BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493301
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15830.1 | Symbols: | ARM repeat superfamily protein | chr4... 1465 0.0
> AT4G15830.1 | Symbols: | ARM repeat superfamily protein | chr4:8995113-8996601
REVERSE LENGTH=1116
Length=1116
Score = 1465 bits (793), Expect = 0.0
Identities = 903/957 (94%), Gaps = 3/957 (0%)
Strand=Plus/Plus
Query 1 AATGGCGTTGAGAAACATTGAAAACGCTCTTCCGATCTCACAAGAACGGCCTAAGAAGCT 60
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 53 AATGGCGTTGAGGAACATTGAAAACGCTCTTCCGATCTCACAGGAACGACCTAAGAAGCT 112
Query 61 GGCTAAACTCTCGAATCAACCGGAGATTGGTTTGAATGACGAAAACAACCCTGTTGTTGT 120
||| |||||||| || ||||||||||||||| | |||||||||||||||||||| | |||
Sbjct 113 GGCCAAACTCTCAAAGCAACCGGAGATTGGTCTAAATGACGAAAACAACCCTGTCGCTGT 172
Query 121 GCCTGAATCGATCGTTGAATACGTTGCTTCTGAGAATCTCGAACCATTTTCAGATCCTGA 180
| ||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 173 GGCTGAATCGACCGTCGAATACGTTGCTTCTGAGAATCTCAAACCATTTTCAGATCCTGA 232
Query 181 ATCCTCTGTCCAGAGATTACTAGAAGAATTAGCATCAAAGGATTGGATTAAAGTATGTGA 240
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 233 ATCTTCTGTCCAGAGATTACTTGAAGAATTAGCATCAAAGGATTGGATTAAAGTATGTGA 292
Query 241 ATCATTGAATAACACAAGGAGATTCGCAGTTTATCACTCTTCTCTGTTGCTACCAATTCT 300
|||||||| |||||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct 293 CTCATTGAACAACACAAGGAGATTTGCAATTCATCACTCTTCTCTGTTGCTACCAATTCT 352
Query 301 AGAAAAGCTTATAGTTGTGATGGTGAAGGCGATGAAAAACCCTAGAAGTGCATTGTGTAA 360
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 353 AGAAAAGCTTATAGTTGTGATGGTGAAGGCGATGAAGAATCCTAGAAGTGCATTGTGCAA 412
Query 361 GACTTCGATTATGACTTGTTCTGATATCTTCATTGCTTATGGAGAAAAGTTGCTGGAAGG 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 413 GACTTCGATTATGACTTGTTCTGATATCTTCACTGCTTATGGAGAAAAGTTGCTGGAAGG 472
Query 421 ACCTCATTTGAAATCAATGGATGATCTGCTGTTGCAGTTGCTGATGAAAGCTTCACAAGA 480
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 473 ACCTCATTTGAAATCTATGGACGATCTGCTGTTGCAGTTGCTGATGAAAGCTTCACAAGA 532
Query 481 TAAGAAGTTTGTGTGTGAAGAAGCAGACAAAGCTCTGAACACGATGGTTAACTCGGTGGC 540
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 533 CAAGAAGTTTGTGTGTGAAGAAGCAGAGAAAGCGCTGAACACGATGGTTAACTCGGTGGC 592
Query 541 TCGCTTGCCGCTTCTGCGTAAGCTTCAGACTTATGTCCGTCACAGTAACCCTCGTGTCAG 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 593 TCGCTTGCCGCTTCTGCGTAAGCTTCAGAGTTATGTCCGTCACAGTAACCCTCGTGTCAG 652
Query 601 GGCCAAAGCTGCTGTCTCTACCTCCAACTGCGTTTCTAAAATGGAGCTAAATGAAATGGA 660
||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 653 GGCCAAAGCTGCTGTGTCTACTTCCAACTGCGTTTCTAAAATGGAGGTAAATGAAATGGA 712
Query 661 AGAATTTGGGATGGTTCTGCTCGCACAAATGGCTGCGGATTTGTTGAGTGACAAGTTGCC 720
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 713 AGAATTTGGGATGATTCTGCTCGCACAAATGGCTGCGGATCAGTTGAGTGACAAGTTGCC 772
Query 721 AGAGGCAAGGGAAGCCGCGAGGAGTATGGTGAACTCTCTTTTCCAGAAATTTACATggaa 780
||||||||||||||| || ||||||||||||||||| |||||| ||||||||||||||||
Sbjct 773 AGAGGCAAGGGAAGCTGCAAGGAGTATGGTGAACTCGCTTTTCGAGAAATTTACATGGAA 832
Query 781 tgaagaggatgacgaagaaggaagcaagcaagaagcttggaagaagttttgtgagaagaa 840
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TGAAGAAGAAGACGAAGAAGGAAGCAAGCAAGAAGCTTGGAAGAAGTTTTGTGAGAAGAA 892
Query 841 agTAACAGGGCTCAACGCACAAGCCATGATCAAGATTGTCT-CATCTCAATAAATTTCTA 899
||||||||||| || |||||||||||||||||||| || | |||||||||||| ||||
Sbjct 893 TGTAACAGGGCTTAATGCACAAGCCATGATCAAGATCGT-TGCATCTCAATAAAATTCTG 951
Query 900 AAGAGGAAA-TGTTGTTCTCTCTGATTCATGTAAAATACGTTTTTACATGATGTAAA 955
|||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 952 AAGATGAAAATGTTGTTCTCTCTGATTCATGTAAAATACGTTTTTACATGATATAAA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50133678706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5