BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493327
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15550.1 | Symbols: IAGLU | indole-3-acetate beta-D-glucosyl... 2135 0.0
> AT4G15550.1 | Symbols: IAGLU | indole-3-acetate beta-D-glucosyltransferase
| chr4:8877590-8879327 REVERSE LENGTH=1738
Length=1738
Score = 2135 bits (1156), Expect = 0.0
Identities = 1342/1432 (94%), Gaps = 11/1432 (1%)
Strand=Plus/Plus
Query 1 ATGGCCAACAACAATAATTCAAACTCTCCCACCGGTCCACACTTTCTATTCGTAACATTT 60
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 27 ATGGCCAACAAC---AATTCCAACTCTCCCACCGGTCCACACTTTCTATTCGTAACATTT 83
Query 61 CCAGCACAAGGTCACATCAACCCATCTCTCGAGCTAGCCAAACGCCTCGCCGGAACCATC 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 84 CCAGCCCAAGGTCACATCAACCCATCTCTCGAGCTAGCCAAACGCCTCGCCGGAACAATC 143
Query 121 TCCGGTGCTCGAGTCACCTTCGCCGCCTCAATCTCCGCCTACAACCGCCGCATGTTCTCT 180
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 144 TCTGGTGCTCGAGTCACCTTCGCCGCCTCAATCTCTGCCTACAACCGCCGCATGTTCTCT 203
Query 181 CA-AGAAAACGTCCCTGAAACCCTAATCTTCGCTACCTACTCCGATGGCCACGACGACGG 239
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 -ACAGAAAACGTCCCCGAAACCCTAATCTTCGCTACCTACTCCGATGGCCACGACGACGG 262
Query 240 TTTCAAATCCTCTACTTCCTCCG-CTAAATCCCGTCAAGACGCCACCGGAAACTTCATGT 298
||||||||||||| ||| ||||| | ||||| |||||||||||||| |||||||||||||
Sbjct 263 TTTCAAATCCTCTGCTTACTCCGAC-AAATCTCGTCAAGACGCCACTGGAAACTTCATGT 321
Query 299 CTGAGATGAGACGACGTGGCAAGGAGACACTAACCGAACTAATCGAAGATAACCGGAATC 358
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 322 CTGAGATGAGACGACGTGGCAAAGAGACACTAACCGAACTAATCGAAGATAACCGGAAAC 381
Query 359 AAAACCGGCCTTTCACTTGCGTGGTTTACACGATTCTCCTCACTTGGGTCGCTGAGCTAG 418
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 AAAACAGGCCTTTTACTTGCGTGGTTTACACGATTCTCCTCACTTGGGTCGCTGAGCTAG 441
Query 419 CGCGTGAGTTTCACCTTCCTTCTGCTCTTCTTTGGGTCCAACCTGTAACAGTCTTCTCCA 478
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 442 CGCGTGAGTTTCATCTTCCTTCTGCTCTTCTTTGGGTCCAACCAGTAACAGTCTTCTCCA 501
Query 479 TTTTTTACCATTACTTCAATGGCTACGAAGAAGCTATCTCAGAGATGGCTAATAACCCAT 538
||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| |
Sbjct 502 TTTTTTACCATTACTTCAATGGCTACGAAGATGCAATCTCAGAGATGGCTAATACCCCCT 561
Query 539 CTAGTTCTATTAAATTACCGTCTCTGCCACTACTCAGTCTCCGTGATCTTCCTTCATTCA 598
||||||||||||||||||| ||||||||||| || | | |||||||| ||||||| ||||
Sbjct 562 CTAGTTCTATTAAATTACCTTCTCTGCCACTGCTTACTGTCCGTGATATTCCTTCTTTCA 621
Query 599 TGGTCTCTTCCAATGTCTACGCGTTTCTTCTACCGGCTTTTCGAGAACAGATTGATTCAC 658
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 622 TTGTCTCTTCCAATGTCTACGCGTTTCTTCTACCCGCGTTTCGAGAACAGATTGATTCAC 681
Query 659 TGAAGGAAGAAGCAAACCCTAAGATCCTCATCAACACTTTCCAAGAGCTTGAACCAGAAG 718
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 682 TGAAGGAAGAAATAAACCCTAAGATCCTCATCAACACTTTCCAAGAGCTTGAGCCAGAAG 741
Query 719 CCATGAGCTCGGTTCCAGATAATTTCAAGATTGTTCCC-GTTGGTCCGTTATTAACCTTG 777
|||||||||||||||||||||||||||||||||| ||| || ||||||||| |||| |||
Sbjct 742 CCATGAGCTCGGTTCCAGATAATTTCAAGATTGT-CCCTGTCGGTCCGTTACTAACGTTG 800
Query 778 AGAACCGATTCATCGAGTCACGGTGAATACATAGAGTGGTTGGATACAAAAGCGGATTCG 837
||||| |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 801 AGAACGGATTTTTCGAGTCGCGGTGAATACATAGAGTGGTTGGATACTAAAGCGGATTCG 860
Query 838 TCTGTGCTTTACGTTTCGTTTGGGACACTTGCCGTGTTGACCAAGAAACAGCTTGTGGAG 897
||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct 861 TCTGTGCTTTATGTTTCGTTCGGGACGCTTGCCGTGTTGAGCAAGAAACAGCTTGTGGAG 920
Query 898 CTTTGTAAAGCGTTGATACAGAGTCGGAGACCGTTCTTGTGGGTGATTACGGACAAGTCG 957
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 921 CTTTGTAAAGCGTTGATACAAAGTCGGAGACCATTCTTGTGGGTGATTACGGATAAGTCG 980
Query 958 TATagaagtaaagaagatgagcaagagaaagaggaagattgcataaag-agtttcagaga 1016
|| |||| ||||||||||||||||||||| || ||||||||||||| | |||||||||||
Sbjct 981 TACAGAAATAAAGAAGATGAGCAAGAGAAGGAAGAAGATTGCATAA-GTAGTTTCAGAGA 1039
Query 1017 agagCTTGATGAGATAGGAATGGTGGTTTCTTGGTGCGATCAGTTTAGGGTTTTGAATCA 1076
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1040 AGAGCTCGATGAGATAGGAATGGTGGTTTCATGGTGTGATCAGTTTAGGGTTTTGAATCA 1099
Query 1077 TAGATCGATAGGTTGTTTCGTGACTCATTGCGGGTGGAACTCGACGTTGGAGAGCTTGGT 1136
|||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 1100 TAGATCGATAGGTTGTTTCGTGACGCATTGCGGGTGGAACTCTACGCTGGAGAGCTTGGT 1159
Query 1137 CTCGGGAGTTCCGGTGGTGGCGTTTCCGCAGTGGAATGATCAGATGACGAACGCGAAGCT 1196
|| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1160 TTCAGGAGTTCCGGTGGTGGCGTTTCCGCAATGGAATGATCAGATGATGAACGCGAAGCT 1219
Query 1197 TTTAGAAGATTGTTGGAAGACAGGTGTGAGAGTGATGGAGAAGAAGGAAGAGGACGGAGC 1256
|||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||
Sbjct 1220 TTTAGAAGATTGTTGGAAAACAGGTGTAAGAGTGATGGAGAAGAAGGAAGAAGAAGGAGT 1279
Query 1257 AGTGGTGGTGGAGAGTGGGGAGATACGGCGGTGCATTGAGGAAGTGATGGAGGAGAAGGC 1316
||||||||||| |||| ||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1280 TGTGGTGGTGGATAGTGAGGAGATACGGCGGTGCATTGAGGAAGTTATGGAAGACAAGGC 1339
Query 1317 GGAGGAGTTTAGAGGAAACGCGGCGAGGTGGAAGGATTTAGCGGCGGAGGCGGTGAGAGA 1376
|||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||
Sbjct 1340 GGAGGAGTTTAGAGGAAATGCCACGAGGTGGAAGGATTTAGCGGCGGAGGCTGTGAGAGA 1399
Query 1377 AGGTGGCTCTTCCTTTAATCATCTCAAAGCTTTTGCCGATGAGCACATGTGA 1428
||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1400 AGGAGGCTCTTCCTTTAATCATCTCAAAGCTTTTGTCGATGAGCACATGTGA 1451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70381164090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5