BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493336
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15520.1 | Symbols: | tRNA/rRNA methyltransferase (SpoU) fa... 1354 0.0
> AT4G15520.1 | Symbols: | tRNA/rRNA methyltransferase (SpoU)
family protein | chr4:8862815-8864618 FORWARD LENGTH=935
Length=935
Score = 1354 bits (733), Expect = 0.0
Identities = 884/954 (93%), Gaps = 22/954 (2%)
Strand=Plus/Plus
Query 1 AGAAGACGACGACGATGGTGGGATTTGAGAGCTATGTGGTTGTTCACAACATAGCAAAGC 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGACGACGACGATGGCGGGATTTGAGAGCTATGTGGTTGTTCACAACATAGCAAAGC 60
Query 61 GTCACAACGTCGGAACTTTAGCTCGTAGCGCTACTGCTTTTGGTGTGACGGAGTTAATCC 120
||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 61 GTCACAACGTCGGAACTTTAGCTCGTAGCGCCACTGCCTTTGGTGTGACGGAGCTAATCC 120
Query 121 TCGTGGGTCGCCGTGACTTCAACGCCTTCGGTAGTCATGGTTCAGCTTCTCACATCCGTT 180
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGTCGGTCGCCGTGATTTCAACGCCTTCGGTAGTCATGGTTCAGCTTCTCACATCCGTT 180
Query 181 TCCGCCATTTTCACTCACTTATCGAAGCTCGCACCTATCTCAAGGAGGAGAAAGATTGCG 240
|||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 TCCGCCATTTTCACTCTCTCATCGAAGCTCGCAACTATCTCAAGGAGGAGAAAGATTGCG 240
Query 241 ATATTTGCGGCGTTGAGATTGCAGATGGAGCTTCTGCTGTTAACGAACATCCTTTCAAAA 300
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 241 ATATATGCGGCGTTGAGATTGCAGATGGAGCTTCTGCGGTTAATGAACATCCTTTCAAAA 300
Query 301 GAAACACTGCGTTTCTTCTTGGTAATGAGGGATCAGGATTATCTGCCAAGGAATATGAAA 360
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 301 GAAACACTGCGTTTCTTCTCGGTAATGAGGGATCAGGATTATCTGCGAAGGAATACGAAA 360
Query 361 TTTGCGACTTCTTTGTATATATTCCTCAATATGGCTGTGGCACTGCCTCCTTAAATGTTA 420
| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 361 TATGCGACTTCTTTGTATATATTCCTCAGTATGGCTGTGGCACTGCCTCTTTGAATGTTA 420
Query 421 CTGTTGCAGCTTCTATCGTTTTGCATCATTTTGGAGTTTGGGCTGGATTTTCTGAGCGTG 480
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 421 CTGTTGCAGCTTCTATTGTTTTGCATCACTTTGGAGTTTGGGCTGGATTTTCTGAACGTG 480
Query 481 TCCGGGATGGAAGCAAATTTATAGTGGCTGATAGACCCGTAAGACAAGGAAGACGGAATT 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 TTCGGGATGGAAGCAAATTTATAGTGGCTGATAGACCCGTAAGACAAGGAAGACGAAATT 540
Query 541 TCTGTGCCGGCACAGAAGAATCCATCATTGAAGAGCGGAAGTTGAGGAAAGAAAGTGCGG 600
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 541 TCTGCGCCGGCACAGAAGAATCCGTCATTGAAGAGCGGAAGTTGAGGAAAGAAAGTGCAG 600
Query 601 AAAATGGTTTTTTCGATGACGATGGAAACGGAAATGGAAGTTCATCATCCGACCTTTTGG 660
||||||| |||||||||||| ||||||| | |||||||||||||||||||||||||||||
Sbjct 601 AAAATGGGTTTTTCGATGACAATGGAAATGAAAATGGAAGTTCATCATCCGACCTTTTGG 660
Query 661 ACGGTTTGTTCCTTGACGAATAATTGTCTTTGA-AAAAGAACAAAAACTTGTTTTGGGTT 719
|||||||||||||| |||||||||| ||||| | ||||||||||| |||| ||||||||
Sbjct 661 ACGGTTTGTTCCTTAACGAATAATTATCTTTTATAAAAGAACAAAGTCTTGATTTGGGTT 720
Query 720 CCAATCCTGGGAAGATGAGGCGCACACCCTTCAATATATATTGTCAAGCGGAGTTAGCTT 779
||||||||||||| | | ||| ||||||||||||||| |||||| |||||||||
Sbjct 721 CCAATCCTGGGAA-A-----C--ACATCCTTCAATATATATTATCAAGCA-AGTTAGCTT 771
Query 780 ACTCACGCTTGTTCATTCCCTAGTTACCGAATCTTCGTTTCGCAAGTAGAGAAAGCTTAT 839
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 772 ACTCACGCTTGTTCATTCCCTAGTTACCGAATCTTTGTTTCGCAAGTTGAGAAAGCTTAT 831
Query 840 TGA-TTACGCGAAGTTGATTACTTGGTTTTGACTAATTGATCTGCCTTTGGTATGATACT 898
|| ||| || ||||||||| ||| || | | ||||||||||||||||||||||||
Sbjct 832 -GAATTAGGCTAAGTTGATT--TTGATT---A-T--TTGATCTGCCTTTGGTATGATACT 882
Query 899 ATGCTTATGAACATGTTTGAAATT-ATTTCAGTTGATAGAATCTCATTCCGCTG 951
||| |||||||||||||||||| | ||| ||||||||||||||||||| |||||
Sbjct 883 ATGATTATGAACATGTTTGAAAATGATT-CAGTTGATAGAATCTCATTACGCTG 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5