BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493326
Length=2542
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15560.1 | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulo... 4032 0.0
AT3G21500.2 | Symbols: DXPS1 | 1-deoxy-D-xylulose 5-phosphate s... 601 1e-170
AT4G15510.1 | Symbols: | Photosystem II reaction center PsbP f... 165 2e-39
> AT4G15560.1 | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulose-5-phosphate
synthase | chr4:8883907-8887565 FORWARD LENGTH=2776
Length=2776
Score = 4032 bits (2183), Expect = 0.0
Identities = 2430/2549 (95%), Gaps = 18/2549 (1%)
Strand=Plus/Plus
Query 1 AAATTTTATTCTCCATAAATCTTTATAT-TACTTACTTACATTCCCAAAGTTTTCAACTT 59
||||||||||||| ||||||| |||||| | ||||||||||||| |||||||||||| |
Sbjct 228 AAATTTTATTCTCTATAAATCCTTATATGT-TTTACTTACATTCCTAAAGTTTTCAAC-T 285
Query 60 TCTCTTCTGAGGTTCAAAAAGT---TGAAATGGCTTCATCTGCATTTGCTTTTCCTTCTT 116
| || | |||| |||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 286 T-TC-T-TGAGCTTCAAAAAGTACCTCCAATGGCTTCTTCTGCATTTGCTTTTCCTTCTT 342
Query 117 ACATAATAACCAAAGGAGGAGTTTCAACAGATTCTTGTAAATCAACTTCTTTGTCTTCTT 176
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 343 ACATAATAACCAAAGGAGGACTTTCAACTGATTCTTGTAAATCAACTTCTTTGTCTTCTT 402
Query 177 CTCGATCTTTGGTTACAGATCTTTCATCGCCATGTCTCAGACCCAACAACAATTCCCATA 236
|| |||||||||||||||||||| |||| |||||||| | |||||||||||||||||||
Sbjct 403 CTAGATCTTTGGTTACAGATCTTCCATCACCATGTCTGAAACCCAACAACAATTCCCATT 462
Query 237 CAAACAGAAGAGCAAAAGTGAATGCTTCACTTGCAGAGAAGGGTGAATATTATTCAAACA 296
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 463 CAAACAGAAGAGCAAAAGTGTGTGCTTCACTTGCAGAGAAGGGTGAATATTATTCAAACA 522
Query 297 GACCACCAACTCCATTACTTGACACTATTAACTATCCAATTCACATGAAAAATCTTTCTG 356
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 523 GACCACCAACTCCATTACTTGACACTATTAACTACCCAATCCACATGAAAAATCTTTCTG 582
Query 357 TCAAGGAGCTGAAACAACTTTCTGATGAGCTGAGATCAGATGTGATCTTTAATGTGTCGA 416
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 583 TCAAGGAACTGAAACAACTTTCTGATGAGCTGAGATCAGACGTGATCTTTAATGTGTCGA 642
Query 417 AAACCGGTGGACATTTGGGGTCGAGTCTTGGTGTTGTGGAGCTTACTGTGGCT-TTGCAT 475
|||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||
Sbjct 643 AAACCGGTGGACATTTGGGGTCAAGTCTTGGTGTTGTGGAGCTTACTGTGGCTCTT-CAT 701
Query 476 TACATTTTCAATACTCCACAGGATAAGATTCTTTGGGATGTTGGTCATCAGTCTTATCCT 535
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 702 TACATTTTCAATACTCCACAAGACAAGATTCTTTGGGATGTTGGTCATCAGTCTTATCCT 761
Query 536 CACAAGATTCTTACTGGGAGAAGAGGAAAGATGCCTACAATGAGGCAAACCAATGGTCTC 595
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CATAAGATTCTTACTGGGAGAAGAGGAAAGATGCCTACAATGAGGCAAACCAATGGTCTC 821
Query 596 TCGGGTTTCACGAAGCGAGGAGAGAGCGAACATGATTGCTTTGGTACCGGACACAGTTCA 655
|| |||||||| || ||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 822 TCTGGTTTCACCAAACGAGGAGAGAGTGAACATGATTGCTTTGGTACTGGACACAGCTCA 881
Query 656 ACCACAATATCTGCTGGTTTAGGAATGGCGGTAGGACGGGATTTGAAGGGGAAGAACAAC 715
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 882 ACCACAATATCTGCTGGTTTAGGAATGGCGGTAGGAAGGGATTTGAAGGGGAAGAACAAC 941
Query 716 AATGTGGTTGCTGTGATTGGTGATGGTGCAATGACGGCAGGGCAGGCTTATGAAGCCATG 775
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 942 AATGTGGTTGCTGTGATTGGTGATGGTGCGATGACGGCAGGACAGGCTTATGAAGCCATG 1001
Query 776 AACAACGCTGGCTATCTTGACTCTGATATGATTGTGATTCTTAATGACAACAAGCAAGTC 835
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 AACAACGCCGGATATCTAGACTCTGATATGATTGTGATTCTTAATGACAACAAGCAAGTC 1061
Query 836 TCATTACCTACAGCTACTTTGGATGGACCAAGTCCACCTGTTGGAGCATTGAGCAGTGCT 895
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1062 TCATTACCTACAGCTACTTTGGATGGACCAAGTCCACCTGTTGGTGCATTGAGCAGTGCT 1121
Query 896 CTTAGTCGGTTACAGTCTAACCCGGCTCTCAGAGAGTTGAGAGAAGTCGCAAAGGGTATG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 CTTAGTCGGTTACAGTCTAACCCGGCTCTCAGAGAGTTGAGAGAAGTCGCAAAGGGTATG 1181
Query 956 ACAAAGCAAATAGGTGGACCAATGCATCAGTTGGCTGCTAAGGTAGATGAGTATGCCCGA 1015
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1182 ACAAAGCAAATAGGCGGACCAATGCATCAGTTGGCGGCTAAGGTAGATGAGTATGCTCGA 1241
Query 1016 GGAATGATAAGCGGGACTGGATCGTCACTGTTTGAAGAACTTGGTCTTTACTATATTGGT 1075
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1242 GGAATGATAAGCGGGACTGGATCGTCACTGTTTGAAGAACTCGGTCTTTACTATATTGGT 1301
Query 1076 CCAGTTGATGGGCACAACATAGATGATTTGGTAGCCATTCTTAAAGAAGTTAAGAGTACT 1135
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 CCAGTTGATGGGCACAACATAGATGATTTGGTAGCCATTCTTAAAGAAGTTAAGAGTACC 1361
Query 1136 AGAACCACAGGACCGGTACTTATTCATGTGGTGACGGAGAAAGGTCGCGGTTACCCTTAC 1195
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1362 AGAACCACAGGACCTGTACTTATTCATGTGGTGACGGAGAAAGGTCGTGGTTATCCTTAC 1421
Query 1196 GCGGAGAGAGCTGATGACAAATACCATGGTGTTGTGAAATTCGATCCAGCGACGGGTAAA 1255
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 1422 GCGGAGAGAGCTGATGACAAATACCATGGTGTTGTGAAATTTGATCCAGCAACGGGTAGA 1481
Query 1256 CAGTTCAAAAGTACTAATAAGACGCAATCTTACACTACTTACTTTGCGGAGGCATTAGTG 1315
|||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1482 CAGTTCAAAACTACTAATAAGACTCAATCTTACACAACTTACTTTGCGGAGGCATTAGTC 1541
Query 1316 GCAGAAGCAGAGGTAGACAAAGATGTGGTTGCGATTCATGCAGCCATGGGAGGTGGGACC 1375
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1542 GCAGAAGCAGAGGTAGACAAAGATGTGGTTGCGATTCATGCAGCCATGGGAGGTGGAACC 1601
Query 1376 GGGTTAAATCTCTTTCAACGTCGCTTCCCAACAAGATGTTTCGATGTCGGAATAGCGGAA 1435
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1602 GGGTTAAATCTCTTTCAACGTCGCTTCCCAACAAGATGTTTCGATGTAGGAATAGCGGAA 1661
Query 1436 CAACACGCAGTTACTTTTGCTGCGGGTTTAGCCTGTGAAGGCCTTAAGCCCTTCTGTGCA 1495
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1662 CAACACGCAGTTACTTTTGCTGCGGGTTTAGCCTGTGAAGGCCTTAAACCCTTCTGTGCA 1721
Query 1496 ATCTATTCATCCTTCATGCAGCGTGCTTATGACCAGGTTGTACATGATGTTGATTTGCAA 1555
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1722 ATCTATTCGTCTTTCATGCAGCGTGCTTATGACCAGGTTGTCCATGATGTTGATTTGCAA 1781
Query 1556 AAATTACCAGTGAGATTTGCGATGGATAGAGCTGGACTTGTTGGAGCTGATGGTCCAACA 1615
|||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 1782 AAATTACCGGTGAGATTTGCAATGGATAGAGCTGGACTCGTTGGAGCTGATGGTCCGACA 1841
Query 1616 CATTGTGGAGCTTTTGATGTGACATTTATGGCTTGTCTTCCTAACATGATTGTGATGGCT 1675
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1842 CATTGTGGAGCTTTCGATGTGACATTTATGGCTTGTCTTCCTAACATGATAGTGATGGCT 1901
Query 1676 CCATCAGATGAAGCAGATCTGTTTAACATGGTTGCAACCGCTGCTGCGATTGATGATCGT 1735
|||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct 1902 CCATCAGATGAAGCAGATCTCTTTAACATGGTTGCAACTGCTGTTGCGATTGATGATCGT 1961
Query 1736 CCTTCTTGTTTCCGTTACCCTAGAGGTAATGGTATTGGAGTTGCATTACCTCCCGGTAAC 1795
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1962 CCTTCTTGTTTCCGTTACCCTAGAGGTAACGGTATTGGAGTTGCATTACCTCCCGGAAAC 2021
Query 1796 AAAGGTGTTCCAATTGAGATTGGAAAAGGTAGGATTTTAAAGGAAGGAGAGAGGGTTGCG 1855
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 2022 AAAGGTGTTCCAATTGAGATTGGGAAAGGTAGAATTTTAAAGGAAGGAGAGAGAGTTGCG 2081
Query 1856 CTGTTGGGTTATGGCTCAGCAGTTCAGAGCTGTTTAGGAGCGGCTGTAATGCTTGAAGAA 1915
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2082 TTGTTGGGTTATGGCTCAGCAGTTCAGAGCTGTTTAGGAGCGGCTGTAATGCTCGAAGAA 2141
Query 1916 CGCGGATTAAACGTAACTGTAGCAGATGCACGATTTTGCAAGCCATTGGACCGTGCTCTC 1975
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2142 CGCGGATTAAACGTAACTGTAGCGGATGCACGGTTTTGCAAGCCATTGGACCGTGCTCTC 2201
Query 1976 ATTCGCAGCTTAGCTAAGTCGCATGAGGTTCTGATCACGGTTGAAGAAGGTTCGATTGGA 2035
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2202 ATTCGCAGCTTAGCTAAGTCGCACGAGGTTCTGATCACGGTTGAAGAAGGTTCCATTGGA 2261
Query 2036 GGGTTTGGATCGCACGTTGTTCAGTTTCTTGCTCTCGATGGTCTTCTCGATGGCAAACTC 2095
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2262 GGTTTTGGCTCGCACGTTGTTCAGTTTCTTGCTCTCGATGGTCTTCTTGATGGCAAACTC 2321
Query 2096 AAGTGGAGACCAATGGTACTGCCTGATCGGTACATTGATCACGGTGCACCAGCTGATCAA 2155
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2322 AAGTGGAGACCAATGGTACTGCCTGATCGATACATTGATCACGGTGCACCAGCTGATCAA 2381
Query 2156 CTAGCTGAAGCTGGACTCATGCCATCTCACATCGCAGCAACCGCACTTAACTTAATCGGT 2215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2382 CTAGCTGAAGCTGGACTCATGCCATCTCACATCGCAGCAACCGCACTTAACTTAATCGGT 2441
Query 2216 GCACCAAGGGAAGCTCTGTTTTGAGAACAAGAATCGGTTGGCTAAAACATATATATACAA 2275
|||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||
Sbjct 2442 GCACCAAGGGAAGCTCTGTTTTGAGAGTAAGAATCTGTTGGCTAAAACATATGTATACAA 2501
Query 2276 ACACTCTAAATGCAACCCAAGGTTTCTTCTAAGTACTTGATGAAAATTCCCGCCGAAAAG 2335
||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |||
Sbjct 2502 ACACTCTAAATGCAACCCAAGGTTTCTTCTAAGTACT-GATCAGAATTCCCGCCGAGAAG 2560
Query 2336 TCCTTTGGCAACAGCTATATAT-TT-ACTAAGATGGTGAAGAGAAAGGCAAAGGCAAAGG 2393
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 2561 TCCTTTGGCAACAGCTATATATATTTACTAAGATTGTGAAGAGAAAGGCAAAGGCAAAGG 2620
Query 2394 TTGTGCAAAGATTAGTATTATGGTAAAACTGGTATTTGTTTTGTAATTTTTGGTTAGGGG 2453
|||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 2621 TTGTGCAAAGATTAGTATTATGATAAAACTGGTATTTGTTTTGTAATTTT-GTTTAGGAT 2679
Query 2454 TGTGATGGAGATCGAGTTGTACAATAATCATCTAACATCTTGTAAAAATAAATTACATTT 2513
|||||||||||||| |||||||||||||| | |||||||||||||||| |||||||| |
Sbjct 2680 TGTGATGGAGATCGTGTTGTACAATAATC-T--AACATCTTGTAAAAATCAATTACATCT 2736
Query 2514 CTTTGTGTATCTTTCATACCATTGTGTGA 2542
|||||||||||||||||| | ||||||||
Sbjct 2737 CTTTGTGTATCTTTCATAGCTTTGTGTGA 2765
> AT3G21500.2 | Symbols: DXPS1 | 1-deoxy-D-xylulose 5-phosphate
synthase 1 | chr3:7573634-7576623 REVERSE LENGTH=2228
Length=2228
Score = 601 bits (325), Expect = 1e-170
Identities = 547/654 (84%), Gaps = 16/654 (2%)
Strand=Plus/Plus
Query 270 CAGAGAAGGGTGAATATTATTCAAACAGACCACCAACTCCATTACTT-GACACTATTAAC 328
||||||| |||||||||||||||||||||||||||||||| ||| || ||||| || |||
Sbjct 184 CAGAGAAAGGTGAATATTATTCAAACAGACCACCAACTCCTTTA-TTGGACACAATCAAC 242
Query 329 TATCCAATTCACATGAAAAATCTTTCTGTCAAGGAGCTGAAACAACTTTCTGATGAGCTG 388
||||||| |||||||||||||| || |||| || || ||| ||||| || ||| ||
Sbjct 243 CATCCAATGCACATGAAAAATCTCTCCATCAAAGAACTCAAAGTTCTTTCGGACGAGTTG 302
Query 389 AGATCAGATGTGATCTTTAATGTGTCGAAAACCGGTGGACATTTGGGGTCGAGTCTTGGT 448
||||| ||||| || |||||||| |||||||| || ||||| ||||| |||| |||||||
Sbjct 303 AGATCTGATGTTATTTTTAATGTTTCGAAAACTGGAGGACACTTGGGTTCGAATCTTGGT 362
Query 449 GTTGTGGAGCTTACTGTGG-CTTTGCATTACATTTTCAATACTCCACAGGATAAGATTCT 507
||||| ||||| || |||| | || |||||||| ||||||||||| || |||||||| ||
Sbjct 363 GTTGTTGAGCTCACCGTGGCCCTT-CATTACATCTTCAATACTCCTCATGATAAGATCCT 421
Query 508 TTGGGATGTTGGTCATCAGTCTTATCCTCACAAGATTCTTACTGGGA-GAAGAGGAAAGA 566
||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct 422 TTGGGATGTTGGTCATCAGTCTTATCCTCACAAGATTCTAAC-GGGAAGAAGAGGAAAGA 480
Query 567 TGCCTACAATGAGGCAAACCAATGGTCTCTCGGGTTTCACGAAGCGAGGAGAGAGCGAAC 626
|| ||||| ||||| |||||||| ||||| || | ||| |||||| ||||||| || |
Sbjct 481 TGAAGACAATAAGGCAGACCAATGGCCTCTCCGGCTACACCAAGCGAAGAGAGAGTGAGC 540
Query 627 ATGATTGCTTT-GGTACCGGACACAGTTCAACCACAATATCTGCTGGTTTAGGAATGGCG 685
|||| | |||| || ||||| |||||||| |||||| ||||||| || ||||| |||||
Sbjct 541 ATGACT-CTTTTGGCACCGGGCACAGTTCGACCACACTATCTGCAGGCTTAGGGATGGCT 599
Query 686 GTAGG-ACGGGATTTGAAGGGGAAGAACAACAATGTGGTTGCTGTGATTGGTGATGGTGC 744
||||| | ||||||||||||||| |||||||| |||||| | || || || ||||||||
Sbjct 600 GTAGGGA-GGGATTTGAAGGGGATGAACAACAGCGTGGTTTCGGTTATAGGCGATGGTGC 658
Query 745 AATGACGGCAGGGCAGGCTTATGAAGCCATGAACAACGCTGGCTATCTTG-ACTCTGATA 803
||||| || || || ||||||||||| |||||||| |||||||| ||| |||| | |
Sbjct 659 TATGACAGCTGGACAAGCTTATGAAGCAATGAACAATGCTGGCTA-CTTACACTCCAACA 717
Query 804 TGATTGTGATTCTTAATGACAACAAGCAAGTCTCATTACCTACAGCTA-CTTTGGATGGA 862
||||||||||||| || |||||||| ||||| || || ||||| |||| ||| |||||||
Sbjct 718 TGATTGTGATTCTCAACGACAACAAACAAGTATCTTTGCCTACTGCTAACTT-GGATGGA 776
Query 863 CCAAGTCCACCTGTTGGAGCAT-TGAGCAGTGCTCTTAGTCGGTTACAGTCTAA 915
|||| || |||||||||||| | ||||| ||||||||||| || | || |||||
Sbjct 777 CCAACTCAACCTGTTGGAGC-TCTGAGCTGTGCTCTTAGTAGGCTGCAATCTAA 829
> AT4G15510.1 | Symbols: | Photosystem II reaction center PsbP
family protein | chr4:8860616-8862665 FORWARD LENGTH=1085
Length=1085
Score = 165 bits (89), Expect = 2e-39
Identities = 155/183 (85%), Gaps = 19/183 (10%)
Strand=Plus/Plus
Query 27 ATTACTTACTTACATTCCCAAAGTTTTCAACTTTCTCTTCTGAGGTTCAAAAAGT----T 82
||||| | |||||| | |||||| |||||| || | ||||||| |||||||| | |
Sbjct 32 ATTAC-T-CTTACAGT-CCAAAG-TTTCAA--TT-T-TTCTGAGCTTCAAAAA-TCCACT 82
Query 83 GAAATGGCTTCATCTGCATTTGCTTTTCCTTCTTACATAATAACCAAAGGAGGAGTTTCA 142
||||||||||||||||||||| ||||||||||||||||||||| || ||||| |||
Sbjct 83 CTAATGGCTTCATCTGCATTTGCGTTTCCTTCTTACATAATAACC-AA--AGGAGCCTCA 139
Query 143 ACAGATTCTTGT-AAATCAACTTCTTTGTCTTCTTCTCGATCTTTGGTTACAGATCTTTC 201
|||||||||| | |||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 140 ACAGATTCTT-TCAAATCAACTTCTCTGTCTTCTTCTCGATCTTTGGTTACAGAT-TTCC 197
Query 202 ATC 204
|||
Sbjct 198 ATC 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126169861645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5