BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493310
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15755.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 800 0.0
> AT4G15755.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr4:8970654-8971523 REVERSE LENGTH=870
Length=870
Score = 800 bits (433), Expect = 0.0
Identities = 586/658 (89%), Gaps = 17/658 (3%)
Strand=Plus/Plus
Query 1 ATGGCGAATCTAACACTAGAGCTAAACATCAACTCCGCAAGTAACCTTTTGAATGTCAAC 60
|||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1 ATGGCGAATCTAACTCTAGAGCTAAACATCAACTCCGCAAGAAACCTTTTAAATGTCAAT 60
Query 61 CTCATCACCAAAATGAATGTTTTCACTGCCATCACCATCAACGGCGAGAATACCCGAAAG 120
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CTCATCACTAAAATGAACGTTTTCACTGCCATCACCATCAACGGCGAGAATACTCGAAAG 120
Query 121 AAACAAAAGGCGAAAACCGCTGTTGATCGCAATGGTGGATCTAACCCGACTTGGAATCAA 180
|||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 121 AAACAAAAGGCGAAAACCACGGTTGATCGTTATGGTGGATCTAACCCGACTTGGAATCAA 180
Query 181 ATCGTCAAATTTTCCGTTAACGAGAGCTTAGCCCGTGACGGTCATTCGACACTTGTAATG 240
| | ||||||||||||| ||||||| | |||||||| ||||||||| ||||||| |||
Sbjct 181 ACCATCAAATTTTCCGTGGACGAGAGGTCAGCCCGTGGTGGTCATTCGTCACTTGTCATG 240
Query 241 AGATTAATCTCCCATCGAGTCTTAGGCAACAAAGAAATCGGAAGAGTTAACATCCCGTTA 300
||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAGTAATCTCTCGTCGAGTCCTAGGCAACAAAGAAATCGGAAGAGTTAACATCCCGTTA 300
Query 301 CTTGAGCTTTTGAATTCAATCACACCATCAATTAACGTTGATGGTAACGGTAACGGTCAG 360
|||||||| |||||| ||| |||||||||| |||||| ||||||||||| | |||
Sbjct 301 CTTGAGCTCTTGAATGCAACCACACCATCATTTAACGGTGATGGTAACG--A----TCAT 354
Query 361 GAGATGAAATTGATGACGTATCAGGTGAGAACTTCGTCAGGTAAACGGTCAGGCTCTTTG 420
||||||||| ||||| |||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 355 GAGATGAAACTGATGTCGTATCAGGTGAGAACTTCGTCGGGTAAACGGTCAGGTTCTTTG 414
Query 421 TCCTTCTCGTACCGGTTTAAAACAACTTTTCCAATGATCACTAACCGGAGTTCTGTA--C 478
|| |||||||||||||||||| ||| | ||||| |||||||||||||||||| |||| |
Sbjct 415 TCTTTCTCGTACCGGTTTAAACCAAATGTTCCAGTGATCACTAACCGGAGTTGTGTAGAC 474
Query 479 -C------ACCATCTCAAATCGAGCAT-CAACCTTCGGCTCCACCTGAATTGCCAATTGA 530
| ||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 475 TCCGCGGCACCATCTCAAATCGAGCATGCA-CCTTCGGCTCCACCCGAATTGCCAATTGA 533
Query 531 GTTTCCTAAGCTGGCTCAGCCTCCGTATCTTCGGAGACATCCTTTCGCCACAGGTTCTAG 590
||||||||||||| ||||||| ||||||||| |||||||||||||||| | ||||||||
Sbjct 534 GTTTCCTAAGCTGCCTCAGCCGCCGTATCTTTTGAGACATCCTTTCGCCGCCGGTTCTAG 593
Query 591 CGGTGATCTTCTTCCAATATCCTATGGTGCTGTGATAACCGAGCAAACCGATCACGCT 648
| ||| ||||||||||||||| ||||| |||| ||| ||||||||||||| |||||||
Sbjct 594 CCGTGGTCTTCTTCCAATATCATATGGCGCTGGGATGACCGAGCAAACCGGTCACGCT 651
Score = 265 bits (143), Expect = 6e-70
Identities = 167/179 (93%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 649 CCACCAACGAAACAAGGATATGGACCGTACGGTTATGTGTCGTCGGGATATCGATACGGA 708
|||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 691 CCACCACCGAGACAAGGATATGGACCGTACGGTTATGTGTCGTCGGGATATGGATACGGA 750
Query 709 AGTCCATCGTATCAACAACGGAAGGAGATAGGGCTTGGACTTGGAGTGGGAGCCGGGCTT 768
||||| |||||||||||||| |||||||| ||| |||| |||||| |||||||||| |||
Sbjct 751 AGTCCCTCGTATCAACAACGTAAGGAGATGGGGATTGGGCTTGGATTGGGAGCCGGACTT 810
Query 769 TTGGGTGGACTAATGGTGGGAGACATTGTGTCTGATGTTGCAAATTGTTATGATCTTTG 827
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 TTTGGTGGATTAATGGTGGGAGACATTGTGTCTGATGTTGCAAATTGTTATGATCTTTG 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40287785894
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5