BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493318
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15680.1 | Symbols: | Thioredoxin superfamily protein | chr... 743 0.0
AT4G15660.1 | Symbols: | Thioredoxin superfamily protein | chr... 462 1e-129
AT4G15700.1 | Symbols: | Thioredoxin superfamily protein | chr... 449 1e-125
AT4G15670.1 | Symbols: | Thioredoxin superfamily protein | chr... 442 2e-123
AT4G15690.1 | Symbols: | Thioredoxin superfamily protein | chr... 401 3e-111
> AT4G15680.1 | Symbols: | Thioredoxin superfamily protein | chr4:8931652-8932295
FORWARD LENGTH=644
Length=644
Score = 743 bits (402), Expect = 0.0
Identities = 470/502 (94%), Gaps = 7/502 (1%)
Strand=Plus/Plus
Query 94 TTTCACATTATAACACAAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTG 153
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 TTTCACATTATAATACCAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTG 203
Query 154 ATCTTTAGCAAAAACTCATGTTGCATGTCTCACACAATCAAGACTCTCTTCATAGACTTT 213
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 204 ATCTTTAGCAAAAACTCATGTTGCATGTCTCACACTATCAAGACTCTCTTCATAGACTTT 263
Query 214 GGTGTGAACCCAACCATCTATGAGCTAGATGAGATAAACAGAGGAAAGGAGATAGAGCAA 273
|| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 264 GGCGTGAATCCAACGATCTATGAGCTAGATGAGATCAACAGAGGAAAGGAGATAGAGCAA 323
Query 274 GCATTGGCTCAGCTTGGCTGCAGCCCAACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTT 333
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 324 GCATTGGCTCAGCTTGGCTGCAGCCCAACCGTGCCTGTGGTGTTTATTGGAGGGCAGCTT 383
Query 334 GTTGGTGGAGCCAATCAAGTCATGAGCCTCCATCTCAATCGCTCTCTCGTTCCAATGCTT 393
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 384 GTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTGGTTCCTATGCTA 443
Query 394 AAGCGCGTTGGAGCACTATGGCTTTGATTTCAAAATAAAGGAATGCTTACGTAAAGAACG 453
||| | ||||||||||||||||||||||||||| |||| || || |||||| | |||||
Sbjct 444 AAGAGGGTTGGAGCACTATGGCTTTGATTTCAAGATAAGGGGATATTTACGTTATGAACG 503
Query 454 TAGCATGATAATAATAATGTAATGGAAGTAATCAAAGATGACAAACAAAAACACATATAC 513
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 504 TAGCATGGTAATAATAATGTAATGAAAGTAATCAAAGATGACAAACAAAAACACATATAC 563
Query 514 ATGTATGTTGTCTATCTAAGTTTTG-AATGGATAGACTATGA-----GGATACCTATTTT 567
||||||||||||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 564 ATGTATGTTGTCTATCTAAGTTTTGGAA-GGATAGACTATGACTATAGGATACCTATTTT 622
Query 568 GTAACGTGTGGGTAAACTTTAT 589
||||||||||||||||||||||
Sbjct 623 GTAACGTGTGGGTAAACTTTAT 644
Score = 148 bits (80), Expect = 4e-35
Identities = 89/93 (96%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 1 ATCAAAAACAAACTCAAAGTCATCTCTTATATATCTTCAGCCAAAAGACTTCAAGTTCTC 60
||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1 ATCAAAAACAAACTCTAAGTCATCTCTTATATATCGTCAGCC-AAAGACTTCAAGTTCTC 59
Query 61 TAGCTTACCAATTTCACCCCTCTTCTCTCATTT 93
||||||||||||||||||||| |||||||||||
Sbjct 60 TAGCTTACCAATTTCACCCCTTTTCTCTCATTT 92
> AT4G15660.1 | Symbols: | Thioredoxin superfamily protein | chr4:8925806-8926310
FORWARD LENGTH=505
Length=505
Score = 462 bits (250), Expect = 1e-129
Identities = 351/400 (88%), Gaps = 5/400 (1%)
Strand=Plus/Plus
Query 98 ACATTATAACACAAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGATCT 157
|||||||||||| |||||| ||| |||| |||||||||||||||||||||||||| || |
Sbjct 109 ACATTATAACACCAATGGAGAAGATACAAAAGATGATCTCCGAGAAGTCGGTAGTAATAT 168
Query 158 TTAGCAAAAACTCATGTTGCATGTCTCACACAATCAAGACTCTCTTCATAGACTTTGGTG 217
||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||| |||| |
Sbjct 169 TTAGCAATAACTCTTGTTGCATGTCACACACAATCAAGACTCTCTTCTTAGACCTTGGCG 228
Query 218 TGAACCCAACCATCTATGAGCTAGATGAGATAAACAGAGGAAAGGAGATAGAGCAAGCAT 277
||||||| || |||||||||||||| ||||| ||||||||||| ||||||||| | ||||
Sbjct 229 TGAACCCGACAATCTATGAGCTAGACGAGATCAACAGAGGAAAAGAGATAGAGTATGCAT 288
Query 278 TGGCTCAGCTTGGCTGCAGCCCAACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTG 337
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 289 TGGCTCAGCTTGGCTGCAGCCCGACTGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTG 348
Query 338 GTGGAGCCAATCAAGTCATGAGCCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAAGC 397
|||||||||||||||||||||| ||||||||||| || |||||| ||||||||||||| |
Sbjct 349 GTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGCTTAAAC 408
Query 398 GCGTTGGAGCACTATGGCTTTGATTTCAAA-ATAAAGGAAT-GCTTACGTAAAGAACGTA 455
|| |||| || |||||||||||| ||| ||||| |||| | |||| || || ||||
Sbjct 409 GCTTTGGGGCTTTATGGCTTTGATA--AAATATAAAAGAATAG-TTACTTATTGATCGTA 465
Query 456 GCATGATAATAATAATGTAATGGAAGTAATCAAAGATGAC 495
|| || ||||||| |||| ||| || |||||| ||||||
Sbjct 466 GCTTGGTAATAATGATGTCATGAAACCAATCAAGGATGAC 505
> AT4G15700.1 | Symbols: | Thioredoxin superfamily protein | chr4:8937393-8937892
FORWARD LENGTH=500
Length=500
Score = 449 bits (243), Expect = 1e-125
Identities = 310/343 (90%), Gaps = 1/343 (0%)
Strand=Plus/Plus
Query 96 TCACATTATAACACAAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGAT 155
|||| ||||| || |||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 137 TCACGTTATATTACTAATGGAGAATCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGAT 196
Query 156 CTTTAGCAAAAACTCATGTTGCATGTCTCACACAATCAAGACTCTCTTCATAGACTTTGG 215
||||||||| ||||| || |||||||||||||||||||||||||||||| ||||| ||||
Sbjct 197 CTTTAGCAAGAACTCTTGCTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACCTTGG 256
Query 216 TGTGAACCCAACCATCTATGAGCTAGATGAGATAAACAGAGGAAAGGAGATAGAGCAAGC 275
|||||||| || |||||||| || |||||||| | ||||||||||||||||||||| ||
Sbjct 257 CGTGAACCCGACGATCTATGAACTCGATGAGATTAGCAGAGGAAAGGAGATAGAGCATGC 316
Query 276 ATTGGCTCAGCTTGGCTGCAGCCCAACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGT 335
|||||||||||| || |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 317 ATTGGCTCAGCTCGGGTGCAGCCCGACAGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGT 376
Query 336 TGGTGGAGCCAATCAAGTCATGAGCCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAA 395
|||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct 377 TGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCAATGCTTAA 436
Query 396 GCGCGTTGGAGCACTATGGCTTTGATTTCAAAATAAA-GGAAT 437
||||| |||||| ||||||||||| ||||||||||| |||||
Sbjct 437 GCGCGCTGGAGCTTTATGGCTTTGACTTCAAAATAAATGGAAT 479
> AT4G15670.1 | Symbols: | Thioredoxin superfamily protein | chr4:8929179-8929765
FORWARD LENGTH=587
Length=587
Score = 442 bits (239), Expect = 2e-123
Identities = 340/388 (88%), Gaps = 9/388 (2%)
Strand=Plus/Plus
Query 104 TAACACAAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCA 163
||||| ||||||| |||||||||||||||| ||| ||||||||| ||||||| |||||||
Sbjct 51 TAACAAAAATGGAGAAGCTACAGAAGATGACCTCGGAGAAGTCGTTAGTGATATTTAGCA 110
Query 164 AAAACTCATGTTGCATGTCTCACACAATCAAGACTCTCTTCATAGACTTTGGTGTGAACC 223
|||||||||| |||||||| ||||||||||||||||||||| ||||| |||| || || |
Sbjct 111 AAAACTCATGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTAAATC 170
Query 224 CAACCATCTATGAGCTAGATGAGATAAACAGAGGAAAGGAGATAGAGCAAGCATTGGCTC 283
| || || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 171 CGACGATTTATGAGCTAGATGAGATCAACAGAGGAAAAGAGATAGAGCAAGCATTGGCTC 230
Query 284 AGCTTGGCTGCAGCCCAACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAG 343
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 231 AGCTTGGCTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTCGGTGGAG 290
Query 344 CCAATCAAGTCATGAGCCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAAGCGCGTTG 403
|||||||||||||||| ||||||||||| || |||||| ||||||||||||| |||||||
Sbjct 291 CCAATCAAGTCATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGCTTAAACGCGTTG 350
Query 404 GAGCACTATGGCTTTGATTTCAAAATA-AAGGAA-T-GCTTACGTAAAGAACGTAGCAT- 459
| || ||||||||||| ||||||| || ||| | | |||| || || |||| ||
Sbjct 351 GGGCGTTATGGCTTTGA---CAAAATATAAAGAAATAG-TTACTTATTGATTGTAG-ATT 405
Query 460 GATAATAATAATGTAATGGAAGTAATCA 487
| ||||||||||||| || || |||||
Sbjct 406 GGTAATAATAATGTATTGAAACCAATCA 433
> AT4G15690.1 | Symbols: | Thioredoxin superfamily protein | chr4:8934324-8934921
FORWARD LENGTH=598
Length=598
Score = 401 bits (217), Expect = 3e-111
Identities = 287/322 (89%), Gaps = 0/322 (0%)
Strand=Plus/Plus
Query 111 AATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAAAACTC 170
|||||| || ||||||||||||||||| |||||||||||||| || |||||||| |||||
Sbjct 120 AATGGAGAACCTACAGAAGATGATCTCTGAGAAGTCGGTAGTAATTTTTAGCAAGAACTC 179
Query 171 ATGTTGCATGTCTCACACAATCAAGACTCTCTTCATAGACTTTGGTGTGAACCCAACCAT 230
||| ||||||||||| ||||| |||||||||||| |||||||||| |||||||| || ||
Sbjct 180 ATGCTGCATGTCTCATACAATTAAGACTCTCTTCTTAGACTTTGGCGTGAACCCGACTAT 239
Query 231 CTATGAGCTAGATGAGATAAACAGAGGAAAGGAGATAGAGCAAGCATTGGCTCAGCTTGG 290
||||||||| || ||||| |||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 240 CTATGAGCTCGACGAGATCAACATAGGAAGGGAGATAGAGCAAGCATTGGCTCAGCTCGG 299
Query 291 CTGCAGCCCAACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 350
|||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 ATGCAGCCCGACCGTTCCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGTGGAGCCAATCA 359
Query 351 AGTCATGAGCCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAAGCGCGTTGGAGCACT 410
||||||||| ||||||||||| ||||| || ||||| |||||||| || | ||||||| |
Sbjct 360 AGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCTATGCTTAAACGTGCTGGAGCATT 419
Query 411 ATGGCTTTGATTTCAAAATAAA 432
|||||||| | |||||||||||
Sbjct 420 ATGGCTTTAACTTCAAAATAAA 441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5