BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493304

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15800.1 | Symbols: RALFL33 | ralf-like 33 | chr4:8984858-89...   628    1e-179


> AT4G15800.1 | Symbols: RALFL33 | ralf-like 33 | chr4:8984858-8985405 
FORWARD LENGTH=548
Length=548

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 451/500 (90%), Gaps = 26/500 (5%)
 Strand=Plus/Plus

Query  1    TTTCAAACCTCCaaaaaaaaaaaaGCTCAGAG--A-AAGAAGAAAGAAACAATGAGAGGA  57
            ||| |||||||| ||||||||||| |||||||  | ||||||||||||||||||||||||
Sbjct  8    TTTGAAACCTCC-AAAAAAAAAAACCTCAGAGAAAGAAGAAGAAAGAAACAATGAGAGGA  66

Query  58   CTCTCCACAAAATCCGGTGCGATACTCATCGCAATCCTCACCTTCAACTTCTTATTCGCC  117
            |||||||||||| ||| ||||||| |||||||||| |||||| || ||||||||||||||
Sbjct  67   CTCTCCACAAAACCCGTTGCGATAATCATCGCAATTCTCACCGTCCACTTCTTATTCGCC  126

Query  118  GCCGTAACCTCTCAATCCACCGGATTCACAGGTGATTTCATGCAAATCGATTCAAAATGC  177
            ||||||||||| ||||   ||    || | || |||||| | |  ||||| || ||||||
Sbjct  127  GCCGTAACCTCCCAAT---CC----TC-C-GGCGATTTCGTACCGATCGAGTCGAAATGC  177

Query  178  AACGGTACCATCGCCGAGTGCTCTTTATCAACGGCGGA-G--GAGTTCGAGATGGACTCT  234
            ||||||||||||||||||||||| ||||| |||||||| |  ||||||||||||||||||
Sbjct  178  AACGGTACCATCGCCGAGTGCTCCTTATCCACGGCGGAGGAAGAGTTCGAGATGGACTCT  237

Query  235  GAGATCAACAGGCGTATTTTAGCAACAACGAAGTATATAAGCTACGGTGCGCTGAGGAGA  294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  GAGATCAACAGGCGTATTTTAGCAACAACGAAGTATATAAGCTACGGTGCGCTGAGGAGA  297

Query  295  AACACAGTTCCTTGCTCACGACGCGGCGCATCTTACTACAATTGCCGACGTGGAGCTCAG  354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  AACACAGTTCCTTGCTCACGACGCGGCGCATCTTACTACAATTGCCGACGTGGAGCTCAG  357

Query  355  GCTAATCCTTACTCTCGTGGTTGTAGCGCCATTACTCGTTGCAGGCGATAAtctctctct  414
            |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | |
Sbjct  358  GCTAATCCTTACTCTCGTGGCTGTAGCGCTATTACTCGTTGCAGGCGATAATCTCT-T-T  415

Query  415  ttctctctATGTGTACTTCAAAATTTTTACTCTCAA-TTCTTTTGTTTTAATCTT-ATAC  472
              ||||  ||||  |||| ||||||||||||||||| |||||||||||| || || ||||
Sbjct  416  --CTCT--ATGT--ACTTTAAAATTTTTACTCTCAAATTCTTTTGTTTTGATTTTTATAC  469

Query  473  AATTTTTCAGATTATTATTT  492
            ||||||||||||||||||||
Sbjct  470  AATTTTTCAGATTATTATTT  489



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23459346649


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5