BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493321
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15640.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1982 0.0
> AT4G15640.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G21465.1);
Has 38 Blast hits to 38 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8918985-8921930
REVERSE LENGTH=1511
Length=1511
Score = 1982 bits (1073), Expect = 0.0
Identities = 1264/1353 (93%), Gaps = 26/1353 (2%)
Strand=Plus/Plus
Query 1 AACCAGTGA-AATCACGAGTCATGCAATTTCTCCAGAACTCTCGTAGAATCGCTAAGGTC 59
||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 59 AACCAGT-AGAATCACGAGTCATGCAATTCCTCCAGAACTCTCGTAGAATCGCTACGGTC 117
Query 60 TTAAAACCCATTGTTACCACCGAGACTAATCTGAGATTCTTCTCCTCTGCTTCTCAAATC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TTAAAACCCATTGTTACCACCGAGACTAATCTGAGATTCTTCTCCTCTGCTTCTCAAATC 177
Query 120 TCAAGTTCCTTTCAATGGCGGAATCAAGCGTCTGCGTCTTCCTCTGTATTAAAAGGGATT 179
||||| ||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct 178 TCAAGATCCTTCCAATGGCGGAGTCAAGCATCTTCGTCTTCCTCTGTATTAAAAGGGATT 237
Query 180 GATAGAT-GTAGTCACTCGTCTTCTATGAGCTTGCTGATCCCCAGATCGAGCTTTTCTTC 238
||||| | ||||||||| ||| |||||||||||| |||||||||||||||||||| | ||
Sbjct 238 GATAG-TAGTAGTCACTTGTCCTCTATGAGCTTGTTGATCCCCAGATCGAGCTTTACGTC 296
Query 239 TGAAGCGGAAAAGCTCGCGGGAAATCCTACAGTGACTGTCAAGGATTTGCATGATAAAAT 298
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 TGAAGCGGAAAAGCTTGCGGGAAATCCTACAGTGACTGTGAAGGATTTGCATGATAAAAT 356
Query 299 GCTTAATTCTGTAAATGTCAAGAGATCAATGCCTCCAAATGCGTGGTTGTGGTC-GTTGA 357
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 357 GCTTAATTCTGTAAATGTCAAGAGATCAATGCCTCCAAATGCGTGGTTGTGG-CTGTTGA 415
Query 358 TTGAGAACTGTCAGAATCAGGATGACATTCATCTTCTCTTCGACGTGCTTCAGAATCTAC 417
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 416 TTGAGAACTGTCAGAATCAGGATGATATTCATCTTCTCTTTGACGTTCTTCAGAATCTAC 475
Query 418 GGAGATTTAGATTATCTAATCTTCGTATTCATGACAACTTCAATTGCAATTTATGCCAAC 477
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 476 GGAGATTTAGATTATCTAATCTTCGTATTCATGACAACTTCAATTGCAATCTATGCCAAC 535
Query 478 AAGTTGCTAAGACTTGTGTACGTGTTGGGGCAATTGACTCTGGAAAGAAGGCTTTGTGGA 537
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 536 AAGTTGCTAAGACTTGTGTACGTGTTGGGGCTATTGACTCTGGAAAGAAGGCTTTGTGGA 595
Query 538 AACATAATGTTCATGGTTTGACACCCAGTGTTTCATCTGCACACCATC-TATTGTCGCAT 596
||||||||||||| |||||||| ||||||||| ||||||||||||||| || |||| ||
Sbjct 596 AACATAATGTTCACGGTTTGACTCCCAGTGTTGCATCTGCACACCATCTTA-TGTCATAT 654
Query 597 GCACTAGAGCACAAGAATTCTGAACTCATGGAAGAAGTAATGCAACTCCTGAAAACAAAT 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 655 GCACTAGAGCACAAGAATTCTGAACTCATGGAAGAAGTAATGCAACTCCTGAAAACGAAT 714
Query 657 GATTTGCCTCTACAACCGGGTACAGCAGATTTAGTTTTCAGGATCTGTCGTGATACAGAT 716
||| ||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||
Sbjct 715 GATCTGCCTCTACAACCCGGTACAGCAGATTTAGTTTTTAGGATCTGTCATGATACAGAT 774
Query 717 AAGTGGGATCTACTAGCCAAGTACTCGAAAAAATTCTCCAAAGCTGGAGTTAAGTTGAGG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AAGTGGGATCTACTAGCCAAGTACTCGAAAAAATTCTCCAAAGCTGGAGTTAAGTTGAGG 834
Query 777 AAGACCACATTCGATGTGTGGATGGAATTTGCTGCCAAGAGAGGGGATACCGAGTCGCTA 836
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 835 AAGACCACATTCGATGTGTGGATGGAATTTGCTGCCAAGAGAGGTGATACAGAGTCGCTA 894
Query 837 TGGAAAGTAGATAAACAGAGATCAGAGACATACAGTCAACACACACTTTCTACTGCCTTT 896
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 895 TGGAAAGTAGATAAACAGAGATCAGAGACATACAGTCAACACACTCTTTCTACTGCCTTT 954
Query 897 TCTTGTGCAAAGGGTTTCCTACTAGAAAGTAAACCTGAAGAAGCTGCTGCCGTCATCCAG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TCTTGTGCAAAGGGTTTCCTACTAGAAAGTAAACCTGAAGAAGCTGCTGCCGTCATCCAG 1014
Query 957 ATTATCTGCCAAGCATATCCTGATGAGAAAAAGTCAGCGGTTTCGACTGAATTCGAGAAA 1016
||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 1015 ATTATCTGCCAAGCATATCCTGATGAGAAAAAGTCTGCAATTTCGACTGAATTTGAGAAA 1074
Query 1017 CTTGTAAATGAGTGGCCTGTGGACGTTATCAAGCACCAAACCGGA-GAAGATAAGAAGGC 1075
|||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1075 CTTGTAAACGAGTGGCCTGTGGACGTTATCAAGCACCAAACCG-ACGAAGATAAGAAGGC 1133
Query 1076 T-TTAGCTGCTTCATTGAAATCTGTGATTCCTTCCATGGTTAATGCATTGCTAAGATCGG 1134
| || ||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 1134 TCTT-GCTGCTTCATTGAAATCTGTGATTCCTTCAATGGTTAATACATTGCTAAGCTCGG 1192
Query 1135 GTTTGAACGTGAACGTGGATTTAGATGAGTTAAACAAGAACGAAGCTCTTCTCAGCTGAA 1194
|||| || |||| ||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1193 GTTTAAAAGTGAGCGTGGATCTGGATGAGTTAAACAAGAACGAAGCTCTTCTCAGCTGAA 1252
Query 1195 TGATTCATAGTAAAGGTG-GCAACAA-CG-TAGAGAAGAGGGA-ACGAACACATTC---- 1246
|| || | | | ||| | ||| || | | | | | | | ||||||||||
Sbjct 1253 TGGTTGA-A-TCAAGATTTGCAG-AATCTCTTG-GCGGCTCCACATGAACACATTCTTGT 1308
Query 1247 --AGTTTCTTGCATCCTACGATAACTCATTTTCTCGTTTTGACCTATATGAACAAAACGA 1304
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1309 CCAGTTTCTTGCATCCTACGGTAACTCATTTTCTCATTTTGACCTATATGAACAAAACGC 1368
Query 1305 CAAGAGTTGTCCTGTTTTGTAAGCCTCAAATAA 1337
|||||||||||||||||||||||||||||||||
Sbjct 1369 CAAGAGTTGTCCTGTTTTGTAAGCCTCAAATAA 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67921337385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5