BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493302 Length=1432 Score E Sequences producing significant alignments: (Bits) Value AT4G15820.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1711 0.0 > AT4G15820.1 | Symbols: | BEST Arabidopsis thaliana protein match is: embryo defective 1703 (TAIR:AT3G61780.1); Has 524 Blast hits to 443 proteins in 102 species: Archae - 0; Bacteria - 13; Metazoa - 196; Fungi - 37; Plants - 43; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink). | chr4:8992970-8995188 FORWARD LENGTH=1549 Length=1549 Score = 1711 bits (926), Expect = 0.0 Identities = 1287/1448 (89%), Gaps = 77/1448 (5%) Strand=Plus/Plus Query 1 ATGGCGGTTTTCCGATGCGCCGTCTTTTTATCTCCTTTGACTTTGTTTCCGTCGTACTCT 60 ||||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||| Sbjct 1 ATGGCAGTTTTCCGATGCGCCGTCTTTTTATCTCCTTCGAGTTTCCTTCCGTCGTACTCC 60 Query 61 ACCGGAAGGAGAGTTTCTTTTAAAGTTATCCGAACCCTAAATCCGAAGCCTCAAGAAACC 120 ||||||||||||||||| | |||||||||||| ||| ||||||| || Sbjct 61 ACCGGAAGGAGAGTTTC-----------T---AACCCTAAATCCAAAG-CTCAAGAGACA 105 Query 121 GTCTTAATCGAAATCGAAACGCCGGAAAATGTTCCTCCAAGCGACGTAGTTTCTAATCAG 180 ||| |||||| |||||||||||||||||||| |||| |||||||||||| | | || Sbjct 106 GTCATAATCGGAATCGAAACGCCGGAAAATGATCCTTCAAGCGACGTAG--T-T--TC-- 158 Query 181 GATGATCATGTAGAGGAGGAGCTTCAAGTCTTAAGTAGCTCGGTTGTGTCAAATGAGCTA 240 || |||||||||| || |||| |||||||||||||||||||||||||||||| || Sbjct 159 --TG---ATGTAGAGGA-GA--TTCAGGTCTTAAGTAGCTCGGTTGTGTCAAATGAGGTA 210 Query 241 AATGGTATATCAAGTAAGCTCTCTCCGAAGTCATTGGCGAAGTATGGATTGTGGTTAATC 300 ||||||||||||| |||| |||||||||||| | | |||||||||||||||||||| ||| Sbjct 211 AATGGTATATCAACTAAGATCTCTCCGAAGTTAGTAGCGAAGTATGGATTGTGGTTGATC 270 Query 301 GGAATATTCGCTTTTCAAACAGTTTGTGCTGTTTTGTTTCTGGGAGACTCAACGAAATCC 360 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 271 GGAATATTCGCTTTTCAAACTGTTTGTGCTGTTTTGTTTCTGGGAGACTCAACGAAATCC 330 Query 361 GAGAATACGCCGGAAATTTCGAGTGGTAGTGGTCAAAATGGGGAAAGAGAGAGCAATGTG 420 ||||| ||||||||| |||| |||| |||| | | || | | | |||| || Sbjct 331 GAGAAAACGCCGGAAGTTTCAAGTGATAGT-G-----A---GG---G-TA-A-CAATTTG 375 Query 421 GTTTCATTAGAGGATCTTGAGATGAATGAGAAGATTGCAGAGATCAGATTGATGGCACGT 480 |||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 376 GTTTTGCTAGAGGATGTTGAAATGAATGAGAAGATTGCAGAGATCAGAATGATGGCACGT 435 Query 481 GAAGCACGTAAAAGTGAGGGTAAG---GAAGAAGAGGATGAAACTGGGATTGATATTGAG 537 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 436 GAAGCACGTAAAAGTGAGGGTAAGCAAGAAGAAGATGATGAAACTGGGATTGATATTGAG 495 Query 538 AAAGAGATAGAAGCAAGATTGTCTAACATGGAGAAACGTTTGAATTCGCAGAGGAAAGGT 597 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 496 AAAGAGATAGAAGCAAGATTGTCTAACATGGAGAAACGGTTGAATTCACAGAGGAAAGGT 555 Query 598 TTAGCGGGATTGCGTGTAGAACCGTTGGATGAATCTGGAAATGATGAGAAAAGTTTGATG 657 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 556 TTGGCGGGATTGCGCGTAGAACCGTTGGATGAATCTGGAAATGATGAGAAAAGTTTGATG 615 Query 658 TTTGAGAAGAAGTATAAGTTTAAAGCCGAGAAGCCACCAACGGGTAATGTGAAAGGCTTT 717 |||||||||||||| ||||||||||| |||||||| || | ||||||||| ||||||||| Sbjct 616 TTTGAGAAGAAGTACAAGTTTAAAGCTGAGAAGCCTCCGATGGGTAATGTAAAAGGCTTT 675 Query 718 GGTGGAAGTAAGGGAAATGATGAGGTTATATCTGGGACTGAGATGACAGGGCAAAATGGG 777 ||||||||||| |||| ||||||| |||| ||||||||||||| ||||||| ||||||| Sbjct 676 GGTGGAAGTAAAGGAAGTGATGAGATTATGTCTGGGACTGAGAAGACAGGGAAAAATGGA 735 Query 778 AGTGTTAGTGAATCACGAGATC-CT--GAAGAA--C--AACAA-AAAGAGGC-AGGGCTT 828 |||| ||||||||||||||| | | |||||| | || || || | | || | Sbjct 736 AGTGCTAGTGAATCACGAGA-CGGTGAGAAGAATCCTGAAGAACAACTA--CAAGAG--- 789 Query 829 TCAG-ATTCCGAGATGGTTTCTGGTGCTGCTCAGGAATCTGAGCTACGACGACCGTCAAA 887 |||| ||||||||| ||||||||||||||||||||||| | ||||||| ||||| Sbjct 790 TCAGTATTCCGAGA-------TGGTGCTGCTCAGGAATCTGAGCAAAGACGACCATCAAA 842 Query 888 CGAAATTAAGAAGTCAAGAAAATCTGGAAACCGAGTGGGCGGAACACAAAATATGGTAGC 947 |||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| Sbjct 843 CGAAGTTAAGAAGTCAAGAAAATCTGGAAATCGAGTGGGCGGAACACCAAATATGAAAGC 902 Query 948 TGGTTCTGGATTTGGTAGCACTTCATTGTCAGGGAAACATGGAGAAGTCAGGAAAGGAAA 1007 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 903 TGGTTCTGGATTTGGTAGCACTTCATTGTCAGAGAAACATGGAGACGTCAGGAAAGGAAA 962 Query 1008 ACCGA-TGAGAAGAGCAAGGGAGAAACAATCTGAGAAAGAGAATAAAATGTGGTGGCTCA 1066 ||| | |||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 963 ACC-ATTGAGAAGAGCAAAGGAGAAACAATCTGAGAAAGAGAATAAATTGTGGTGGCTCA 1021 Query 1067 AGCTTCCCTATGTGCTGAGGATTCTCATGCGTAGTAATATCGATCAAGACATATCTGAGG 1126 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1022 AGCTTCCCTATGTGCTGAGAATTCTCATGCGGAGTAATATCGATCAAGACATATCTGAGG 1081 Query 1127 GATTTTTTA-CTCTGAGGACCGAATCTATGGAACAAAATGAGGGCCAGGTCTCATACATG 1185 ||| ||||| || ||||||||||||||||||||||||||||||| || || ||| | ||| Sbjct 1082 GATATTTTACCT-TGAGGACCGAATCTATGGAACAAAATGAGGGTCAAGTTTCACATATG 1140 Query 1186 ATTGCATTTGAGGATCAAAGTGATGCTAGAAACTTCTCTTATCTGCTTGAATCAGTTTTT 1245 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 ATTGCATTTGAAGATCAAAGTGATGCTAGAAACTTCTCTTATCTGCTTGAATCAGTTTTT 1200 Query 1246 GAAGACTTGGATGATTTCA-TCGCCGATATAGCTCCCGTGTCAACCAAGGATCTTTATGA 1304 ||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| Sbjct 1201 GAAGACTTGGATGATTTCAGT-GCCGATATAGCTCCCGTAACAACCAAGGATCTTTATGA 1259 Query 1305 TGAAGTTAGCTCTGGTGACAAGAATGTGATAGTTGTGAGGAAGAGGCAGCTTACGTTGTA 1364 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 TGAAGTTAGTTCTGGTGGCAAGAATGTGATAGTTGTGAGGAAGAGGCAGCTTACGTTGTA 1319 Query 1365 TGCTGGACAACCATTTGAAGACGTTGAAAGAGCTTTGCGAACTCTGATTCAAGAACAAAG 1424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1320 TGCTGGACAACCATTTGAAGACGTTGAAAGAGCTTTGCGAACTCTGATTCAAGAACGAAG 1379 Query 1425 ATGAAAAA 1432 |||||||| Sbjct 1380 ATGAAAAA 1387 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70581966270 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5