BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493299
Length=1807
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:90013... 2793 0.0
> AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:9001330-9004734
FORWARD LENGTH=1865
Length=1865
Score = 2793 bits (1512), Expect = 0.0
Identities = 1724/1824 (95%), Gaps = 23/1824 (1%)
Strand=Plus/Plus
Query 1 GGAGAGAAGCTTTTGTCT--CC-GTCA----CACAACTTGTGCTTCCTCTCGTCCTCGTC 53
|||||||||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 1 GGAGAGAAGCTTTTGTCTCACCACTCACCGTCACAACTTGTGCTTCCTCTCGTCCTCGTC 60
Query 54 GCCGTCGCGTCAGAGAGAAAACGATT-AAGC---AGGTATGGGGAGAGATAAAGAGGATA 109
||||| ||||||||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct 61 GCCGT--CGTCAGAGAGAAAACGATTAAAGCTGGTGGTATGGGGAGAGATAAAGAAGATA 118
Query 110 AGACAGAGATTGATTCGGTTGTTCCATGGATGAGAGCTCCGGTTGACGTCAGCAATGTCG 169
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGACAGAGATGGATTCGGTTGTTCCATGGATGAGAGCTCCGGTTGACGTCAGCAATGTCG 178
Query 170 AAAATTGCGCTCTCGAAACCCTCCCTTGCCTTAATCCCAAGTTGAAGAAGGCATTGGAGA 229
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAAACTGCGCTCTCGATACCCTCCCTTGCCTTAATCCCAAGTTGAAGAAGGCATTGGAGA 238
Query 230 ACATGGGCATATCTTCACTTTTTCCAGTGCAAGTTGCAGTTTGGCATGAGACTATAGGGC 289
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 239 ACATGGGCATATCTTCACTATTTCCAGTGCAAGTTGCAGTTTGGCATGAAACTATAGGGC 298
Query 290 CAGGTGGTTTTGAAAGAGACATCTGTGTTAACTCTCCAACAGGAAGTGGAAAGACTCTCT 349
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 CAGGTGGTTTTGAAAGAGACATCTGTGTTAACTCTCCAACAGGAAGTGGAAAGACTCTTT 358
Query 350 CTTATGCTTTACCAATTGTGCAGATCCTTGCATCTCGTCCTGTCAGATGCCTCCGTGCTT 409
||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 359 CTTATGCTTTACCAATTGTGCAGCTCCTTGCATCTCGTCCTGTGAGATGCCTTCGTGCTT 418
Query 410 TAGTCGTATTACCCACTCGTGATTTAGCATTGCAGGTTAAAGATGTGTTTGATGCTATAG 469
|||||||||| || || ||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 419 TAGTCGTATTGCCAACACGTGATTTAGCCTTGCAGGTTAAAGATGTATTTGATGCAATAG 478
Query 470 CGCCAACCGTGGGATTATCTGTTGGCTCAGCTGTGGGTCAATCTTCGATAGCTGGTGAAA 529
| ||| | || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 479 CTCCAGCTGTAGGATTATCTGTTGGCTCAGCTGTGGGTCAATCTTCTATAGCTGGTGAAA 538
Query 530 TCTCACAGCTCATCAAGACACCTAAACTTGATGCAGGAATCTGCTATGATCCCGAGGATC 589
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 539 TCTCACAGCTTATCAAGACACCTAAACTTGATGCGGGAATATGCTATGATCCCGATGATC 598
Query 590 TTTCCCAAAACTTTGAAAGTGCTGTGGACATATTAGTAGCAACACCAGGAAGGCTGATGG 649
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTTCTCAAAACCTTGAAAGTGCTGTGGACATATTAGTAGCAACACCAGGAAGGCTGATGG 658
Query 650 ATCATATCAACAACACCAAGGGCTTTACGCTTGAGCATTTGCGTTACCTTGTTGTTGATG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATCATATCAACAACACCAAGGGCTTTACGCTTGAGCATTTGCGTTACCTTGTTGTTGATG 718
Query 710 AAACTGACAGATTGCTTAGGGAGGCATATCAATCCTGGCTACCAACTGTTCTGCAACTGA 769
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAACCGACAGATTGCTTAGGGAGGCATATCAATCCTGGCTACCAACTGTTCTGCAACTGA 778
Query 770 CTCAGACATCTGACGATGGCCTATTTCCTTCATGTACACCATTTGTTCCTTCCGCTTTTG 829
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 779 CTCAGACATCTGACGATAGCCTATTTCCTTCATTTACACCATTTGTTCCTTCCGCTTTTG 838
Query 830 GTTCTCTGCGGACTGTTCGTAGACAAAGTGTAGAGAGAGGTTTCAAGGGTAAACCATACC 889
||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 839 GTTCTCTGCAGACTGTTCGTAGACAAAGTGTGGAGAGAGGATTCAAGGGTAAACCATACC 898
Query 890 CAAGGCTGGTGAAGATGGTATTATCAGCGACATTGACGCAGGATCCAAGCAAGCTTATTC 949
||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 899 CAAGGCTGGTGAAAATGGTACTATCAGCTACATTGACGCAGGATCCAAGCAAGCTTATTC 958
Query 950 AGCTTGACCTGCATCACCCGTTATTCATGACTACTGGAGGAAGCCGATACAGCCTACCTG 1009
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 959 AGCTTGACCTGCATCACCCGTTATTCATGACAACTGGAGGAAGCCGATACAGACTACCTG 1018
Query 1010 AGAAGTTGGAATGTCTTAGACTGATTTGCGAAACCGGAATGAAGCCTGTATATTTGGTTG 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGAAGTTGGAATGTCTTAGACTGATTTGCGAAACCGGAATGAAGCCTGTATATTTGGTTG 1078
Query 1070 CTCTCCTAAAATCATGGGAAGGTGAAAAGTGTATTATTTTCACATCTTCCGTAGAGACAA 1129
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1079 CTCTCCTAAAATCATGGGAAGGTGAAAAGTGTATCATTTTCACATCTTCCGTTGAGACAA 1138
Query 1130 CTCGTCGTCTATGCAAGTTACTCAACTTTTTCGGTGACCCAAAAATAAAAGCAAAAGAGT 1189
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1139 CTCGTCGTCTATGCAAGTTACTCAACTTTTTTGGTGACCCAAAAATAAAAGCAAAAGAGT 1198
Query 1190 ATTCAGGTGGTCTTAACCAATCAGTTCGGAGCAAAGAATTAAAGGCCTTTAGAAAAGGTG 1249
||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||||
Sbjct 1199 ATTCAGGTGGTCTTAACCAATCACTTCGGAGCAAAGAACTAAAAGCGTTTAGAAAAGGTG 1258
Query 1250 ATATCCAAGTTCTTGTTGCATCTGATGCTCTAACACGAGGAATGGATGTTAAAGGGGTAA 1309
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1259 ATATCCAAGTTCTTGTTGCATCTGATGCTCTAACACGTGGAATGGATGTTAAAGGGGTAA 1318
Query 1310 CAAATGTCATAAATTATGATATGCCTCCATTTGCAAAGACCTTCATCCATCGTGCTGGAC 1369
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1319 CAAATGTTATTAATTATGATATGCCACCATTTGCAAAGACCTTCATCCATCGTGCTGGAC 1378
Query 1370 GGACAGCTAGAGCAGGCCAGGCTGGCCGGTGCTTCACATTACTGAGTAATCATGAGGTAA 1429
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1379 GGACAGCTAGAGCAGGCCAGGCTGGCCGCTGCTTCACATTGCTGAGTAATCATGAGGTAA 1438
Query 1430 GGCGTTTCTCAAAGCTCCTGAAGAAAGTTGGGAGTGATTCATGTCCTATCTATCCGATCC 1489
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GGCGTTTCTCGAAGCTCCTGGAGAAAGTTGGGAGTGATTCATGTCCTATCTATCCGATCC 1498
Query 1490 AGCCCACTTCATTAGATTCCATTCGTGCCACTTACACACCCGCTCTAGAGAAGCTCAAGG 1549
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CGCCTACTTCATTAGATTCCATTCGTGCCACTTACACACCCGCTCTAGAGAAGCTCAAGG 1558
Query 1550 AGTTGGTGGAGTCAGAAGCACCCAAGAAAGGAAGACAAGCTTTTAGACATAATACAAGAA 1609
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1559 AGTTGGTTGAGTCAGAAGCACCCAAGAAAGGAAGACAAGCTTTTAGACATAATTCAAGAA 1618
Query 1610 CCGGTAACTCCCAAACCAAACTTAACAAACGGAGATCAGAAGCATAGTTCTTCTG-GAT- 1667
| |||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 1619 CGGGTAACTCCCAAACCAAACTTAACAAACCGAGATCAGAAGCATAGTTCTCCTGTGATG 1678
Query 1668 --CCCTCAGTTTGGGATACAAGACAAAGTACGAGTTATTGGGTTTGGATATT-CTTGACG 1724
||||| | | | | | | | ||| |||| |||||||||||||||||||| ||||||
Sbjct 1679 ATCCCTCGGGT-GTG-T-CGGGTCAA-GTACAAGTTATTGGGTTTGGATATTTCTTGACT 1734
Query 1725 TAAAATTGTTCGTTGAGGCGAAGACTCCATTGTATTAATGAAAAACTATAGCATAACGCT 1784
||| |||||||||||||||||||| |||||||||||| ||| |||||| || ||||||||
Sbjct 1735 TAACATTGTTCGTTGAGGCGAAGAATCCATTGTATTACTGAGAAACTACAGTATAACGCT 1794
Query 1785 GACACAAGTCGTCACAAAA-TTTT 1807
||||||| ||||||||||| ||||
Sbjct 1795 GACACAATTCGTCACAAAAATTTT 1818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89407170645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5