BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493329
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15540.1 | Symbols: | EamA-like transporter family | chr4:8... 1724 0.0
AT5G40240.2 | Symbols: | nodulin MtN21 /EamA-like transporter ... 431 8e-120
AT3G28050.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 58.4 2e-07
> AT4G15540.1 | Symbols: | EamA-like transporter family | chr4:8873355-8875344
FORWARD LENGTH=1241
Length=1241
Score = 1724 bits (933), Expect = 0.0
Identities = 1089/1162 (94%), Gaps = 19/1162 (2%)
Strand=Plus/Plus
Query 1 AATCTATCATGAGAGAAGAGACAGTTTCTTGGAAGTACTTTAAAAGAGATGTTGTTCCGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 32 AATCTATCATGAGAGAAGAGACAGTTTCTTGGAAGTACTTTAAAAGAGATGTTGTTCCGT 91
Query 61 TCGCTGCGATGATCGC-AGTGGAGTGTACAACTGTTGGATCGAGCACACTGTATAAAGCT 119
|| ||||||||||||| | | ||||||||||| |||||||| |||| |||||||||||||
Sbjct 92 TCACTGCGATGATCGCTA-TAGAGTGTACAACGGTTGGATCCAGCATACTGTATAAAGCT 150
Query 120 GCTACCTTAAGAGGATTTAGCTTTTATGTCTTTGTGTTTTACTCTTATGTTGGTGCTACA 179
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 151 GCTACCTTGAGAGGATTTAGCTTTTATGTCTTTGTGTTTTACGCTTATGTTGGTGCTACA 210
Query 180 CTAGTTCTTCTTCTACTTTCCCTTATCTTTGGAAGGTCGAGAAGTTTACCTACAGCCAAG 239
|| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 211 CTTGTCCTTCTTCTACTTTCACTTATCTTTGGAAGGTCGAGAAGTTTGCCTACAGCCAAG 270
Query 240 TCTCCTCTCTTCTTCAAGATTTTCTTACTTGCGCTTCTCGGGCTCACGTCGAAGGTAGCT 299
||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 271 TCTTCTCTTTTCTTCAAGATTTTCTTACTTGCGCTTCTCGGGCTCACGTCGCGGGTAGCT 330
Query 300 GGTTGTAAAGGTATAGAATATAGTTCCCCAACTCTTTCCTCTGCTATCAGCAATCTTACA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 GGTTGTAAAGGTATAGAATATAGTTCCCCAACTCTTTCCTCTGCTATCAGCAATCTTACA 390
Query 360 CCAGCTTTCACCTTCATGCTTGCCGTCTTCTTCAGGATGGAACAAGTAGTGTTAAGAAGC 419
||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||
Sbjct 391 CCAGCTTTCACCTTCATCCTTGCCATCTTCTTCAGGATGGAACAAGTAATGTTAAGAAGC 450
Query 420 TCTGCAACTCAGGCTAAAATCATTGGCACAATAGTCTCTATATCTGGCGCTCTGGTTATT 479
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 451 TCTGCAACTCAGGCTAAAATCATTGGCACAATAGTTTCTATATCTGGTGCTCTGGTTATT 510
Query 480 GTTCTGTATAAAGGCCCAAAACTTCTTGTTGCTGCATCGTTTACTTCGTTCGAGTCTAGT 539
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 511 GTTCTGTATAAAGGCCCAAAACTTCTTGTTGCTGCATCGTTTACTTCATTCGAGTCAAGT 570
Query 540 TGGATAATTGGAGGCCTTTTGCTCGGTCTGCAATTCTTGCTTCTTTCAGTCTGGTTTATT 599
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 571 TGGATAATTGGAGGCCTTTTGCTCGGTCTGCAGTTTTTGCTTCTTTCAGTCTGGTTTATT 630
Query 600 CTTCAGACTCATATCATGGAGATATACCCTGAAGAAATAGTTGTAGTCTTCTGCTACAAC 659
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 631 CTTCAGACTCATATCATGGAGATATACCCTGAAGAAATAGCCGTAGTCTTCTGCTACAAC 690
Query 660 TTATGCGCAACGCTAATCTCAGGGATAGTATGTCTACTTGCAGAAAAAGACTTGAATTCT 719
||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 691 TTATGCGCAACTCTAATCTCAGGGACAGTATGTCTACTTGTAGAAAAAGACTTGAATTCT 750
Query 720 TGGCAGCTTAAACCTGGTTTCTCCCTCGCTTCAGTCATATACTCGGGACTCTTTGATACA 779
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 TGGCAGCTTAAACCAGGTTTCTCCCTCGCTTCAGTCATATACTCGGGACTCTTTGATACA 810
Query 780 TCATTGGGCTCAGTTATCCACACATGGGGTCTTCATGTGAAGGGTCCGGTCTACGTATCC 839
|||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct 811 TCATTGGGCTCAGTTATCCACACATGGGGTCTCCATGTGAAGGGTCCAGTCTACATATCC 870
Query 840 TTGTTCAAGCCATTGTCTATTGCAATTGCAGTCGCCATGGCTGCTATATTCCTCGGCGAT 899
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 871 TTGTTCAAGCCGCTGTCTATCGCAATTGCAGTCGCCATGGCTGCTATATTCCTCGGCGAC 930
Query 900 TCGCTTCACCTTGGGAGTGTGATTGGATCAGTGATATTGAGCTTTGGGTTTTACACTGTG 959
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 ACACTTCATCTTGGGAGTGTGATTGGATCAGTGATATTGAGCTTTGGGTTTTACACTGTG 990
Query 960 ATTTGGGGCAAAGCAAGAGAGGATGCAACTATAACAGTAAGTGATTCTGAGCAGTCACTT 1019
|||||||||||||||||||||||| |||| | ||||||||||||||||||||| ||||||
Sbjct 991 ATTTGGGGCAAAGCAAGAGAGGATTCAACCAAAACAGTAAGTGATTCTGAGCAATCACTT 1050
Query 1020 TTATTGCCT--ACAC-AC-GAG-------T--AAACCTTCTCATGAAGATATGTCGGAGA 1066
||||||||| |||| || ||| | ||||||| ||||||| |||||| |||||
Sbjct 1051 TTATTGCCTTCACACGACAGAGAAGAAGATTGAAACCTTGTCATGAAAATATGTTGGAGA 1110
Query 1067 CAAGTGAAAATATTTTTCTTATTTG-TTCATAATTATGGTCCCATTAGAAAATGA--ATC 1123
|||||| || | ||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 1111 CAAGTGTAA-TCGTTTTCTTATTTTATTCATAATTATGGTCCCATTAGATGATGATGATC 1169
Query 1124 CTTATTTATCTTGTAAGTTGTA 1145
| ||||||||||||||||||||
Sbjct 1170 CCTATTTATCTTGTAAGTTGTA 1191
> AT5G40240.2 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr5:16082125-16084810 REVERSE LENGTH=1349
Length=1349
Score = 431 bits (233), Expect = 8e-120
Identities = 422/512 (82%), Gaps = 18/512 (4%)
Strand=Plus/Plus
Query 531 GAGTCTAGTTGGATAATTGGAGGCCTTTTGCTCGGTCTGCA-A-T-TCTTGCTTCTTTCA 587
||||| || |||||||| ||||| || ||||| | || || | | | || ||| | ||
Sbjct 613 GAGTCAAGCTGGATAATCGGAGGGCTCTTGCT-TG-CTTCACAGTAT-TTTCTTATATCC 669
Query 588 GTCTGGTTTATTCTTCAGACTCATATCATGGAGATATACCCTGAAGAAATAGTTGTAGTC 647
||||||| |||||||||||||| | |||||||| | ||||||||||| ||| ||||||
Sbjct 670 GTCTGGTATATTCTTCAGACTCGTGTCATGGAGGTTTACCCTGAAGAGATAACCGTAGTC 729
Query 648 TTCTGCTACAACTTATGCGCAACGCTAATCTCAGGGA-TAGTATGTCTACTTGCAGA-AA 705
|||| |||||| |||| ||||| ||||||||| | | ||||||||| |||| || |
Sbjct 730 TTCTTCTACAATTTATTTGCAACACTAATCTCA-GTACCAGTATGTCTTTTTGCGGAGAG 788
Query 706 AAGACTTGAATTCTTGGCAGCTTAAACCTG-GTTTCTCCCTCGCTTCAGTCATATACTCG 764
| |||||| ||||||| ||||||||| | || ||||||||| || |||||||||||
Sbjct 789 CA-ACTTGACTTCTTGGGTGCTTAAACCAGACATT-TCCCTCGCTGCAATCATATACTCG 846
Query 765 GGACTCTTTGATACATCATTGGGCTCAG-TTATCCACACATGGGGTCTTCATGTGAAGGG 823
||| |||| | | ||| ||| || | | ||| ||||||||||||||| ||| |||||||
Sbjct 847 GGAGTCTTCGTTTCATTATTCAGCGC-GCTTACCCACACATGGGGTCTGCATCTGAAGGG 905
Query 824 TCCGGTCTACGTATCCTTGTTCAAGCCATTGTCTATTGCAATTGCAGTCGCCATGGCTGC 883
|||||| ||| |||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 906 TCCGGTATACATATCCTTGTTCAGGCCATTGTCTATTGCGATTGCAGTCGCCATGGGTGC 965
Query 884 TATATTCCTCGGCGATTCGCTTCACCTTGGGAGTGTGATTGGATCAGTGATATTGAGCTT 943
|||||||||||||||| | ||||||||||||||||| ||||||||| |||||||| || |
Sbjct 966 TATATTCCTCGGCGATGCACTTCACCTTGGGAGTGTCATTGGATCAATGATATTGTGCAT 1025
Query 944 TGGGTTTTACACTGTGATTTGGGGCAAAGCAAGAGAGGATGCAA-CTATAACAGTAAG-T 1001
||| || ||||||||||||||||||||||||||||||||| ||| | | ||| ||| | |
Sbjct 1026 TGGATTCTACACTGTGATTTGGGGCAAAGCAAGAGAGGATACAATCAA-AACTGTA-GCT 1083
Query 1002 GATTCTGAGCAGTCACTTTTATTGCCTACACA 1033
| |||||||||||||| ||| ||| ||||||
Sbjct 1084 GGTTCTGAGCAGTCACCTTTGCTGCTTACACA 1115
> AT3G28050.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr3:10442814-10445398 FORWARD LENGTH=1456
Length=1456
Score = 58.4 bits (31), Expect = 2e-07
Identities = 106/141 (75%), Gaps = 9/141 (6%)
Strand=Plus/Plus
Query 841 TGTTCAAGCCATTGTCTATTGCAATTGCAGTCGCCATGGCTGCTATATTCCT-CGGCGAT 899
|||||||||||||||||||||||||||| || || |||| | ||| ||||| || |||
Sbjct 1009 TGTTCAAGCCATTGTCTATTGCAATTGCTGTTGCAATGGGAGTTATCTTCCTGCGA-GAT 1067
Query 900 TCGCT-TCACCTTGGGAG-TGTGATTGGATCAGTGATATTGAGCTTT-GGGTTTTACACT 956
|| || | || | || || | |||| || || | || | | | | |||||||||||
Sbjct 1068 TCTCTCT-ACATCGGCAGCT-TGATCGGGGCAACGGTAATAA-CAATCGGGTTTTACACG 1124
Query 957 GTGATTTGGGGCAAAGC-AAG 976
|| || ||||| ||||| |||
Sbjct 1125 GTAATGTGGGGAAAAGCCAAG 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57429423480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5