BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493316

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15715.1 | Symbols:  | Proteinase inhibitor I25, cystatin, c...   538    1e-152


> AT4G15715.1 | Symbols:  | Proteinase inhibitor I25, cystatin, 
conserved region | chr4:8945317-8945934 FORWARD LENGTH=533
Length=533

 Score =  538 bits (291),  Expect = 1e-152
 Identities = 366/400 (92%), Gaps = 13/400 (3%)
 Strand=Plus/Plus

Query  1    GGTTACGATGTTGATTGGAGTAAA-GTTGACTACAACTTCCCTGCCGTCAATTTCGATTG  59
            |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct  15   GGTTACGATGTTGATTGGAGTAAATGTTGACTACAACTTCCCTGCCGTGAATTTCGATTG  74

Query  60   GGGAAGTGATTTTGATGATCAGATGAGCAATGAGGAGTTAATGAAACAGCTCATAAAGAC  119
            ||||| ||||||||||||||| |||| |||| | ||||||||||||| ||||||| ||||
Sbjct  75   GGGAAATGATTTTGATGATCAAATGAACAATAATGAGTTAATGAAACTGCTCATAGAGAC  134

Query  120  TGCCATTGACGAAGAAAACGAAGAAACCGGAACAAAACTTGAGTTCGTCAAGTATGTGAG  179
            ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct  135  TGCCATTGACGAAGAAAACGAAGAAACCGGAACAAGACTTGAGTTTGTCAAGTATGTGAG  194

Query  180  TGCAAATGTACTTGGCGTCCAAGGTTTTTTGTTTTACATAACATTTTGGGCAAAAGATCT  239
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  195  TGCAAATGTACTTGGCGTCCAAGGTTTTTTGTTTTACATAACATTCTGGGCAAAAGATCT  254

Query  240  TTCCTCACCAAATCCAGAGCCACAATGTTACCAAGCAAAAGTGAGGAAGTTTATGGGTGA  299
            |||||||||||||||| ||||||| |||||||||||||||||||||||||||  || |||
Sbjct  255  TTCCTCACCAAATCCACAGCCACATTGTTACCAAGCAAAAGTGAGGAAGTTTGCGGCTGA  314

Query  300  GATCGACGTTAGTGAGTTCAGGCTAAGGCCAACACAAGAATGAG-A-TTG--A--T----  349
            |||||||||||||||||| ||||||||||||||| ||||||||  | |||  |  |    
Sbjct  315  GATCGACGTTAGTGAGTTTAGGCTAAGGCCAACAAAAGAATGATCAATTGTGAGGTGATA  374

Query  350  --CACTTCCAACTCTGTGCGCTTGCAGTGAGAAGACTCTT  387
              ||||||||| ||||||||||| ||||||||||||||||
Sbjct  375  ATCACTTCCAATTCTGTGCGCTTCCAGTGAGAAGACTCTT  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18247192887


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5