BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493322
Length=785
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15630.1 | Symbols: | Uncharacterised protein family (UPF04... 1105 0.0
> AT4G15630.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr4:8917430-8918852 FORWARD LENGTH=839
Length=839
Score = 1105 bits (598), Expect = 0.0
Identities = 733/795 (92%), Gaps = 22/795 (3%)
Strand=Plus/Plus
Query 1 CTCTTTCTTCTCATTTTGACTCTCTTCACTTCTTTTTGATCCCTAAATGGAACACGAGAG 60
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 52 CTCTTTCCTCTCATTTTGACCCTCTTCACTTCTTTTTGATCCCTAAATGGAACACGAGAG 111
Query 61 CAAGACCAAAATGGATGGGATGGAGATGGAGAAAGGaaaaaaaGAGAATGGGTCGAGAAA 120
||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 112 CAAGAACAAGGTGGATGGGATGGAGATGGAGAAAGGAAAAAAAGAGAGTGGGTCGAGAAA 171
Query 121 AGGAGTTGAGATAACGATGAGAGTGCTGGCTTTGGTCCTAACAATGGTAGCTGCGACAGT 180
|||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 172 AGGACTTGAGTTAACGATGAGAGTTTTGGCTTTGGTCCTAACAATGGTAGCTGCGACAGT 231
Query 181 ACTTGGTGTCGCGAAACAGACAGAGGTTGTACCTATAAAGCTTATTCCTACTTTGCCTCC 240
||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||| |||||
Sbjct 232 ACTTGGTGTTGCGAAACAAACAAAGGTTGTGCCTATAAAGCTTATTCCTACTTTACCTCC 291
Query 241 TCTTAATGTCGCTACAACCGCCAAAGCCTCTTACTTGTCTGCTTTTGTGTACAACATTTC 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TCTTAATGTCTCTACAACCGCCAAAGCCTCTTACTTGTCTGCTTTTGTGTACAACATTTC 351
Query 301 TGCAAACGCGATAGCTTGCGGTTACACAGCGATCTCGATAGTGAGTGTGATGATCAGCAA 360
||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct 352 TGCAAACGCGATAGCTTGCGGTTACACCGCGATCTCAATAGTGATTGTGATGATCAGCAA 411
Query 361 AGGCAGAAGAAGCAAAGGCTTGTTAATGGCGGTATTGATAGGAGATCTTATGATGGTGGC 420
||||| |||||||||| | ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 412 AGGCAAAAGAAGCAAAAGTTTGTTGATGGCGGTCTTGATAGGAGATCTTATGATGGTGGC 471
Query 421 TTTACTATTTTCGAGCACCGGAGCCGCCGGAGCAATCGGGCTAATGGGTAGGCATGGGAA 480
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TTTACTGTTTTCCAGCACTGGAGCCGCCGGAGCAATCGGGCTAATGGGTAGGCATGGGAA 531
Query 481 CAAACATGTTATGTGGAAGAAAGTTTGTGGAGTGTTTGGCAAATTCTGTAACCAAGCTGC 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CAAACATGTTATGTGGAAAAAAGTTTGTGGAGTGTTTGGCAAATTCTGTAACCAAGCTGC 591
Query 541 TGTTTCTGTTGCTATCACTCTTATTGCTTCAGTTGTTTTTATGCTTCTTGTTGTTCTTGA 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 592 TGTTTCTGTTGCTATCACTCTTATTGCTTCAGTTGTGTTTATGCTTCTTGTTGTTCTTGA 651
Query 601 TGCTTTGAAGCTTCCTTAATTTCTTAAGTAAAC-C--CTTTTAACCAGAAAAACACAGAA 657
||||||||| |||||||||| |||||||| || | |||| |||||||||| |||| ||
Sbjct 652 TGCTTTGAAACTTCCTTAAT--CTTAAGTACACGCAACTTTAAACCAGAAAA-CACAAAA 708
Query 658 CAAATTTTCTT-TCTTAATTTGCATGTTTCTATTTCTTGTCGTTTT--GTGTTATGTGAA 714
|| |||| || |||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 709 TAAGTTTT-TTCTCTTAATTTGCATGTTTCTATTTCTTGTCGTTTTTTGTGTTATGTAAA 767
Query 715 GTCATTACTCATTATCATCAATAATGTAATTGTCTATTTGttt-tttt---AACGTTTTA 770
||||||| |||| | || || |||| |||||||||||||| |||| || ||||||
Sbjct 768 GTCATTA-TCATCA--AT---TA-TGTAGTTGTCTATTTGTTTGTTTTTTTAA-GTTTTA 819
Query 771 AATTCCATTGTCTAT 785
|||| ||||| ||||
Sbjct 820 AATTTCATTGCCTAT 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38177951720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5