BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493302
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15820.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1711 0.0
> AT4G15820.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: embryo defective 1703 (TAIR:AT3G61780.1); Has 524 Blast
hits to 443 proteins in 102 species: Archae - 0; Bacteria
- 13; Metazoa - 196; Fungi - 37; Plants - 43; Viruses - 3;
Other Eukaryotes - 232 (source: NCBI BLink). | chr4:8992970-8995188
FORWARD LENGTH=1549
Length=1549
Score = 1711 bits (926), Expect = 0.0
Identities = 1287/1448 (89%), Gaps = 77/1448 (5%)
Strand=Plus/Plus
Query 1 ATGGCGGTTTTCCGATGCGCCGTCTTTTTATCTCCTTTGACTTTGTTTCCGTCGTACTCT 60
||||| ||||||||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 1 ATGGCAGTTTTCCGATGCGCCGTCTTTTTATCTCCTTCGAGTTTCCTTCCGTCGTACTCC 60
Query 61 ACCGGAAGGAGAGTTTCTTTTAAAGTTATCCGAACCCTAAATCCGAAGCCTCAAGAAACC 120
||||||||||||||||| | |||||||||||| ||| ||||||| ||
Sbjct 61 ACCGGAAGGAGAGTTTC-----------T---AACCCTAAATCCAAAG-CTCAAGAGACA 105
Query 121 GTCTTAATCGAAATCGAAACGCCGGAAAATGTTCCTCCAAGCGACGTAGTTTCTAATCAG 180
||| |||||| |||||||||||||||||||| |||| |||||||||||| | | ||
Sbjct 106 GTCATAATCGGAATCGAAACGCCGGAAAATGATCCTTCAAGCGACGTAG--T-T--TC-- 158
Query 181 GATGATCATGTAGAGGAGGAGCTTCAAGTCTTAAGTAGCTCGGTTGTGTCAAATGAGCTA 240
|| |||||||||| || |||| |||||||||||||||||||||||||||||| ||
Sbjct 159 --TG---ATGTAGAGGA-GA--TTCAGGTCTTAAGTAGCTCGGTTGTGTCAAATGAGGTA 210
Query 241 AATGGTATATCAAGTAAGCTCTCTCCGAAGTCATTGGCGAAGTATGGATTGTGGTTAATC 300
||||||||||||| |||| |||||||||||| | | |||||||||||||||||||| |||
Sbjct 211 AATGGTATATCAACTAAGATCTCTCCGAAGTTAGTAGCGAAGTATGGATTGTGGTTGATC 270
Query 301 GGAATATTCGCTTTTCAAACAGTTTGTGCTGTTTTGTTTCTGGGAGACTCAACGAAATCC 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 271 GGAATATTCGCTTTTCAAACTGTTTGTGCTGTTTTGTTTCTGGGAGACTCAACGAAATCC 330
Query 361 GAGAATACGCCGGAAATTTCGAGTGGTAGTGGTCAAAATGGGGAAAGAGAGAGCAATGTG 420
||||| ||||||||| |||| |||| |||| | | || | | | |||| ||
Sbjct 331 GAGAAAACGCCGGAAGTTTCAAGTGATAGT-G-----A---GG---G-TA-A-CAATTTG 375
Query 421 GTTTCATTAGAGGATCTTGAGATGAATGAGAAGATTGCAGAGATCAGATTGATGGCACGT 480
|||| |||||||| |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 376 GTTTTGCTAGAGGATGTTGAAATGAATGAGAAGATTGCAGAGATCAGAATGATGGCACGT 435
Query 481 GAAGCACGTAAAAGTGAGGGTAAG---GAAGAAGAGGATGAAACTGGGATTGATATTGAG 537
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 436 GAAGCACGTAAAAGTGAGGGTAAGCAAGAAGAAGATGATGAAACTGGGATTGATATTGAG 495
Query 538 AAAGAGATAGAAGCAAGATTGTCTAACATGGAGAAACGTTTGAATTCGCAGAGGAAAGGT 597
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 496 AAAGAGATAGAAGCAAGATTGTCTAACATGGAGAAACGGTTGAATTCACAGAGGAAAGGT 555
Query 598 TTAGCGGGATTGCGTGTAGAACCGTTGGATGAATCTGGAAATGATGAGAAAAGTTTGATG 657
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TTGGCGGGATTGCGCGTAGAACCGTTGGATGAATCTGGAAATGATGAGAAAAGTTTGATG 615
Query 658 TTTGAGAAGAAGTATAAGTTTAAAGCCGAGAAGCCACCAACGGGTAATGTGAAAGGCTTT 717
|||||||||||||| ||||||||||| |||||||| || | ||||||||| |||||||||
Sbjct 616 TTTGAGAAGAAGTACAAGTTTAAAGCTGAGAAGCCTCCGATGGGTAATGTAAAAGGCTTT 675
Query 718 GGTGGAAGTAAGGGAAATGATGAGGTTATATCTGGGACTGAGATGACAGGGCAAAATGGG 777
||||||||||| |||| ||||||| |||| ||||||||||||| ||||||| |||||||
Sbjct 676 GGTGGAAGTAAAGGAAGTGATGAGATTATGTCTGGGACTGAGAAGACAGGGAAAAATGGA 735
Query 778 AGTGTTAGTGAATCACGAGATC-CT--GAAGAA--C--AACAA-AAAGAGGC-AGGGCTT 828
|||| ||||||||||||||| | | |||||| | || || || | | || |
Sbjct 736 AGTGCTAGTGAATCACGAGA-CGGTGAGAAGAATCCTGAAGAACAACTA--CAAGAG--- 789
Query 829 TCAG-ATTCCGAGATGGTTTCTGGTGCTGCTCAGGAATCTGAGCTACGACGACCGTCAAA 887
|||| ||||||||| ||||||||||||||||||||||| | ||||||| |||||
Sbjct 790 TCAGTATTCCGAGA-------TGGTGCTGCTCAGGAATCTGAGCAAAGACGACCATCAAA 842
Query 888 CGAAATTAAGAAGTCAAGAAAATCTGGAAACCGAGTGGGCGGAACACAAAATATGGTAGC 947
|||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||
Sbjct 843 CGAAGTTAAGAAGTCAAGAAAATCTGGAAATCGAGTGGGCGGAACACCAAATATGAAAGC 902
Query 948 TGGTTCTGGATTTGGTAGCACTTCATTGTCAGGGAAACATGGAGAAGTCAGGAAAGGAAA 1007
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 903 TGGTTCTGGATTTGGTAGCACTTCATTGTCAGAGAAACATGGAGACGTCAGGAAAGGAAA 962
Query 1008 ACCGA-TGAGAAGAGCAAGGGAGAAACAATCTGAGAAAGAGAATAAAATGTGGTGGCTCA 1066
||| | |||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 963 ACC-ATTGAGAAGAGCAAAGGAGAAACAATCTGAGAAAGAGAATAAATTGTGGTGGCTCA 1021
Query 1067 AGCTTCCCTATGTGCTGAGGATTCTCATGCGTAGTAATATCGATCAAGACATATCTGAGG 1126
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1022 AGCTTCCCTATGTGCTGAGAATTCTCATGCGGAGTAATATCGATCAAGACATATCTGAGG 1081
Query 1127 GATTTTTTA-CTCTGAGGACCGAATCTATGGAACAAAATGAGGGCCAGGTCTCATACATG 1185
||| ||||| || ||||||||||||||||||||||||||||||| || || ||| | |||
Sbjct 1082 GATATTTTACCT-TGAGGACCGAATCTATGGAACAAAATGAGGGTCAAGTTTCACATATG 1140
Query 1186 ATTGCATTTGAGGATCAAAGTGATGCTAGAAACTTCTCTTATCTGCTTGAATCAGTTTTT 1245
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ATTGCATTTGAAGATCAAAGTGATGCTAGAAACTTCTCTTATCTGCTTGAATCAGTTTTT 1200
Query 1246 GAAGACTTGGATGATTTCA-TCGCCGATATAGCTCCCGTGTCAACCAAGGATCTTTATGA 1304
||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||
Sbjct 1201 GAAGACTTGGATGATTTCAGT-GCCGATATAGCTCCCGTAACAACCAAGGATCTTTATGA 1259
Query 1305 TGAAGTTAGCTCTGGTGACAAGAATGTGATAGTTGTGAGGAAGAGGCAGCTTACGTTGTA 1364
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TGAAGTTAGTTCTGGTGGCAAGAATGTGATAGTTGTGAGGAAGAGGCAGCTTACGTTGTA 1319
Query 1365 TGCTGGACAACCATTTGAAGACGTTGAAAGAGCTTTGCGAACTCTGATTCAAGAACAAAG 1424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1320 TGCTGGACAACCATTTGAAGACGTTGAAAGAGCTTTGCGAACTCTGATTCAAGAACGAAG 1379
Query 1425 ATGAAAAA 1432
||||||||
Sbjct 1380 ATGAAAAA 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5