT4G16000.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G15990.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:9063845-9064481 REVERSE LENGTH=637
Length=637
Score = 776 bits (420), Expect = 0.0
Identities = 561/626 (90%), Gaps = 21/626 (3%)
Strand=Plus/Plus
Query 1 TAAAACAAAACACCTTTCT--TCTCTCCTTTCTGCTTCGATGGCAATGGCTCAAAAGGAT 58
|||||||||| |||||||| || || |||| |||||||||||||||||||||||||||
Sbjct 13 TAAAACAAAATACCTTTCTAATC-CT-CTTTAAGCTTCGATGGCAATGGCTCAAAAGGAT 70
Query 59 AGGAATAGATGGGTCGCTCAAAA--G----GAAATGATCGATAAGCCCCTTCCTTATCGA 112
||||||||||||||||||||||| | |||||||| ||||||| |||||||| |||
Sbjct 71 AGGAATAGATGGGTCGCTCAAAAGGGTTTCGAAATGATTGATAAGCGGCTTCCTTACCGA 130
Query 113 TTCTCACCTGAGACAAC-CATAGAGGAACCGGTTGTTTCTCACCCGGCGAAACCTATTCA 171
|||| |||||| |||| |||| |||||||||| ||||| || | || ||| ||| ||
Sbjct 131 TTCTTACCTGATTCAACTGTTAGA-GAACCGGTTGCTTCTCGCCAGACGGAACATATCCA 189
Query 172 CTTCTTTGGTGGTGACCGTCCTTTTGTTGGAAATCCCAACCCGTTTGAGAGGCCTAAAGG 231
|||||||||||||| ||| |||||||| || ||||||||||||||||||||| | |||||
Sbjct 190 CTTCTTTGGTGGTGCCCGGCCTTTTGTAGGTAATCCCAACCCGTTTGAGAGGTCGAAAGG 249
Query 232 ACGGCGTATTACCTGCGACGAGGCGGTCAGACTCTATGGAGGAGTGCTTATAAAGGAATT 291
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 ACGGCCTATTACCTGCGACGAGGCGGTCAGACTCTATGGAGGAGTGCTTATAAAGGAATT 309
Query 292 TCGTAAATAAGCGGTGTAAACCTCAAGTT-TA---AAGATGCATGGTGAGTTTGTAAATA 347
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 310 TCGTAAATAAGCGGTGTAAACCTCAAGTTATGTTGAAGATGCATGGTGAGTTTGTAAATA 369
Query 348 AGTGTGATAAGTTTTATTTCTGCTTTCGGAAAAAGTGCAGACCAACACATATGCTAAAGC 407
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 370 AGTGTGATACGTTTTATTTCTGCTTTCGGAAAAAGTGCAGACCAACACATATTCTAAAGC 429
Query 408 TTGTTGCCACGGTTTTGACTTAGAATAAGCTTTAGATCATAACCAAGTGTTTGTGTCTGT 467
|||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 430 TTGTTGTAACGGTTTTCACTTAGAATAAGCTTTAGATCACAACCAAGTGTTTGTGTCTGT 489
Query 468 TATATATCTAGCTAGA-GTACTATATGTTGAAGATTACGTAATGTAAAATGTTATGGCGC 526
||| |||||||||||| |||||||||||| ||| ||| |||||||||||||||| || ||
Sbjct 490 TATGTATCTAGCTAGAAGTACTATATGTTAAAGCTTATGTAATGTAAAATGTTACGGTGC 549
Query 527 TAT----GTAAACATATGTGTCTTTGACTCTTTGTAAACATAAATAAGCATGTATTCAAA 582
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 550 TATATATGTAAAGATATGCGTCTTTGACTCTTTGTAAACATAAATAAGCATGTATTTAAA 609
Query 583 GACTTTACTAAGCATGTCATATATGC 608
||||||| ||| ||||||||||||||
Sbjct 610 GACTTTAATAATCATGTCATATATGC 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29286507701
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5