BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493295
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15900.1 | Symbols: PRL1 | pleiotropic regulatory locus 1 | ... 2538 0.0
AT3G16650.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1354 0.0
> AT4G15900.1 | Symbols: PRL1 | pleiotropic regulatory locus 1
| chr4:9023728-9027666 FORWARD LENGTH=1731
Length=1731
Score = 2538 bits (1374), Expect = 0.0
Identities = 1591/1692 (94%), Gaps = 30/1692 (2%)
Strand=Plus/Plus
Query 1 TTCACTTCACTTCTCTTTCTCTCTAAACCCTAAACGAAGAACAATGCCGGCTCCGACGAC 60
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 5 TTCACTTCACTTCTCTTTCTCTCTAAACCCTAAAAGAAGAACGATGCCGGCTCCGACGAC 64
Query 61 GGAGATCGAACCCATCGAAGCACAGTCACTGAAAAAGCTCAGTCTCAAATCCCTCAAACG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 GGAGATCGAACCCATCGAAGCACAGTCACTGAAAAAGCTCAGTCTCAAATCCCTCAAACG 124
Query 121 ATCACTCGAACTTTTCTCTCCCGTCCATGGCCAATTCGCTCCTCCTGACCCTGAAGCCAA 180
|||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 125 ATCACTTGAACTCTTCTCTCCCGTCCATGGCCAATTCCCTCCTCCTGACCCGGAAGCCAA 184
Query 181 GAAGATTCGTCTCAGCCATAAGATGAAAGTTGCGTTTGGAGGTTTAGAACC---TGTGAG 237
| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 185 GCAGATTCGTCTCAGCCATAAGATGAAAGTTGCGTTTGGAGGTGTAGAACCTGTTGTGAG 244
Query 238 TCAACCTCCACGTCAACCTGACCGTAGCAATGAGCAGCCAGGACCTTCAAATGCTCTTGC 297
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 245 TCAACCTCCACGTCAACCTGACCGCATCAATGAGCAGCCAGGACCTTCAAATGCTCTTTC 304
Query 298 CCTTGCAGGTCCTGAAGGGTCCAAGAGTACGCAAAAGGGTACGACAGAGAGTGCTCTTGT 357
||| |||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||
Sbjct 305 CCTCGCAGCTCCTGAAGGGTCTAAGAGTACGCAAAAGGGTGCGACAGAGAGTGCTATTGT 364
Query 358 TGTTGGTCCAAC-TT--T--G--C---A--GCCTAAAGGCTTGAACAATATAGGTTCATC 405
|||||||||||| || | | | | |||||||||||||||| ||| |||||| ||
Sbjct 365 TGTTGGTCCAACTTTACTGCGTCCAATACTGCCTAAAGGCTTGAACTATACAGGTTCCTC 424
Query 406 AGGGAAAAGCACCACCATTATACCTGCAAATGTATCCTCGTATCAAAGAAATCTGTCAAC 465
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 425 AGGGAAGAGCACCACCATTATACCTGCAAATGTATCTTCATATCAAAGAAATCTGTCAAC 484
Query 466 TGCTGCTTTAATGGAGAGAATACCGAGTAGATGGCCTCGGCCAGAGTGGCATGCACCATG 525
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 485 TGCTGCATTAATGGAGAGAATACCAAGTAGATGGCCCCGGCCAGAGTGGCATGCACCATG 544
Query 526 GAAGAATTACAGGGTCATTCAAGGGCACTTGGGTTGGGTCAGATCTGTTGCGTTTGACCC 585
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 545 GAAGAATTACAGGGTCATTCAGGGGCACTTGGGTTGGGTCAGATCTGTTGCGTTTGACCC 604
Query 586 GAGTAATGAATGGTTTTGTACTGGTTCAGCTGATCGTACCATCAAGATATGGGATGTAGC 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GAGTAATGAATGGTTTTGTACTGGTTCAGCTGATCGTACCATCAAGATATGGGATGTAGC 664
Query 646 AACTGGAGTTTTAAAGCTAACACTTACTGGGCATATCGAGCAAGTACGAGGCCTTGCTGT 705
|||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 665 AACTGGAGTTCTGAAGCTAACACTTACTGGGCATATCGAGCAAGTACGAGGCCTCGCTGT 724
Query 706 AAGCAATCGACATACCTATATGTTCTCTGCTGGTGATGACAAGCAAGTCAAATGCTGGGA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 AAGCAATCGACATACCTATATGTTCTCTGCTGGTGATGACAAGCAAGTCAAATGCTGGGA 784
Query 766 CCTTGAGCAGAATAAGGTTATCCGATCTTATCATGGTCACTTGAGTGGTGTCTATTGCTT 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CCTTGAGCAGAATAAGGTTATCCGATCTTATCATGGTCACTTGAGTGGTGTCTATTGCTT 844
Query 826 AGCTCTTCACCCAACTTTGGATGTTTTATTAACAGGGGGGCGAGATTCTGTCTGCAGGGT 885
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 845 AGCTCTGCACCCAACTTTGGATGTTTTATTAACTGGGGGGCGAGACTCTGTCTGCAGGGT 904
Query 886 GTGGGATATTCGTACCAAGATGCAAATTTTTGCACTCTCAGGACATGACAACACCGTTTG 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 GTGGGATATTCGTACCAAGATGCAAATTTTTGCACTCTCAGGACATGACAACACCGTTTG 964
Query 946 TTCTGT-TTTCACTCGTCCAACAGATCCACAAGTTGTCACCGGATCACATGACACGACCA 1004
|||||| ||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 965 TTCTGTATTT-ACTCGTCCAACAGACCCACAAGTTGTCACCGGATCCCATGACACGACCA 1023
Query 1005 TTAAATTTTGGGACCTTCGATATGGAAAAACGATGTCAACGCTAACACATCATAAGAAGT 1064
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1024 TTAAATTTTGGGACCTTCGATATGGAAAAACAATGTCAACGCTAACACATCATAAGAAAT 1083
Query 1065 CTGTCCGAGCAATGACCCTCCATCCTAAAGAGAATGCCTTTGCTTCTGCATCAGCTGACA 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 CTGTCCGAGCAATGACCCTCCATCCTAAAGAGAATGCCTTTGCTTCTGCATCAGCTGACA 1143
Query 1125 ACATCAAGAAATTTAGCCTTCCAAAGGGAGAGTTTTGCCACAACATGCTTTCGCAACAGA 1184
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1144 ACACCAAGAAATTTAGCCTTCCAAAGGGAGAGTTCTGCCACAACATGCTTTCGCAACAGA 1203
Query 1185 AAACCATAATTAATGCAATGGCTGTAAACGAGGATGGTGTAATGGTCACTGGAGGTGACA 1244
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1204 AAACCATAATTAATGCAATGGCTGTAAACGAGGATGGTGTGATGGTCACTGGAGGTGATA 1263
Query 1245 ATGGAAGTATATGGTTCTGGGACTGGAAGAGTGGTCACAGTTTCCAGCAGTCAGAAACTA 1304
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1264 ATGGAAGTATATGGTTCTGGGACTGGAAGAGTGGTCACAGTTTCCAACAGTCAGAAACTA 1323
Query 1305 TTGTACAGCCTGGTTCACTGGAGAGTGAAGCGGGTATATATGCCGCATGTTACGATAACA 1364
| |||||||||||||| |||||||||||||||||||||||||| || ||||| ||||| |
Sbjct 1324 TCGTACAGCCTGGTTCCCTGGAGAGTGAAGCGGGTATATATGCAGCGTGTTATGATAATA 1383
Query 1365 CAGGTTCGAGATTGGTAACATGCGAGGCCGATAAGACGATAAAGATGTGGAAAGAAGATG 1424
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1384 CAGGTTCAAGATTGGTAACATGCGAGGCTGATAAGACGATAAAGATGTGGAAAGAAGATG 1443
Query 1425 AGAATGCAACTCCAGAAACTCATCCTATCAATTTCAAACCACCAAAGGATATTAGGCGCT 1484
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1444 AGAATGCAACTCCAGAAACTCATCCTATCAATTTCAAACCACCAAAGGAGATTAGGCGCT 1503
Query 1485 TCTAATAATAACCTGTATCTGTAACTCAAAGCTCTTGTTGGAATCTCACTAATCTCTTCA 1544
||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 TCTAA-A-TAACTTGTATCTGTAACTCAAAGCTCTTGTTGGAATCTCACTAATCTCTTCA 1561
Query 1545 TGATTCTGTTTTCTGGATAAACTTGTGAAAGTG--CCTT-GTTTTGTGGTGGGGAGaaaa 1601
||||||||||| || ||| ||||| ||| || | |||| |||||||||||||||| |||
Sbjct 1562 TGATTCTGTTTCCTAGATCAACTTTTGAGAGGGGACCTTTGTTTTGTGGTGGGGAGGAAA 1621
Query 1602 aaaaaa-caaaaaaGGGCCATGTACTTTA------TTTGTAATTGATTCTATCAACAATA 1654
|||| | | | ||||| |||| ||||||||| ||||||||||||||
Sbjct 1622 CAAAAGGCCATGTACTTT-ATGTATTTTAAGGGCATTTGTAATTTTTTCTATCAACAATA 1680
Query 1655 ATAGATCATGTA 1666
||||||||||||
Sbjct 1681 ATAGATCATGTA 1692
> AT3G16650.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:5671067-5675324 FORWARD LENGTH=1724
Length=1724
Score = 1354 bits (733), Expect = 0.0
Identities = 1213/1439 (84%), Gaps = 55/1439 (4%)
Strand=Plus/Plus
Query 75 TCGAAGCACAGTCACTGAAAAAGCTCAGTCTCAAATCCCTCAAACGATCAC-TCGAACTT 133
||||| | |||||||||||||| |||||||| ||||| | | |||| | | | ||| ||
Sbjct 95 TCGAAACTCAGTCACTGAAAAAACTCAGTCTAAAATCTGTTAGACGAGCTCGT-GAAATT 153
Query 134 TTCTCTCCCGTCCATGGCCAA-TTCGCTCCTCCTGACCCTG-AAGCCAAGAAG-ATTCGT 190
||||| ||||||||||||||| ||| ||| ||||| |||| ||| ||| ||| |||||
Sbjct 154 TTCTCCCCCGTCCATGGCCAATTTC-CTCAGCCTGATCCTGAAAG-CAA-AAGAATTCGG 210
Query 191 CTCAGCCATAAGATGAAAGTTGCGTTTGGAGGTTTAGAACCTGTGAGTCAA-CCTCCACG 249
||| |||||||||| ||||||| |||||||| ||||||||| ||| || ||| ||||
Sbjct 211 CTCTGCCATAAGATTCAAGTTGCATTTGGAGGCGTAGAACCTGCAAGT-AAGCCTACACG 269
Query 250 TCA-ACCTGACCGTAGCAATGAGCAGCCAGG-ACC-TTCAAATGCTCTTGCCCTTGCAGG 306
| | |||||| || || ||| || | || || || ||| || ||||| ||| ||||
Sbjct 270 T-ATTGCTGACCATAACAGTGAAAAGAC-GGCTCCATTGAAA-GCCCTTGCGCTTCCAGG 326
Query 307 TCCTGAAGGGTCCAA-G-AGTACGCAAAAGGGTACGACAGAGAGTGCTCTT-GTTGTTGG 363
||| |||||||||| | | | || ||||| | | ||||||| ||| || ||||||||
Sbjct 327 TCCAAAAGGGTCCAAGGAACTTCGAAAAAGCG--CAACAGAGAAAGCT-TTAGTTGTTGG 383
Query 364 TCCAACTTTGCAGCCTAA-AGGCTTGAACAATA-TAGGTTCAT-CAGGGAAAAGCACCAC 420
||||||||| | ||| || || ||||||||||| | || | || |||| |||||||| |
Sbjct 384 TCCAACTTTACCGCC-AAGAGACTTGAACAATACT-GG-TAATCCAGGCAAAAGCACGGC 440
Query 421 CATTATACCTGCAAATGTATCCTCGTAT-C-AAAGAAATCTGTCAACTGCTGCTTTAATG 478
|||| | |||||| || ||| | | | | |||||||||||||||||||||||||||||
Sbjct 441 CATTCTTCCTGCACCTGGATCAT--TTTCCGAAAGAAATCTGTCAACTGCTGCTTTAATG 498
Query 479 GAGAGAATACCGAGTAGATGGCCTCGGCCAGAGTGGCATGCACCATGGAAGAATTACAGG 538
|||||||| || ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 499 GAGAGAATGCCTAGTAGATGGCCCCGTCCAGAGTGGCATGCACCATGGAAGAATTACAGG 558
Query 539 GTCATTCAAGGG-CACTTGGGTTGGGTCAGATCTGTTGCGTTTGACCCGAGTAATGAATG 597
|| || |||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 559 GT-GCTCCAGGGACACTTGGGTTGGGTCAGATCTGTTGCGTTTGACCCAAGCAATGAATG 617
Query 598 GTTTTGTACTGGTTCAGCTGATCGTACCATCAAGATATGGGATGTAGCAACTGGAGTT-T 656
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 618 GTTTTGCACTGGTTCAGCTGATCGTACCATCAAGATATGGGATGTAGCGACTGGAGTTCT 677
Query 657 TAAAGCTAACACTTACTGGGCATATCGAGCAAGTACGAGGCCTTGCTGTAAGCAATCGAC 716
||| || ||||||||||| ||||| | ||||||||||||||| |||||||||||| |||
Sbjct 678 GAAA-CTCACACTTACTGGACATATAGGGCAAGTACGAGGCCTCGCTGTAAGCAATAGAC 736
Query 717 ATACCTATATGTTCTCTGCTGGTGATGACAAGCAAGTCAAATGCTGGGACCTTGAGCAGA 776
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 ATACCTATATGTTTTCTGCTGGTGATGACAAGCAAGTCAAATGCTGGGACCTTGAGCAGA 796
Query 777 ATAAGGTTATCCGATCTTATCATGGTCACTTG-AGTGGTGTCTATTGCTTAGCTCTTCAC 835
|||||||||| ||||||||||||||||| ||| | ||| || || || |||||||||||
Sbjct 797 ATAAGGTTATTCGATCTTATCATGGTCATTTGCA-TGGCGTTTACTGTTTAGCTCTTCAT 855
Query 836 CCAACT-TTGGATGTTTTATTAACAGGGGGGCGAGATTCTGTCTGCAGGGTGTGGGATAT 894
|| ||| ||| ||||| || |||| || |||||||| |||||||||||||| ||||||||
Sbjct 856 CCTACTCTTG-ATGTTGTACTAACCGGAGGGCGAGACTCTGTCTGCAGGGTATGGGATAT 914
Query 895 TCGTACCAAGATGCAAATTTTTGCACTCTCAGGACATGACAAC-ACCGTTTGTTCTGTTT 953
||||| |||||||||||||||| |||| || ||||||| | | |||| ||| ||||
Sbjct 915 CCGTACGAAGATGCAAATTTTTGTACTCCCA---CATGACAGCGAT-GTTTTTTCCGTTT 970
Query 954 TCACTCGTCCAACAGATCCACAAGTTGTCACCGGATCACATGACACGACCATTAAATTTT 1013
| | || ||||| |||||||||||| | || || || |||||| | ||||| |||||||
Sbjct 971 TGGCCCGCCCAACTGATCCACAAGTTATTACAGGGTCTCATGACTCAACCATCAAATTTT 1030
Query 1014 GGGACCTTCGATATGGAAAAACGATGTCAACGC-TAAC-ACATCATAAGAAGTCTGTCCG 1071
||||||| |||||||| ||| ||||| |||| | |||| | ||||||||||| |||||||
Sbjct 1031 GGGACCTCCGATATGGCAAATCGATGGCAAC-CATAACGA-ATCATAAGAAGACTGTCCG 1088
Query 1072 AGCAATGACCCTCCATCCTAAAGAGAATGCCTTTGCTTCTGCATCAGCTGACAACATCAA 1131
||||||| | |||||||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct 1089 AGCAATGGCTCTCCATCCGAAAGAGAATGATTTTGTTTCTGCATCAGCTGACAACATCAA 1148
Query 1132 GAAATTTAGCCTTCCAAAGGGAGAGTTTTGCCACAACATGCTTTCGCAACAGAAA-ACCA 1190
||| ||||||||||| ||||||||||||||||||||||||||||| | ||||| | || |
Sbjct 1149 GAAGTTTAGCCTTCCTAAGGGAGAGTTTTGCCACAACATGCTTTCTCTACAGAGAGAC-A 1207
Query 1191 TAATTAATGCAATGGCTGTAAACGAGGATGGTGTAATGGTCACTGGAGGTGACAATGGAA 1250
||||||| ||| ||||||| || |||||||| |||||||||||||||||||| || ||
Sbjct 1208 TAATTAACGCAGTGGCTGTGAATGAGGATGGCGTAATGGTCACTGGAGGTGATAAAGGTG 1267
Query 1251 G-TATATGGTTCTGGGACTGGAAGAGTGGTCACAGTTTCCAGCAGTCAGAAACTATTGTA 1309
| | |||||||||||||||||||||||||||||| |||||| | | ||||||||||||||
Sbjct 1268 GCT-TATGGTTCTGGGACTGGAAGAGTGGTCACAATTTCCAACGGGCAGAAACTATTGTA 1326
Query 1310 CAGCCTGGTTCACTGGAGAGTGAAGCGGGTATATATGCCGCATGTTACGATAACACAGGT 1369
||||||||||| |||||||||||||| ||||||||||| || ||||||||| | || |||
Sbjct 1327 CAGCCTGGTTCGCTGGAGAGTGAAGCAGGTATATATGCAGCGTGTTACGATCAGACGGGT 1386
Query 1370 TCGAGATTGGTAACATGCGAGGCCGATAAGACGATAAAGATGTGGAAAGAAGATGAGAAT 1429
|| || ||||||| || |||| || || || |||||||||||||| ||||| ||| ||
Sbjct 1387 TCAAGGCTGGTAACGTGTGAGGGAGACAAAACAATAAAGATGTGGAAGGAAGACGAGGAT 1446
Query 1430 GCAACTCCAGAAACTCATCCTATCAATTTCAAACCACC-AAAGGATATTAGGCGCTTCT 1487
|||||||| |||||||||||| |||| |||||||| || |||| | || || |||||||
Sbjct 1447 GCAACTCCTGAAACTCATCCTCTCAACTTCAAACCTCCCAAAG-AGATCAGACGCTTCT 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82328893800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5