BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493319
Length=580
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15670.1 | Symbols: | Thioredoxin superfamily protein | chr... 830 0.0
AT4G15660.1 | Symbols: | Thioredoxin superfamily protein | chr... 564 4e-160
AT4G15680.1 | Symbols: | Thioredoxin superfamily protein | chr... 496 1e-139
AT4G15700.1 | Symbols: | Thioredoxin superfamily protein | chr... 433 1e-120
AT4G15690.1 | Symbols: | Thioredoxin superfamily protein | chr... 392 2e-108
> AT4G15670.1 | Symbols: | Thioredoxin superfamily protein | chr4:8929179-8929765
FORWARD LENGTH=587
Length=587
Score = 830 bits (449), Expect = 0.0
Identities = 542/586 (92%), Gaps = 10/586 (2%)
Strand=Plus/Plus
Query 1 AACCTATTTCATCCTCCTCGAGTCGCTTTTCAAACACACTTTCAAATTATAACAACAATG 60
||||||||||||||||||| |||| ||||||||||||||||||||| | |||||| ||||
Sbjct 4 AACCTATTTCATCCTCCTCAAGTCACTTTTCAAACACACTTTCAAA-T-TAACAAAAATG 61
Query 61 GAGAAGCTACAGAAGATGATCTCGGAGAAGTCGGTAGTTATCTTTAGCAAAAACTCTTGC 120
||||||||||||||||||| ||||||||||||| |||| || |||||||||||||| |||
Sbjct 62 GAGAAGCTACAGAAGATGACCTCGGAGAAGTCGTTAGTGATATTTAGCAAAAACTCATGC 121
Query 121 TGCATGTCGCACACAATCAAGACTCTCTTCTTAGACATTGGCGTGAATCCGACGATCTAT 180
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 122 TGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTAAATCCGACGATTTAT 181
Query 181 GAACTAGACGAGATCAACAGGGGAAAAGAGATAGAGCAAGCATTGGCTCAACTTGGCTGT 240
|| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 182 GAGCTAGATGAGATCAACAGAGGAAAAGAGATAGAGCAAGCATTGGCTCAGCTTGGCTGC 241
Query 241 AGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTC 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 242 AGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTCGGTGGAGCCAATCAAGTC 301
Query 301 ATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAACGCGCTGGGGCTTTATGG 360
||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 302 ATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGCTTAAACGCGTTGGGGCGTTATGG 361
Query 361 CTTTGACTAAATATAAAGGAATACTTACTTATTGACTGTAGCTTGGTAATAATAATGTCA 420
||||||| |||||||||| |||| ||||||||||| ||||| |||||||||||||||| |
Sbjct 362 CTTTGACAAAATATAAAGAAATAGTTACTTATTGATTGTAGATTGGTAATAATAATGT-A 420
Query 421 -TGAAACTAATCAAATACGTATGAATGTTTTGTGTCTATCTAAGTTTTGAAAGGATAGAT 479
|||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGAAACCAATCATATACATATGAATGTTTTGTGTCTATCTAAGTTTTGAAAGGATAGAT 480
Query 480 TATGTGG--G--TACCG-TTTCCGTAACGTGCTTGGTATACTTAGTGGTGTATTTCTATT 534
|||| || | ||| | |||| ||||||| |||||||||||||||| ||||||||||||
Sbjct 481 TATGAGGCAGGGTACTGATTTC-GTAACGTTCTTGGTATACTTAGTGTTGTATTTCTATT 539
Query 535 TTCAGTTTTTATAAATACATACATGCATTTAAGAAAAGTGTATGCC 580
|||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 540 TTCAGTTTTTATGAATACAAACATGCATTTAAGAAAAGTGTATGCC 585
> AT4G15660.1 | Symbols: | Thioredoxin superfamily protein | chr4:8925806-8926310
FORWARD LENGTH=505
Length=505
Score = 564 bits (305), Expect = 4e-160
Identities = 379/414 (92%), Gaps = 8/414 (2%)
Strand=Plus/Plus
Query 24 CGCTTTTCAAAC-ACACT-TTCAAATTATAACAACAATGGAGAAGCTACAGAAGATGATC 81
|||||||||||| || || || | ||||||||| ||||||||||| |||| |||||||||
Sbjct 89 CGCTTTTCAAACAAC-CTATT-ACATTATAACACCAATGGAGAAGATACAAAAGATGATC 146
Query 82 TCGGAGAAGTCGGTAGTTATCTTTAGCAAAAACTCTTGCTGCATGTCGCACACAATCAAG 141
|| |||||||||||||| || |||||||| |||||||| |||||||| ||||||||||||
Sbjct 147 TCCGAGAAGTCGGTAGTAATATTTAGCAATAACTCTTGTTGCATGTCACACACAATCAAG 206
Query 142 ACTCTCTTCTTAGACATTGGCGTGAATCCGACGATCTATGAACTAGACGAGATCAACAGG 201
||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 207 ACTCTCTTCTTAGACCTTGGCGTGAACCCGACAATCTATGAGCTAGACGAGATCAACAGA 266
Query 202 GGAAAAGAGATAGAGCAAGCATTGGCTCAACTTGGCTGTAGCCCGACCGTGCCAGTGGTG 261
||||||||||||||| | ||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 267 GGAAAAGAGATAGAGTATGCATTGGCTCAGCTTGGCTGCAGCCCGACTGTGCCAGTGGTG 326
Query 262 TTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGT 321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 327 TTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGT 386
Query 322 TCTCTCATTCCAATGCTTAAACGCGCTGGGGCTTTATGGCTTTGACTAAA-TATAAAGGA 380
|||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| ||
Sbjct 387 TCTCTCATTCCAATGCTTAAACGCTTTGGGGCTTTATGGCTTTGA-TAAAATATAAAAGA 445
Query 381 ATACTTACTTATTGA-CTGTAGCTTGGTAATAATAATGTCATGAAACTAATCAA 433
||| ||||||||||| | |||||||||||||||| |||||||||||| ||||||
Sbjct 446 ATAGTTACTTATTGATC-GTAGCTTGGTAATAATGATGTCATGAAACCAATCAA 498
> AT4G15680.1 | Symbols: | Thioredoxin superfamily protein | chr4:8931652-8932295
FORWARD LENGTH=644
Length=644
Score = 496 bits (268), Expect = 1e-139
Identities = 382/437 (87%), Gaps = 8/437 (2%)
Strand=Plus/Plus
Query 2 ACCTATTTCATCCTCCTCGAGTCGCTTTTCAAACACACTTTCAAATTATAACAACAATGG 61
||| ||||||||||| ||||||||| ||| |||||| ||||| ||||||| | ||||||
Sbjct 107 ACCCATTTCATCCTCGGCGAGTCGCTCTTCGAACACA-TTTCACATTATAATACCAATGG 165
Query 62 AGAAGCTACAGAAGATGATCTCGGAGAAGTCGGTAGTTATCTTTAGCAAAAACTCTTGCT 121
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |
Sbjct 166 ATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAAAACTCATGTT 225
Query 122 GCATGTCGCACACAATCAAGACTCTCTTCTTAGACATTGGCGTGAATCCGACGATCTATG 181
||||||| ||||| ||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 226 GCATGTCTCACACTATCAAGACTCTCTTCATAGACTTTGGCGTGAATCCAACGATCTATG 285
Query 182 AACTAGACGAGATCAACAGGGGAAAAGAGATAGAGCAAGCATTGGCTCAACTTGGCTGTA 241
| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||| |
Sbjct 286 AGCTAGATGAGATCAACAGAGGAAAGGAGATAGAGCAAGCATTGGCTCAGCTTGGCTGCA 345
Query 242 GCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCA 301
|||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 346 GCCCAACCGTGCCTGTGGTGTTTATTGGAGGGCAGCTTGTTGGTGGAGCCAATCAAGTCA 405
Query 302 TGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAA-ACGCGCTGGGGCTTTATGG 360
||||||||||||||||||| ||||| |||| ||||| || | | | ||| || |||||
Sbjct 406 TGAGTCTCCATCTCAATCGCTCTCTGGTTCCTATGCTAAAGAGG-GTTGGAGCACTATGG 464
Query 361 CTTTGACTA-AATATAAAGGAATACTTAC-TTATTGA-CTGTAGCTTGGTAATAATAATG 417
|||||| | || |||| || ||| |||| |||| || | ||||| ||||||||||||||
Sbjct 465 CTTTGATTTCAAGATAAGGGGATATTTACGTTAT-GAAC-GTAGCATGGTAATAATAATG 522
Query 418 TCATGAAACTAATCAAA 434
| |||||| ||||||||
Sbjct 523 TAATGAAAGTAATCAAA 539
> AT4G15700.1 | Symbols: | Thioredoxin superfamily protein | chr4:8937393-8937892
FORWARD LENGTH=500
Length=500
Score = 433 bits (234), Expect = 1e-120
Identities = 298/329 (91%), Gaps = 4/329 (1%)
Strand=Plus/Plus
Query 57 AATGGAGAAGCTACAGAAGATGATCTCGGAGAAGTCGGTAGTTATCTTTAGCAAAAACTC 116
||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 152 AATGGAGAATCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAGAACTC 211
Query 117 TTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACATTGGCGTGAATCCGACGAT 176
|||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 212 TTGCTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACGAT 271
Query 177 CTATGAACTAGACGAGATCAACAGGGGAAAAGAGATAGAGCAAGCATTGGCTCAACTTGG 236
||||||||| || ||||| | ||| ||||| ||||||||||| ||||||||||| || ||
Sbjct 272 CTATGAACTCGATGAGATTAGCAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTCGG 331
Query 237 CTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 296
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 GTGCAGCCCGACAGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 391
Query 297 AGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAACGCGCTGGGGCTTT 356
||||||||||||||||||||| || || || ||||||||||||| |||||||| |||||
Sbjct 392 AGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCAATGCTTAAGCGCGCTGGAGCTTT 451
Query 357 ATGGCTTTGACT--AAATATAAA-GGAAT 382
|||||||||||| ||| ||||| |||||
Sbjct 452 ATGGCTTTGACTTCAAA-ATAAATGGAAT 479
> AT4G15690.1 | Symbols: | Thioredoxin superfamily protein | chr4:8934324-8934921
FORWARD LENGTH=598
Length=598
Score = 392 bits (212), Expect = 2e-108
Identities = 296/337 (88%), Gaps = 4/337 (1%)
Strand=Plus/Plus
Query 44 AAA-TTATAACAACAATGGAGAAGCTACAGAAGATGATCTCGGAGAAGTCGGTAGTTATC 102
||| ||| || |||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 106 AAATTTACAAAAACAATGGAGAACCTACAGAAGATGATCTCTGAGAAGTCGGTAGTAATT 165
Query 103 TTTAGCAAAAACTCTTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACATTGGC 162
|||||||| ||||| ||||||||||| || ||||| |||||||||||||||||| |||||
Sbjct 166 TTTAGCAAGAACTCATGCTGCATGTCTCATACAATTAAGACTCTCTTCTTAGACTTTGGC 225
Query 163 GTGAATCCGACGATCTATGAACTAGACGAGATCAACAGGGGAAAAGAGATAGAGCAAGCA 222
||||| ||||| |||||||| || ||||||||||||| |||| |||||||||||||||
Sbjct 226 GTGAACCCGACTATCTATGAGCTCGACGAGATCAACATAGGAAGGGAGATAGAGCAAGCA 285
Query 223 TTGGCTCAACTTGGCTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTT 282
|||||||| || || || ||||||||||| || ||||||||||| |||||||||||||||
Sbjct 286 TTGGCTCAGCTCGGATGCAGCCCGACCGTTCCGGTGGTGTTCATTGGAGGGCAGCTTGTT 345
Query 283 GGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAA 342
||||||||||||||||||||||||||||||||||| || || || |||| |||||||||
Sbjct 346 GGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCTATGCTTAAA 405
Query 343 CGCGCTGGGGCTTTATGGCTTTGACT--AAATATAAA 377
|| ||||| || |||||||||| ||| ||| |||||
Sbjct 406 CGTGCTGGAGCATTATGGCTTTAACTTCAAA-ATAAA 441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27879951585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5