BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493292

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15930.1 | Symbols:  | Dynein light chain type 1 family prot...   835    0.0  


> AT4G15930.1 | Symbols:  | Dynein light chain type 1 family protein 
| chr4:9036222-9038062 FORWARD LENGTH=731
Length=731

 Score =  835 bits (452),  Expect = 0.0
 Identities = 543/583 (93%), Gaps = 22/583 (4%)
 Strand=Plus/Plus

Query  73   aaaaaaaaaaaTGAGTGACGGGAGGAGGAAGAAGAGTGTTAACGGAGGTGCACCGGCGCA  132
            |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct  113  AAAAAAAAAAATGAGTGACGGGAGGAGGAAGAAGAGCGTGAACGGAGGTGCACCGGCGCA  172

Query  133  AACTATCTCCGATGATCGGAGATCTAGTCTTCCGGAAGTTGAAGCTTCTCCACCGGCTGG  192
            ||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  173  AACAATCTTGGATGATCGGAGATCTAGTCTTCCGGAAGTTGAAGCTTCTCCACCGGCTGG  232

Query  193  GAAACGAGCTGTTATCAAGAGTGCTGATATGAAAGATGATATGCAGAAGGAAGCTATCGA  252
            |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct  233  GAAACGAGCTGTTATCAAGAGTGCCGATATGAAAGATGATATGCAAAAGGAAGCTATCGA  292

Query  253  TATCGCCATCTCCGCATTTGAGAAGTATAGTGTGGAGAAGGATATAGCTGAGAATATAAA  312
             |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  293  AATCGCCATCTCCGCGTTTGAGAAGTACAGTGTGGAGAAGGATATAGCTGAGAATATAAA  352

Query  313  GAAGGAGTTTGACAAGAAACATGGTGCTACTTGGCATTGCATTGTTGGTCGCAACTTTGG  372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  353  GAAGGAGTTTGACAAGAAACATGGTGCTACTTGGCATTGCATTGTTGGTCGCAACTTTGG  412

Query  373  TTCTTATGTAACGCACGAGACAAACCACTTCGTTTACTTCTACCTCGAGCAGAAAGCTGT  432
            ||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct  413  TTCTTATGTAACGCATGAGACAAACCATTTCGTTTACTTCTACCTCGACCAGAAAGCTGT  472

Query  433  TCTGCTCTTCAAGTCGGGTTAAGAATTTGAAAACCAAGAAAGCTCATTGTGATGTTCAGT  492
             |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  473  GCTGCTCTTCAAGTCGGGTTAAGAATTTGAAAACCAAGAAAACTCATTGTGATGTTCAGT  532

Query  493  CCCATTATCATCATCACGTTGTAGTTAGTTTCTTGT--TTTGTATGTATGTGTT------  544
            |||||||||||||||||||||||| |||||||||||  ||||||||||||||||      
Sbjct  533  CCCATTATCATCATCACGTTGTAGCTAGTTTCTTGTAATTTGTATGTATGTGTTGCTTCT  592

Query  545  AA--C------C--AA--A--TTTGGGGAATAAACCCTATGAAAAGTCTTTTAGTACATG  590
            ||  |      |  ||  |  ||||| ||||||||||||| |||||||||||||||||||
Sbjct  593  AAGGCTTTTAACCGAACCAAATTTGGAGAATAAACCCTATAAAAAGTCTTTTAGTACATG  652

Query  591  TCATGCATCTTCAAATGTAAATTTGATTTCACCAGATCTAAAA  633
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct  653  TCATGCATCTTCAAATGTAAATTTGATTTCACCAGATCTAAAA  695



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30542361376


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5