BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493298
Length=1826
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15880.1 | Symbols: ESD4, ATESD4 | Cysteine proteinases supe... 1812 0.0
> AT4G15880.1 | Symbols: ESD4, ATESD4 | Cysteine proteinases superfamily
protein | chr4:9012645-9016116 FORWARD LENGTH=1913
Length=1913
Score = 1812 bits (981), Expect = 0.0
Identities = 1141/1217 (94%), Gaps = 16/1217 (1%)
Strand=Plus/Plus
Query 621 agaagaagaagaaTCAGCCTTCTTTTTCTTCTGGTGTTACGGATGTTAAGAAAGGGGATA 680
|||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 594 AGAAGAAGAATCTTCAGCCTTCGTTTTCTTCTGGTGTTACTGATGTTAAGAAAGGGGAGA 653
Query 681 ACTTTAGAGTTGAGGATACTAGTATGATGCTGGATTCGTTGTCTTTAGATAGAGATGT-G 739
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 654 ACTTTAGAGTTGAGGATACTAGTATGATGCTGGATTCGTTGTCGTTAGATAGAGATGTCG 713
Query 740 --AGTGATGCTTCGAGTCTTGAAGCTTATAGAAAGCTTATGCAAAGTGCGGAGAGGAGGA 797
| |||||||||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct 714 ATAATGATGCTTCGAGCCTCGAAGCTTATAGAAAGCTTATGCAAAGTGCGGAGAAGAGGA 773
Query 798 ATTCGAAGTTGGAAGCTTTGGGTTTTGAGATTGTGTTGAATGAAAAGCGGTTGTCACAGC 857
|||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 774 ATTCAAAGTTGGAAGCTTTGGGTTTTGAGATTGTGTTGAATGAGAAGAAGTTGTCACTGC 833
Query 858 TGCGTCAGTCTCGCCCGAAGCCTGTGGAAAAACGTGTTGAGGTGCCTCGTGAACCTTTTA 917
|||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 834 TGCGTCAGTCTCGCCCAAAGACTGTGGAAAAGCGTGTTGAGGTGCCTCGTGAACCTTTTA 893
Query 918 TACCTCTCACAGAAGACGAAGAGGCTGAAGTCAACCGTGCCTTTTCTGGGAGAAACAGAA 977
| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 894 TTCCTCTCACAGAAGATGAAGAGGCTGAAGTCTACCGTGCCTTTTCTGGGAGAAATAGAA 953
Query 978 GGAAAGTCTTGGCTACTCATGAAAACTCAAACATTGATATTACTGGAGAAGTTCTACAAT 1037
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 954 GGAAGGTCTTGGCTACTCATGAAAACTCAAACATTGATATTACTGGAGAAGTTCTGCAAT 1013
Query 1038 GCCTTACACCATCTTCATGGCTAAACGACGAGGTTATCAATGTCTACCTTGAACTACTCA 1097
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GCCTTACACCATCTGCATGGCTAAACGACGAGGTTATCAATGTCTACCTTGAACTACTCA 1073
Query 1098 AAGAAAGAGAAACTAGAGAGCCCAAAAAGTATTTGAAGTGTCATTTCTTCAATACAtttt 1157
||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 1074 AAGAAAGAGAAACTAGAGAGCCCAAAAAGTATTTGAAGTGTCACTACTTCAATACCTTTT 1133
Query 1158 tttACAAAAAGCTGGTGAGCGATTCTGGTTATAATTTTAAAGCTGTCAGGAGATGGACTA 1217
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TCTACAAAAAGCTGGTAAGCGATTCTGGTTATAATTTTAAAGCTGTCAGGAGATGGACTA 1193
Query 1218 CGCAGAGAAAGTTGGGATATGCTCTTATTGACTGTGACATGATATTTGTTCCCATCCACA 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 CGCAGAGAAAGTTGGGATATGCTCTTATTGACTGTGACATGATATTTGTTCCCATCCACA 1253
Query 1278 GGGGTGTACATTGGACCTTGGCAGTAATTAACAACAGGGAAAGGAAGCTGTTGTATCTTG 1337
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1254 GGGGTGTGCATTGGACCTTGGCAGTAATTAACAACAGGGAAAGCAAGCTCTTGTATCTTG 1313
Query 1338 ATTCACTGAATGGAGTTGATCCTATGATTTTGAATGCTCTGGCAAAATACATGGGCGACG 1397
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
Sbjct 1314 ATTCACTGAATGGAGTTGATCCTATGATTCTGAATGCTCTGGCAAAATACATGGGTGATG 1373
Query 1398 AAGCGAAGGaaaaaagtggaaaaaaTATTGAA-CTTAATTCGTGGGAGATGGAATTTGTT 1456
|||| || ||||||||||||||||| ||||| || ||||||||||| |||||||||||
Sbjct 1374 AAGCAAATGAAAAAAGTGGAAAAAAGATTGATGCT-AATTCGTGGGACATGGAATTTGTG 1432
Query 1457 GAAGACCTTCCCCAACAAAAGAATGGGTATGACTGTGGAATGTTTATGCTTAAGTACATC 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GAAGACCTTCCCCAACAAAAGAATGGGTATGACTGTGGAATGTTTATGCTTAAGTACATC 1492
Query 1517 GATTTTTTCAGTAGAGGCCTGGGGCTATGTTTCAGCCAGGAACACATGCCATACTTCCGA 1576
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 GATTTTTTCAGCAGAGGCCTGGGGCTATGTTTCAGCCAGGAACACATGCCATACTTCCGA 1552
Query 1577 CTCAGAACAGCTAAAGAGATTCTGAGACTACGAGCTGATTGAAGTTGCTTGAGCTAATTA 1636
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1553 CTCAGAACAGCTAAAGAGATTCTGAGGCTACGAGCTGATTGAAGTTGCTTGTGCTAATG- 1611
Query 1637 ATGTGTTTTCAGCTTTTAGGAATGCTATTTTTGCTTGCCATTGTTTATTTGTTCGAACTT 1696
| | ||||| ||| |||||||| ||||||||| ||||||||||| |||||||| |||||
Sbjct 1612 -T-T-TTTTCGGCTATTAGGAATACTATTTTTGGTTGCCATTGTTGATTTGTTCAAACTT 1668
Query 1697 TAAATCCCACTTCTTTTAGGCAGTGAAGCACTCAGCTTCAATAGCAGAGGTAAACACTGA 1756
||||||||||| ||||||||||||||||||||| |||| || |||||||||||| |||||
Sbjct 1669 TAAATCCCACTCCTTTTAGGCAGTGAAGCACTCGGCTTTAAAAGCAGAGGTAAAAACTGA 1728
Query 1757 GTCAAGCCCAGAGCTCTTAGCTCCTT---TTATTGTAtttttct--tt-tt-ttgttttA 1809
||||||||||||||||||||||| || ||||||||||||| | || || ||||||||
Sbjct 1729 GTCAAGCCCAGAGCTCTTAGCTCGTTCCGTTATTGTATTTTTTTCCTTCTTCTTGTTTTA 1788
Query 1810 AAATGTAGATGAAGCGT 1826
|||||||||||||||||
Sbjct 1789 AAATGTAGATGAAGCGT 1805
Score = 782 bits (423), Expect = 0.0
Identities = 542/596 (91%), Gaps = 21/596 (4%)
Strand=Plus/Plus
Query 1 TTTTCTTCTACAGAACCCTAATTTCACGTTCTAGGTTTCAATATCTCTCTCTTATGATTC 60
|||||||||||||||||||||||||| |||||||| | |||||| ||| |||
Sbjct 15 TTTTCTTCTACAGAACCCTAATTTCATGTTCTAGG--------TGTCTCTCGAATGGTTC 66
Query 61 TCATTTCTTTGATTCCCCAATCTCTAGGGTTTAGTGTTTTACCCAAATTCATACCCTAAT 120
|||| || |||||| | ||||||||||||||||||| || | |||||||| |||||||||
Sbjct 67 TCATCTCATTGATTACTCAATCTCTAGGGTTTAGTGGTTCATCCAAATTCGTACCCTAAT 126
Query 121 GGGTGCCGTAGCGATCAATCGTAAACGCAGCGACGAATCCTTCAATTTC---AATCAACA 177
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 127 GGGTGCCGTAGCGATCAATCGTAAACGCAGCGACGAATCCTTCAATTTCATTAATCAACA 186
Query 178 ATCAACCAACCCTTTACGAAATTCACCGTATTTCCAAGCTTCCAAGAAACGAAGATTCTC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 ATCAACCAACCCTTTACGAAATTCACCGTATTTCCAAGCTTCCAAGAAACGAAGATTCTC 246
Query 238 ATTCGCTATGTCTGAAGATTCAGGTAAGCCAGCTTCTTCGTCTTCAAACCCAACAATCTC 297
||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||
Sbjct 247 ATTCGCTATGTCTGAAGATTCTGGTAAGCCAG------CGTCTTCAAACCCAACAATTTC 300
Query 298 GAGGATTTCAAGGTACCCTGATGCTAAAGCTCCTCTTAGACGAGAAATTCATGCTCCTAG 357
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GAGGATTTCAAGGTACCCTGATGCTAAAGCTCCTCTTAGACGAGAGATTCATGCTCCTAG 360
Query 358 TAGAGGCATTCTTAGATATGGGAAAG-CTAAATCTAACGATTATTGCGAAAAGGACGGAA 416
|||||| |||||||||||||| |||| | |||||||| ||||| ||||||||||||| ||
Sbjct 361 TAGAGGAATTCTTAGATATGG-AAAGGCAAAATCTAATGATTACTGCGAAAAGGACGCAA 419
Query 417 ATTTCTTTGTTCGTAAGTATGATGATGCAAAGAGATCAGCTTTGGAAGCTTTGAGATTTG 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 ATTTCTTTGTTCGTAAGTATGATGATGCAAAGAGATCAGCTTTGGAAGCTTTGAGATTCG 479
Query 477 TTAAGAAAGATAAAGATTTTGTTGATTTGGGTGATGAGGTTGAAAAAGAAGCTGTTGTTT 536
|||| |||| |||||| ||||||||||||||||||||||||||||| || | |||||||
Sbjct 480 TTAATAAAGGTAAAGACTTTGTTGATTTGGGTGATGAGGTTGAAAAGGAGGAAGTTGTTT 539
Query 537 CTGATGATTCAAGTGTTGAAG-AGATTGTAGTTGTTGATTGTGATGATGAGGAGGA 591
||||||||||||||||| ||| | |||| |||| |||||||||||||||| |||||
Sbjct 540 CTGATGATTCAAGTGTTCAAGCA-ATTGAAGTTATTGATTGTGATGATGATGAGGA 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90360981000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5