BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493338
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15510.1 | Symbols: | Photosystem II reaction center PsbP f... 1670 0.0
AT4G15560.1 | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulo... 185 6e-46
> AT4G15510.1 | Symbols: | Photosystem II reaction center PsbP
family protein | chr4:8860616-8862665 FORWARD LENGTH=1085
Length=1085
Score = 1670 bits (904), Expect = 0.0
Identities = 1022/1078 (95%), Gaps = 11/1078 (1%)
Strand=Plus/Plus
Query 1 ACCCAACCAAAACTCTCAA-TTTCACAGTGGATTACTCTTACATTCCCAAAGTTTCAATT 59
|||||||||||| |||||| |||| |||||||||||||||||| | ||||||||||||||
Sbjct 1 ACCCAACCAAAATTCTCAATTTTCCCAGTGGATTACTCTTACAGT-CCAAAGTTTCAATT 59
Query 60 TTTCTGAGCTTCAAAAATCCACTTTAATGGCTTCATCTGCATTTGCTTTTCCTTCTTACA 119
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 60 TTTCTGAGCTTCAAAAATCCACTCTAATGGCTTCATCTGCATTTGCGTTTCCTTCTTACA 119
Query 120 TAATAACCATAGGAGCTTCAACAGATTCTTGCAAACCAACTTCTCTGGCTTCTTCTCGAT 179
||||||||| |||||| ||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 120 TAATAACCAAAGGAGCCTCAACAGATTCTTTCAAATCAACTTCTCTGTCTTCTTCTCGAT 179
Query 180 CTTTGGTTACAGATTTCCATCTTTTGTTCTCCAGACCCATCTCTTCCGGTCCCAAGCACC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 180 CTTTGGTTACAGATTTCCATCTTTTGTTCTCCAGACCCATCTCTTCCGGTCCTAAATACC 239
Query 240 AATCTTCCAAGTCCGCTAAACCGGATTCTCCAGTTC-CCAGAAACTCG-TTAACCGATGC 297
||||| ||||||||||||||||||| ||||||| || ||| ||||| | |||||||||||
Sbjct 240 AATCTGCCAAGTCCGCTAAACCGGAATCTCCAG-TCGCCATAAACT-GCTTAACCGATGC 297
Query 298 CAAACAGGTTTGTGCAGTTGGGAGGAGGAGGAGCATGATGATGGGCTTGCTCATGTCTGG 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 298 CAAACAGGTTTGTGCAGTTGGGAGGAGGAAGAGCATGATGATGGGCTTGCTCATGTCTGG 357
Query 358 TTTAATGGTTTCTGAAGCCAATCTTCCAACAGCATTTGCTTCGACTTCAGTGTTTAGAGA 417
|||||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 358 TTTAATAGTTTCACAAGCCAATCTTCCAACAGCATTTGCTTCAACTCCAGTGTTTAGAGA 417
Query 418 ATACATAGATACATTTGATGGATACTCTTTCAAGTACCCTCAAAATTGGATCCAAGTCCG 477
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 418 ATACATAGATACATTTGATGGATACTCCTTCAAGTACCCTCAAAATTGGATCCAAGTCCG 477
Query 478 AGGAGCTGGCGCTGATATATTCTTTAGAGACCCTGTTGTCCTCGACGAGAATCTCTCAGT 537
||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 478 AGGAGCTGGTGCTGATATATTCTTTAGAGACCCTGTTGTCCTCGACGAGAACCTTTCAGT 537
Query 538 CGAGTTTTCTTCGCCTTCTTCCTCAAAATACACGTCACTTGAAGACTTGGGTTCCCCTGA 597
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 538 CGAGTTTTCTTCGCCTTCTTCCTCAAATTACACGTCACTTGAAGACTTGGGATCCCCTGA 597
Query 598 AGAAGTAGGAAAGAGAGTACTTAGACAGTACTTGACTGAGTTTATGTCCACTAGACTCGG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGAAGTAGGAAAGAGAGTACTTAGACAGTACTTGACTGAGTTTATGTCCACTAGACTCGG 657
Query 658 GGTTAAGCGCGAGGCCAACATTCTAAGCACTTCCTCCAGAATTGCAGATGATGGTAAACT 717
|||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 658 GGTTAAGCGCCAGGCCAACATTCTAAGCACTTCCTCTAGAGTTGCAGATGATGGTAAACT 717
Query 718 CTACTACCAAGTCGAGGTGAACATAAAGTCATACGCAAACAACAACGAGCTAGCTGTGAT 777
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTACTACCAAGTTGAGGTGAACATAAAGTCATACGCAAACAACAACGAGCTAGCTGTGAT 777
Query 778 GCCGCAAGATAGAGTGGCTCGTTTGGAATGGAACCGGCGCTACCTTGCAGTCCTAGGAGT 837
||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 778 GCCACAAGATCGAGTGGCTCGTTTGGAATGGAACCGGCGCTACCTTGCAGTTCTAGGAGT 837
Query 838 TGAGAACAACAGACTCTATTCAATTAGACTCCAAACACCTGAGAAAGTTTTCCTGGAAGA 897
||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 838 TGAGAACGATAGACTCTATTCAATTAGACTCCAAACACCCGAGAAAGTTTTCCTGGAAGA 897
Query 898 AGAAAAAGATCTAAGAAGAGTCATGGATTCGTTTAGGGTCGAGAAGATTTAGAATAGCTC 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 898 AGAAAAAGATCTAAGAAGAGTCATGGATTCGTTTAGGGTCGAGAAGATTTAGAAGAGCTC 957
Query 958 ACATTCTCCATGTGAATTTCTTCTTATTCCAAACCAAAAAATCTTGTTGCTGACTACATT 1017
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 958 ACATTCTCAATGTGAATTTCTTCTTATTCCAAACCAAAAAATCTTGTTGCTTACTACTTT 1017
Query 1018 -GATTACCAAAC-AA-AAC-GATTTTGATTCAGTTTATTGAGATGTCATTATGACATA 1071
||||||||||| || || |||||||||||| || |||||||||||||||||||||
Sbjct 1018 TGATTACCAAACTAATAAATGATTTTGATTCAAATT-TTGAGATGTCATTATGACATA 1074
> AT4G15560.1 | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulose-5-phosphate
synthase | chr4:8883907-8887565 FORWARD LENGTH=2776
Length=2776
Score = 185 bits (100), Expect = 6e-46
Identities = 149/171 (87%), Gaps = 9/171 (5%)
Strand=Plus/Plus
Query 37 CTTACATTCCCAAAG-TTTCAATTTTTC-TGAGCTTCAAAAA-TCCACTTTAATGGCTTC 93
|||||||||| |||| |||||| |||| ||||||||||||| | | || |||||||||
Sbjct 262 CTTACATTCCTAAAGTTTTCAA-CTTTCTTGAGCTTCAAAAAGTAC-CTCCAATGGCTTC 319
Query 94 ATCTGCATTTGCTTTTCCTTCTTACATAATAACCATAGGAG--CTT-CAACAGATTCTTG 150
|||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||
Sbjct 320 TTCTGCATTTGCTTTTCCTTCTTACATAATAACCAAAGGAGGACTTTCAACTGATTCTTG 379
Query 151 CAAACCAACTTCTCTGGCTTCTTCTCGATCTTTGGTTACAGAT-TTCCATC 200
||| |||||||| || |||||||| ||||||||||||||||| |||||||
Sbjct 380 TAAATCAACTTCTTTGTCTTCTTCTAGATCTTTGGTTACAGATCTTCCATC 430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5