BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493317
Length=487
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15700.1 | Symbols: | Thioredoxin superfamily protein | chr... 749 0.0
AT4G15660.1 | Symbols: | Thioredoxin superfamily protein | chr... 453 7e-127
AT4G15690.1 | Symbols: | Thioredoxin superfamily protein | chr... 425 1e-118
AT4G15680.1 | Symbols: | Thioredoxin superfamily protein | chr... 416 9e-116
AT4G15670.1 | Symbols: | Thioredoxin superfamily protein | chr... 394 4e-109
> AT4G15700.1 | Symbols: | Thioredoxin superfamily protein | chr4:8937393-8937892
FORWARD LENGTH=500
Length=500
Score = 749 bits (405), Expect = 0.0
Identities = 460/487 (94%), Gaps = 1/487 (0%)
Strand=Plus/Plus
Query 1 GTCACTTCTCATCTTCACCCAAAGATATCATTAATCTCTTTATAAGTTATCTAGTTTTCC 60
|||||||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||
Sbjct 1 GTCACTTCTCATTTTCACCCAAATATATCAATAATCTCTCTATAAGTTATCTAGTTTTCC 60
Query 61 CATTTTGATCTCTAATCTAGCATCTTGACCAAACACACCTATTTTTATCCTTTGCAATAC 120
||| || |||||||||||||||| |||||||||||||||||||||| |||||||||| ||
Sbjct 61 CATATTCATCTCTAATCTAGCATTTTGACCAAACACACCTATTTTTCTCCTTTGCAAGAC 120
Query 121 GGTTTTCAAATATCCTATCACGTTATAACACTAATGGAGAATCTACAAAAGATGATATCC 180
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 121 AGTTTTCAAATAT-CTATCACGTTATATTACTAATGGAGAATCTACAAAAGATGATCTCC 179
Query 181 GAGAAATCGGTAGTGATCTTTAGCAAGAACTCTTGTTGCATGTCTCACACAATCAAGACT 240
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 GAGAAGTCGGTAGTGATCTTTAGCAAGAACTCTTGCTGCATGTCTCACACAATCAAGACT 239
Query 241 CTCTTCTTAGACTTTGGCATGAACCCGACGATATATGAACTCGATGAGATTAACAGAGGA 300
|||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||
Sbjct 240 CTCTTCTTAGACCTTGGCGTGAACCCGACGATCTATGAACTCGATGAGATTAGCAGAGGA 299
Query 301 AAGGAGATAGAGCATGCATTGGCTCAGCTCGGGTGCAGCCCGACCGTGCCAGTGGTGTTC 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 AAGGAGATAGAGCATGCATTGGCTCAGCTCGGGTGCAGCCCGACAGTGCCAGTGGTGTTC 359
Query 361 ATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTGAATCGTTCT 420
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 360 ATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGCTCC 419
Query 421 CTTGTTCCAATGCTTAAGCGCGCTGGAGCATTATGGCTTTGACTTCAAAATAAATGGGAT 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 420 CTTGTTCCAATGCTTAAGCGCGCTGGAGCTTTATGGCTTTGACTTCAAAATAAATGGAAT 479
Query 481 TGCAAAT 487
|||||||
Sbjct 480 TGCAAAT 486
> AT4G15660.1 | Symbols: | Thioredoxin superfamily protein | chr4:8925806-8926310
FORWARD LENGTH=505
Length=505
Score = 453 bits (245), Expect = 7e-127
Identities = 359/415 (87%), Gaps = 3/415 (1%)
Strand=Plus/Plus
Query 50 TCTAGTTTTCCCAT-TTTGATCTCTAATCTAGCATCT-TGACCAAACACACCTATTTTTA 107
|||| |||||| || ||| || ||| || | |||| | | | | |||| ||| | | ||
Sbjct 18 TCTAATTTTCCAATCTTTCATTTCTGATTTTGCAT-TGTAATCGAACATACCCACTAATA 76
Query 108 TCCTTTGCAATACGGTTTTCAAATATCCTATCACGTTATAACACTAATGGAGAATCTACA 167
|||||||||| || |||||||| | ||||| || ||||||||| ||||||||| ||||
Sbjct 77 TCCTTTGCAAGCCGCTTTTCAAACAACCTATTACATTATAACACCAATGGAGAAGATACA 136
Query 168 AAAGATGATATCCGAGAAATCGGTAGTGATCTTTAGCAAGAACTCTTGTTGCATGTCTCA 227
||||||||| |||||||| |||||||| || |||||||| ||||||||||||||||| ||
Sbjct 137 AAAGATGATCTCCGAGAAGTCGGTAGTAATATTTAGCAATAACTCTTGTTGCATGTCACA 196
Query 228 CACAATCAAGACTCTCTTCTTAGACTTTGGCATGAACCCGACGATATATGAACTCGATGA 287
||||||||||||||||||||||||| ||||| |||||||||| || ||||| || || ||
Sbjct 197 CACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACAATCTATGAGCTAGACGA 256
Query 288 GATTAACAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTCGGGTGCAGCCCGACCGT 347
||| ||||||||||| ||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct 257 GATCAACAGAGGAAAAGAGATAGAGTATGCATTGGCTCAGCTTGGCTGCAGCCCGACTGT 316
Query 348 GCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCA 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCA 376
Query 408 TCTGAATCGTTCTCTTGTTCCAATGCTTAAGCGCGCTGGAGCATTATGGCTTTGA 462
||| || |||||||| ||||||||||||| ||| ||| || ||||||||||||
Sbjct 377 TCTCAACCGTTCTCTCATTCCAATGCTTAAACGCTTTGGGGCTTTATGGCTTTGA 431
> AT4G15690.1 | Symbols: | Thioredoxin superfamily protein | chr4:8934324-8934921
FORWARD LENGTH=598
Length=598
Score = 425 bits (230), Expect = 1e-118
Identities = 300/335 (90%), Gaps = 0/335 (0%)
Strand=Plus/Plus
Query 153 AATGGAGAATCTACAAAAGATGATATCCGAGAAATCGGTAGTGATCTTTAGCAAGAACTC 212
||||||||| ||||| |||||||| || ||||| |||||||| || ||||||||||||||
Sbjct 120 AATGGAGAACCTACAGAAGATGATCTCTGAGAAGTCGGTAGTAATTTTTAGCAAGAACTC 179
Query 213 TTGTTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACTTTGGCATGAACCCGACGAT 272
|| ||||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 180 ATGCTGCATGTCTCATACAATTAAGACTCTCTTCTTAGACTTTGGCGTGAACCCGACTAT 239
Query 273 ATATGAACTCGATGAGATTAACAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTCGG 332
||||| ||||| ||||| |||| ||||| |||||||||||| |||||||||||||||||
Sbjct 240 CTATGAGCTCGACGAGATCAACATAGGAAGGGAGATAGAGCAAGCATTGGCTCAGCTCGG 299
Query 333 GTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 392
|||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 ATGCAGCCCGACCGTTCCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGTGGAGCCAATCA 359
Query 393 AGTCATGAGTCTCCATCTGAATCGTTCTCTTGTTCCAATGCTTAAGCGCGCTGGAGCATT 452
|||||||||||||||||| || || || |||||||| |||||||| || |||||||||||
Sbjct 360 AGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCTATGCTTAAACGTGCTGGAGCATT 419
Query 453 ATGGCTTTGACTTCAAAATAAATGGGATTGCAAAT 487
|||||||| ||||||||||||||| ||| |||||
Sbjct 420 ATGGCTTTAACTTCAAAATAAATGTAATTTCAAAT 454
> AT4G15680.1 | Symbols: | Thioredoxin superfamily protein | chr4:8931652-8932295
FORWARD LENGTH=644
Length=644
Score = 416 bits (225), Expect = 9e-116
Identities = 304/343 (89%), Gaps = 1/343 (0%)
Strand=Plus/Plus
Query 138 TCACGTTATAACACTAATGGAGAATCTACAAAAGATGATATCCGAGAAATCGGTAGTGAT 197
|||| |||||| || |||||| || ||||| |||||||| |||||||| |||||||||||
Sbjct 146 TCACATTATAATACCAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGAT 205
Query 198 CTTTAGCAAGAACTCTTGTTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACTTTGG 257
||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 206 CTTTAGCAAAAACTCATGTTGCATGTCTCACACTATCAAGACTCTCTTCATAGACTTTGG 265
Query 258 CATGAACCCGACGATATATGAACTCGATGAGATTAACAGAGGAAAGGAGATAGAGCATGC 317
| |||| || ||||| ||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct 266 CGTGAATCCAACGATCTATGAGCTAGATGAGATCAACAGAGGAAAGGAGATAGAGCAAGC 325
Query 318 ATTGGCTCAGCTCGGGTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGT 377
|||||||||||| || |||||||| |||||||| |||||||| || ||||||||||||||
Sbjct 326 ATTGGCTCAGCTTGGCTGCAGCCCAACCGTGCCTGTGGTGTTTATTGGAGGGCAGCTTGT 385
Query 378 TGGTGGAGCCAATCAAGTCATGAGTCTCCATCTGAATCGTTCTCTTGTTCCAATGCTTAA 437
||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||
Sbjct 386 TGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTGGTTCCTATGCTAAA 445
Query 438 GCGCGCTGGAGCATTATGGCTTTGACTTCAAAATAAATGGGAT 480
| | | ||||||| ||||||||||| ||||| |||| |||||
Sbjct 446 GAGGGTTGGAGCACTATGGCTTTGATTTCAAGATAAG-GGGAT 487
> AT4G15670.1 | Symbols: | Thioredoxin superfamily protein | chr4:8929179-8929765
FORWARD LENGTH=587
Length=587
Score = 394 bits (213), Expect = 4e-109
Identities = 283/318 (89%), Gaps = 0/318 (0%)
Strand=Plus/Plus
Query 146 TAACACTAATGGAGAATCTACAAAAGATGATATCCGAGAAATCGGTAGTGATCTTTAGCA 205
||||| ||||||||| ||||| ||||||| || ||||| ||| ||||||| |||||||
Sbjct 51 TAACAAAAATGGAGAAGCTACAGAAGATGACCTCGGAGAAGTCGTTAGTGATATTTAGCA 110
Query 206 AGAACTCTTGTTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACTTTGGCATGAACC 265
| ||||| || |||||||| ||||||||||||||||||||||||||| ||||| | || |
Sbjct 111 AAAACTCATGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTAAATC 170
Query 266 CGACGATATATGAACTCGATGAGATTAACAGAGGAAAGGAGATAGAGCATGCATTGGCTC 325
||||||| ||||| || |||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 171 CGACGATTTATGAGCTAGATGAGATCAACAGAGGAAAAGAGATAGAGCAAGCATTGGCTC 230
Query 326 AGCTCGGGTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAG 385
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 231 AGCTTGGCTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTCGGTGGAG 290
Query 386 CCAATCAAGTCATGAGTCTCCATCTGAATCGTTCTCTTGTTCCAATGCTTAAGCGCGCTG 445
||||||||||||||||||||||||| || |||||||| ||||||||||||| |||| ||
Sbjct 291 CCAATCAAGTCATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGCTTAAACGCGTTG 350
Query 446 GAGCATTATGGCTTTGAC 463
| || |||||||||||||
Sbjct 351 GGGCGTTATGGCTTTGAC 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23208175914
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5