BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493291
Length=914
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15940.1 | Symbols: | Fumarylacetoacetate (FAA) hydrolase f... 1304 0.0
AT3G16700.1 | Symbols: | Fumarylacetoacetate (FAA) hydrolase f... 697 0.0
> AT4G15940.1 | Symbols: | Fumarylacetoacetate (FAA) hydrolase
family | chr4:9038289-9040370 FORWARD LENGTH=948
Length=948
Score = 1304 bits (706), Expect = 0.0
Identities = 843/905 (93%), Gaps = 26/905 (3%)
Strand=Plus/Plus
Query 20 TGTATCGATCAGAAAAATGGCGACGTCGATGATACAGAGGATGTTTAAGCAAGGCACGAA 79
|||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 58 TGTATCGATCAG-AAAATGGCGACGTCGATGATACAGAGGATGTTCAAGCAAGGGACGAA 116
Query 80 GATCGTCTGCGTCGGCCGTAACTACGCCGCTCACGCCAAAGAACTAGGCAACGCCGTTCC 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 117 GATCGTCTGCGTCGGCCGTAACTACGCCGCTCACGCCAAAGAACTAGGCAACGCCGTCCC 176
Query 140 CAAGGAACCAGTTATATTCTTGAAGCCAACATCGTCGTATTTGGAAAATGGAGGAACAAT 199
||||||||||||||||||||||||||||||||| || || || |||||||||||||||||
Sbjct 177 CAAGGAACCAGTTATATTCTTGAAGCCAACATCATCATACTTAGAAAATGGAGGAACAAT 236
Query 200 TGAGATCCCACATCCTTTGGATTCACTTCACCATGAAGTGGAACTTGCTTTAGTGATTGG 259
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 237 TGAGATCCCACATCCTTTGGATTCACTTCACCATGAAGTAGAACTCGCTTTAGTGATTGG 296
Query 260 ACAGAAGGCTAGAGATGTACCTGAATCAATAGCTATGGATTACATTGGAGGATATGCGGT 319
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 297 ACAGAAAGCTAGAGATGTACCTGAATCAATAGCCATGGATTACATTGGAGGATATGCGGT 356
Query 320 TGCTCTTGATATGACGGCTAGGGAACTCCAAGCTTCCGCCAAGGCATCTGGTCTCCCATG 379
||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 357 TGCTCTTGATATGACTGCTAGGGAACTCCAAGCTTCTGCTAAGGCATCTGGTCTCCCATG 416
Query 380 GACGCTTGCTAAAGGACAAGATACCTTCACTCCTATAAGCTCTGTTCTGCCAAAGGCGAT 439
|||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 417 GACGGTTGCGAAAGGACAAGATACCTTCACTCCTATCAGCTCTGTTCTGCCAAAGGCGAT 476
Query 440 GGTGCATGATCCCGATAATCTAGAACTTTGGCTCAAGGTTGATGGTGAAACAAGACAGAA 499
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGTGCGTGATCCCGATAATCTAGAACTTTGGCTCAAGGTTGATGGTGAAACAAGACAGAA 536
Query 500 GGGCTTGACAAAAGATATGATCTTCAAGGTCCCGTACCTCATCAGCTACATAAGTTCTAT 559
||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 537 GGGTTTGACCAAAGATATGATATTCAAGGTCCCCTACCTCATTAGCTACATAAGTTCTAT 596
Query 560 AATGACCCTTTACGAAGGAGACGTCAT-T--ATAGGCACACCAGAAGGTGTTGGACCTGT 616
|||||||||||||| | ||| ||||| | | |||||||||||||||||||||||||||
Sbjct 597 AATGACCCTTTACG--G-AGATGTCATCTTGACAGGCACACCAGAAGGTGTTGGACCTGT 653
Query 617 AAAGATAGGTCAGAAGATAACGGCCGGGATCACCGGTCTATCTGAAGTTCAGTTCGATGT 676
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 654 AAAGATAGGTCAGAAGATAACGGCCGGAATCACCGGTCTATCTGAAGTTCAATTCGATGT 713
Query 677 GGAGAGGCGTGTAAAGCCCTTGAGCTAAGAAGTGGTTTTATTTTTCT--CATACAAAA-T 733
|||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||| |
Sbjct 714 GGAGAGGCGTGTAAAGCCCTTGAGCTAATAAGTGGTTTTATTTATCTTTCATACAAAAAT 773
Query 734 GTCAATTTTATAAAAGCATCTCTAA--TTTTCATCACTTACACTGTGTTTCCTTACACTT 791
||||||||||||||||||||||||| |||||||||||||| |||||||||| | |
Sbjct 774 GTCAATTTTATAAAAGCATCTCTAAAATTTTCATCACTTAC--TGTGTTTCCT-A-A--- 826
Query 792 AGGAAGGGAGAAATAAAACTCGT-ACTCCTTTCATTTGTAATCTCTAAAACAATGGCTCT 850
|||||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||
Sbjct 827 -GGAAGGGAGAAATAAAACTCGTTACTCATTTTATTTGTAATCTCTATAACAATGGCTCT 885
Query 851 AAGACTGGTTTAGATTGTTTATACGGGATGGGAGTATTTCG-AAAGTTGTGATATTTATT 909
||||| |||||| |||||||||| |||| | ||||||| | |||||||||||||||| |
Sbjct 886 AAGACCGGTTTAAATTGTTTATATGGGA-G--AGTATTT-GTAAAGTTGTGATATTTACT 941
Query 910 GTTGG 914
|||||
Sbjct 942 GTTGG 946
> AT3G16700.1 | Symbols: | Fumarylacetoacetate (FAA) hydrolase
family | chr3:5687721-5689719 FORWARD LENGTH=818
Length=818
Score = 697 bits (377), Expect = 0.0
Identities = 582/679 (86%), Gaps = 21/679 (3%)
Strand=Plus/Plus
Query 32 AAAAATGGCGACGTCGATGATACAGAGGA-TGTTTAAGCAAGGCACGAAGATCGTCTGCG 90
|||||||||||| |||||||| |||| || |||| || |||||||| ||||||||| |||
Sbjct 85 AAAAATGGCGACTTCGATGATTCAGA-GATTGTTCAAACAAGGCACAAAGATCGTCGGCG 143
Query 91 TCGGCCGT-AACTACGCCGCTCACGCCAAAGAACTAGGCAACGCCGTTCCC-AAGGAACC 148
| || | | || ||||| |||||||||||||||| ||||| ||| |||| |||| |||
Sbjct 144 TTGGAC-TCAATTACGCTTCTCACGCCAAAGAACTTGGCAATGCC-CTCCCAAAGG-ACC 200
Query 149 AG-TTATATTCTTGAAGCCAACATCGTCGTATTTGGAAAATGGAGGAACAATTGAGATCC 207
| || | ||||| |||||||| |||||||| ||||||| || |||||||| |||||||
Sbjct 201 CGATTGTGTTCTTAAAGCCAACTTCGTCGTACCTGGAAAACGGTGGAACAATAGAGATCC 260
Query 208 CACATCCTTTGGATTCACTTCACCATGAAGTGGAACTTGCTTTAGTGATTGGACAGAAGG 267
||||||| ||||||||||||||||||| |||||||||||| |||| ||||||||||| |
Sbjct 261 CACATCCACTGGATTCACTTCACCATGAGGTGGAACTTGCTGTAGTAATTGGACAGAAAG 320
Query 268 CTAGAGATGTACCTGAATC-AATAGCTATGGATTACATTGGAGGATATGCGGTTGCTCTT 326
| |||||||| || ||| | |||| ||| |||||||||||||||||||| ||||||||
Sbjct 321 CAAGAGATGTCCCAGAA-CGGTTAGCCATGAATTACATTGGAGGATATGCGCTTGCTCTT 379
Query 327 GATATGACGGCTAGGGAACTCCAAGCTTCCGCCAAGGCATCTGGTCTCCCATGGACGCTT 386
|||||||| |||||||||||||||| ||| |||| |||||||||||||||||| ||||||
Sbjct 380 GATATGACTGCTAGGGAACTCCAAGTTTCTGCCATGGCATCTGGTCTCCCATGTACGCTT 439
Query 387 GCTAAAGGACAAGATACCTTCACTCCTATAAGCTCTGTTCTGCCAAAGGCGATGGTGCAT 446
||||||||||| ||||||||||| || || ||||| ||||| |||||||| ||||||| |
Sbjct 440 GCTAAAGGACAGGATACCTTCACCCCCATCAGCTCCGTTCTACCAAAGGCAATGGTGC-T 498
Query 447 -GATCCCGATAATCTAGAACTTTGGCTCAAGGTTGATGGTGAAACAAGACAGAAGGGCTT 505
|||||| |||| || ||||| ||||| ||||| |||| ||| ||||||||||| || ||
Sbjct 499 GGATCCCAATAACCTGGAACTCTGGCTAAAGGTAGATGATGAGACAAGACAGAAAGG-TT 557
Query 506 -GACAAAAGATATGATCTTCAAGGTCCCGTACCTCATCAGCTACATAAGTTCTATAATGA 564
|||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 558 GGACAAAGGATATGATCTTCAAGGTCCCATATCTCATCAGCTACATAAGTTCTGTAATGA 617
Query 565 CCCTTTACGAAGGAGACGTC--ATT-ATAGGCACACCAGAAGGTGTTGGACCTGTAAAGA 621
|||||| | ||||||| ||| ||| | ||| |||||||||||| | |||||||||||||
Sbjct 618 CCCTTTTCAAAGGAGATGTCATATTGACAGGTACACCAGAAGGTATAGGACCTGTAAAGA 677
Query 622 TAGGTCAGAAGATAACGGCCGGGATCACCGGTCTATCTGAAGTTCAGTTCGATGT-GGAG 680
|||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || ||
Sbjct 678 TAGGTCAGAAGATAACCGCCGGAATCACCGGTCTTTCTGAAGTTCAGTTCGACGTCGGT- 736
Query 681 AGGCGTG-TAAAGCCCTTG 698
||||| | ||||||| |||
Sbjct 737 AGGCG-GCTAAAGCCATTG 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44658156683
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5