BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493311
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15740.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 2032 0.0
> AT4G15740.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr4:8964745-8966318 REVERSE LENGTH=1574
Length=1574
Score = 2032 bits (1100), Expect = 0.0
Identities = 1419/1569 (90%), Gaps = 38/1569 (2%)
Strand=Plus/Plus
Query 1 ATGTCCACACATAAATTGTATATAAATATCTTGGTATATTTGAAAAT-TGCGAAGATATA 59
|||||||||||||||||||||||||||||||| | || || ||| ||| |||||| |
Sbjct 1 ATGTCCACACATAAATTGTATATAAATATCTT--TGTA--TGGCAATATGCCAAGATAAA 56
Query 60 ACAAAACAATACTCTCTTGAAAATGTCTTCACCACAGTTGCAAAGCGCCATGGAGAACCC 119
||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 57 ACAAAACAATACTATCTTGAAAATGTCTTCACCACAGTTGCAAAGAGCTATGGAGAATCC 116
Query 120 AACTCTTGAGCTCAAAATTGTATCAGCCAGTGAAGTCAACCATATCGATGCCACGGACAA 179
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 117 AACTCTTGAGCTCAAAATTGTATCAGCTAGTGACGTCAACCATATCGATGCCACGGACAA 176
Query 180 AATGGACGTATACGCGGTCGTTTCAATCAACGGAGACACAACTCAACAGAAACAAGCGGC 239
||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 177 AATGGACGTATACGCAGTCGTTTCAATCAACGGCGACACAACACAACAAAAACAAGCGGC 236
Query 240 CAAAACTCCCATTGATTACGACGGTGGTTCCAATCCAACGTGGAATCACACCGTTAAGTT 299
||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 237 CAAAACTCCCATTGATTACGATGGTGGTTCTAATCCGACGTGGAATCACACCGTTAAGTT 296
Query 300 CTCCGTCAACGAGACAGAAGCCAACGAAGGCCTACTT-ACTATTACGGTCAAGCTATTTA 358
|||||||||||||| ||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 297 CTCCGTCAACGAGAGAGAAGCCAACGAAGGCCTA-TTAACTATAACGGTCAAGCTATTTA 355
Query 359 GCTATTGGCTACAAGGTGATAGTGACCTTTATTTGGGAGAAGTCAACATCTCGGTTCAAG 418
|||| |||||| ||||||||| |||||| |||||||||||||||||| |||||||||| |
Sbjct 356 GCTACTGGCTAGAAGGTGATAATGACCTGTATTTGGGAGAAGTCAACGTCTCGGTTCAGG 415
Query 419 AGCTTCTTGCCTCAAATCCGATTCCACCGTTTACTAACGGTAACGTCAACAAAATGAAGT 478
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 416 ATCTTCTTGCCTCAAATCCGATTCCACCGTTTACTAACGGTAACATCAACAAAATGAAGT 475
Query 479 CAATGACTTGCCCTATCAAGGCCACAGAAGAAAGGACCAACGCAA-GGCTAAGCCTTTCA 537
||||||||||||||||||||||||| ||| |||| |||||| ||| || | |||||||||
Sbjct 476 CAATGACTTGCCCTATCAAGGCCACCGAAAAAAGTACCAACACAACGG-TGAGCCTTTCA 534
Query 538 TACCGGTTTAAACCTGTACCGGTTGAGGAACCTTATCCTCCATCACCGGATAATTCGCCA 597
|||||||||||||||||||||||||||||| ||| ||||| ||||||||| || ||||
Sbjct 535 TACCGGTTTAAACCTGTACCGGTTGAGGAATTTTACCCTCCGTCACCGGATTCTTTGCCA 594
Query 598 TCGATCGGTAAACCCGTTTACCGAGACTTGGATCCAACAAAATTAGGTCAACCTCTCGTA 657
||||| ||||||||||||||||||||| |||||||| |||||||| |||| ||||| |||
Sbjct 595 TCGATTGGTAAACCCGTTTACCGAGACCTGGATCCAGCAAAATTAAGTCAGCCTCTTGTA 654
Query 658 TTTTCCCCTCGGTTTCAATCCACCACGGGGAAGCTTATCCTAGAGCTCGTGATCAAATTC 717
||||| |||||||||||| |||||||| ||| || ||||||||||||||||||||||||
Sbjct 655 TTTTCTCCTCGGTTTCAAGCCACCACGACGAAACTGATCCTAGAGCTCGTGATCAAATTC 714
Query 718 GCCAAGAACATCGAAGATGTCAACGCCTTCTCGTCCATGGACGTATACGCCTCGGTTGCG 777
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 715 GCCAAGAACATCGAAGATGTCAACGCCTTCTCGTCCATGGACGTATACGCTTCGGTTGCG 774
Query 778 ATTCTTAAAGACAGAAAAGTTAAGAATAGGGTCAATACCCCTGTGGCTTTCT-CTGCTTA 836
|||||||| ||||||||||||||||||||| |||| || || |||||||| | | |||||
Sbjct 775 ATTCTTAAGGACAGAAAAGTTAAGAATAGGATCAACACACCGGTGGCTTT-TGCCGCTTA 833
Query 837 CACAAACCCAACGTGGAATCAGAA-GATGAAGTTTTCTCTTGATGAGAAGTCAGCTCAAG 895
||||| |||| ||||||||| || |||||| |||||| |||||||||||||||||||||
Sbjct 834 TACAAATCCAAAGTGGAATCA-AATGATGAAATTTTCTATTGATGAGAAGTCAGCTCAAG 892
Query 896 AAGGGCGTTTGATGCTTCTCGTGGAATTGATGAGCCACCGGCCTTTTCTTGGTGATAAGG 955
||||||| |||||||| || ||||| |||||||||||||||||||| |||||||||||||
Sbjct 893 AAGGGCGGTTGATGCTCCTTGTGGAGTTGATGAGCCACCGGCCTTTCCTTGGTGATAAGG 952
Query 956 AAATTGGATTTGTCAGACTTCCGATGCAACAGTTATTGGGT-TCAAATCCGCCTTATCCG 1014
| ||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 953 AGATTGGATTTGTTAGACTTCCGATGCAACAGTTATTGG-TCTCAAATCCGCCTTATCCG 1011
Query 1015 TTGACCAATAGTGGTGATGCTAACGGTATGAAGTTGGAGACACACGCTTTGACGGGTCCT 1074
|||||| | | ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1012 TTGACCGACAATGGTGATGCTAACGGTATGAAGTTGGAGACACATGCTTTGACGGGTCCT 1071
Query 1075 TATGGaaaaaaaGGTGTCGTGAGCTTCACGTATAGGTTTCTTGCAGATCAAGTTACAAGC 1134
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1072 TATGGAAAAAAAGGTGTCGTGAGCTTCACGTATAGGTTTCTTGCAGAACAAGTTACA-GC 1130
Query 1135 CCAACACCATCCACACCAGGCCAGCCATATATAATGTATTTACCGGTATCGCCTCAGTCA 1194
| | | ||| |||||||||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 1131 --A-C-C-ATCTACACCAGGCCAGCCATATATTATGTATGTACCGGTATCGCCTCAGCCA 1185
Query 1195 TATGCGTCATCGGATAAGATTCAGGTGACCTCGAGTTACGTGACTGTTCAACCAGGGGCT 1254
|| |||||| | ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TACGCGTCACCTGATCAGCTTCAGGTGACCTCGAGTTACGTGACTGTTCAACCAGGGGCT 1245
Query 1255 AATTCTGGGACAAGCAATGGTCTAGTACCAATATATATGCCGCCTACTTATCAATCACAT 1314
||||||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1246 AATTCTGGGCCAAGCAACGGTCTAGTACCAATATTTATGCCGCCTACATATCAATCACAT 1305
Query 1315 GGATACCAACAATATTCACCACGGAA-TCCGAAACCGCGACCGCAGTCGCCACCACAACA 1373
||||||||||||||||||||| |||| || |||| ||| || || || |||||| |||
Sbjct 1306 GGATACCAACAATATTCACCAAGGAAGTC-GAAATCGCAACTACAACCGTCACCACGACA 1364
Query 1374 GTAGCAGCTTCAACCGCTGCGTCTGCATCCGCTCCCGCAGTAATTACCGGATACACAGTC 1433
|| |||||||||||| ||||||||||| |||||| |||||||| |||||||||||||
Sbjct 1365 GTTGCAGCTTCAACCCCTGCGTCTGCAGCCGCTCTCGCAGTAAATACCGGATACACA--- 1421
Query 1434 ACTGAGTCACATGGACACCAACAGGCAA--A-AATCCTTAGCATGATGTGTCGCACCCGt 1490
| | |||||||| |||||||||||| | |||||||||||| |||||||||||||||
Sbjct 1422 A-T----CACATGGATACCAACAGGCAATTACAATCCTTAGCATAATGTGTCGCACCCGT 1476
Query 1491 tttatatttatatgta-ttgggaaat-agtttctttttattttgttccttttttttAATT 1548
||| |||||||||| | |||| || | |||| |||||||||||||||| |||||||||
Sbjct 1477 TTTTTATTTATATG-ACTTGGCTTATCA-TTTCATTTTATTTTGTTCCTTGTTTTTAATT 1534
Query 1549 AGTTTGAAA 1557
|| ||||||
Sbjct 1535 AGCTTGAAA 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5