BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493343
Length=1910
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein | ... 2918 0.0
> AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein
| chr4:8845875-8848869 FORWARD LENGTH=2053
Length=2053
Score = 2918 bits (1580), Expect = 0.0
Identities = 1804/1914 (94%), Gaps = 8/1914 (0%)
Strand=Plus/Plus
Query 1 TCAACAGCAATCTCTCTCTGAATCATGAGAGGTCACGATCGGATTAACAATTGCTTGCCG 60
||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 29 TCAACTGCAATCTCTCTCTGAACCATGAGAGGTCACGATCGGATTAACAATTGTTTGCCG 88
Query 61 GAGGAACTAATCCTCGAGATATTCCGGCGACTTGAATCGAAACCCAACCGCGACGCTTGC 120
|||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 89 GAGGAACTTATCCTCGAGATATTCCGGCGACTTGAATCGAAACCGAATCGCGACGCATGC 148
Query 121 TCTCTCGTCTGCAAACGATGGCTATCTCTCGAGCGATATAGCCGAACCACGCTTCGTATC 180
|| ||||||||||| |||||| ||||||||||||||| |||||| |||||||||||||||
Sbjct 149 TCCCTCGTCTGCAAGCGATGGTTATCTCTCGAGCGATTTAGCCGCACCACGCTTCGTATC 208
Query 181 GGCGCTTCATTTTCTTCCGAAGACTTCATCTCCCTTCTCTCTCGCCGCTTCCTCCATATT 240
|||||||| |||||| |||| |||||||||||||| || ||||| ||||| ||| |||||
Sbjct 209 GGCGCTTCGTTTTCTCCCGACGACTTCATCTCCCTCCTATCTCGTCGCTTTCTCTATATT 268
Query 241 ACATCCATTCATGTCGACGAGCGTCTCTCCGTCTCCCTTCCTTCTCTCTCTCCTTCCCCC 300
|| || || ||||||||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 269 ACCTCTATCCATGTCGACGAACGTATCTCCGTCTCCCTTCCTTCCCTCTCTCCTTCCCCA 328
Query 301 AAAAGAAAACGTGGGAGGGACAGTTTGTCGCCATCGTCGAGTAAGCGGAAGAAATTGATT 360
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 329 AAAAGAAAACGTGGGAGGGACAGTTCGTCGCCATCGTCGAGTAAGCGGAAGAAATTGACT 388
Query 361 GGTAATAAACATTCTGGAGCTGAGAATGTTGAGTCTTGTAGCTTGACTGATGCGGGTTTG 420
| ||| | |||||||||||||||||| || ||||||| |||||||||||| |||| |||
Sbjct 389 GATAAGACACATTCTGGAGCTGAGAACGTCGAGTCTTCCAGCTTGACTGATACGGGCTTG 448
Query 421 ACTGCTTTTGCTG-ATGGATTTCCAA-AAGTTGAAAACTTGAGCTTGATTTGGTGCCCTA 478
|||||| | || | |||||||||||| || | ||||||||||||||||| ||||||||||
Sbjct 449 ACTGCTCTAGC-GAATGGATTTCCAAGAA-TAGAAAACTTGAGCTTGATATGGTGCCCTA 506
Query 479 ATGTTTCAAGTGTGGGTTTGCGTTCTCTTGCTGAGAAGTGCATTTCACTTAAATCT-TTG 537
| |||||||||||||||||| |||| |||||| |||| |||| ||||||||||||| ||
Sbjct 507 ACGTTTCAAGTGTGGGTTTGTGTTCCCTTGCTCAGAAATGCACTTCACTTAAATCTCTT- 565
Query 538 GATTTACAGGGTTGCTATGTTGGAGATCAAGGCTTAGCAGCTGTTGGAAAGTTTTGTAAG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GATTTACAGGGTTGCTATGTTGGAGATCAAGGCTTAGCAGCTGTTGGAAAGTTTTGTAAG 625
Query 598 CAACTCGAAGAACTAAATCTGCGCTTTTGTGAAGGCTTAACCGATGTTGGAGTTATTGAC 657
||||| |||||||||||| |||||||||| ||||||||||| |||||||||||||||||
Sbjct 626 CAACTTGAAGAACTAAATTTGCGCTTTTGCGAAGGCTTAACTGATGTTGGAGTTATTGAT 685
Query 658 CTTGTTGTTGGTTGTGCGAAGTCCCTAAAGTCTATTGGTGTTGCTGCGTCAGCAAAAATT 717
||||||||||||||| | ||||| |||||||||| |||||||||||||||||||||||
Sbjct 686 CTTGTTGTTGGTTGTTCCAAGTCTTTAAAGTCTATCGGTGTTGCTGCGTCAGCAAAAATA 745
Query 718 ACAGATTTATCTCTGGAAGCAGTTGGTTCTCACTGTAAATTACTAGAAGTTCTGTATTTG 777
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 746 ACAGATTTATCTCTGGAAGCAGTTGGTTCTCACTGTAAATTACTAGAAGTTTTGTATTTG 805
Query 778 GATTCTGAATACATCCATGATAAAGGATTGATAGCGGTGGCTCAGGGATGCAACCGTTTG 837
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 806 GATTCTGAATACATCCATGATAAAGGATTGATAGCGGTGGCTCAGGGATGCCACCGTTTG 865
Query 838 AAAAATCTGAAGCTTCAATGTGTTGGTGTGACGGATAAGGCATTTGCTGCAGTGGGAGAC 897
|||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 866 AAAAATCTGAAGCTTCAATGTGTTAGTGTGACGGATGTGGCTTTTGCTGCAGTGGGAGAG 925
Query 898 TTGTGTACTTCGCTGGAACGATTGGCTTTGTATAGCTTTCAGAATTTTACTGACAAGGGC 957
|||||||||||| |||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 926 TTGTGTACTTCGTTGGAGCGATTGGCATTGTATAGCTTTCAGCATTTTACTGACAAGGGC 985
Query 958 ATGCGGGCCATCGGTAAAGGGTCTAAGAAGTTGAAAGATCTCACTCTAAGTGATTGCTAC 1017
||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 986 ATGCGAGCCATCGGTAAAGGGTCTAAGAAGTTGAAAGATCTTACTTTAAGTGATTGTTAC 1045
Query 1018 TTTGTGAGTTGCAAAGGTTTAGAAGCTATTGCTCATGGTTGTAAGGAACTTGAGCGTGTA 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 TTTGTGAGTTGCAAAGGTTTAGAAGCTATTGCTCATGGTTGTAAGGAACTTGAGCGTGTG 1105
Query 1078 GAAATTAATGGATGCCATAACATTGGTACACGTGGAATAGAGGCAATTGGAAATTTTTGC 1137
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1106 GAAATTAACGGATGCCACAACATTGGTACACGTGGAATAGAGGCAATTGGAAAATCTTGC 1165
Query 1138 CCGCGCCTCAAAGAGTTAGCTTTATTGTATTGCCAAAGGATTGGTAATTCCGCTCTTCAA 1197
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1166 CCGCGCCTCAAAGAGTTAGCTTTGTTGTATTGCCAAAGGATTGGTAATTCGGCTCTTCAA 1225
Query 1198 GAAATTGGAAAAGGCTGTAAATCCCTAGAAATACTTCACTTAGTAGACTGCTCAGGCATT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1226 GAAATTGGAAAAGGCTGTAAATCCCTAGAAATACTTCACTTAGTAGACTGCTCTGGCATT 1285
Query 1258 GGAGACAGCGCTATGTGCAGTATTGCTAAAGGCTGTCGCAACCTCAAGAAACTTCATATC 1317
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 GGAGACATCGCTATGTGCAGTATTGCTAAAGGCTGTCGCAACCTCAAGAAACTTCATATC 1345
Query 1318 CGCAGATGCTATGAGGTAGGAAACAAAGGAATTATAGCTATTGGAAAGCATTGCAAATCA 1377
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1346 CGCAGATGCTATGAGATAGGAAACAAAGGAATTATATCTATTGGAAAGCATTGCAAATCA 1405
Query 1378 CTAACCGAGCTTAGTCTCCGGTTTTGCGATAAAGTTGGAAATAAAGCGTTGATCGCCATT 1437
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1406 CTAACCGAGCTTAGTCTCCGGTTTTGCGATAAAGTTGGAAATAAAGCATTAATCGCCATT 1465
Query 1438 GGAAAAGGTTGCTCCTTACAACAACTAAACGTAAGTGGTTGTAATCAAATCAGCGATGCT 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 GGAAAAGGTTGCTCCTTACAACAACTAAACGTAAGTGGTTGTAATCAAATCAGCGATGCT 1525
Query 1498 GGAATATCAGCAATCGCCAGAGGCTGTCCTCAACTCACTCACCTCGACATTAGTGTTCTT 1557
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 GGAATAACAGCAATCGCCAGAGGCTGTCCTCAACTCACTCACCTCGACATTAGTGTTCTT 1585
Query 1558 CAGAACATTGGAGACATGCCGTTGGCTGAGCTTGGAGAAGGATGTCCAATGCTGAAAGAC 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 CAGAACATTGGAGACATGCCGTTGGCTGAGCTTGGAGAAGGATGTCCAATGCTGAAAGAC 1645
Query 1618 TTGGTTTTGTCCCATTGCCACCATATAACAGACACTGGTCTGAACCATCTTGTACAGAAA 1677
||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1646 TTGGTCTTGTCTCATTGCCACCATATAACAGACAATGGTCTGAACCATCTTGTACAGAAG 1705
Query 1678 TGCAAACTTCTGGAGAGTTGTCACATGGTTTACTGCCCAGGGATCACTTCCGCTGGAGTG 1737
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 TGCAAACTTCTGGAGACTTGTCACATGGTTTACTGCCCAGGGATCACTTCCGCTGGAGTG 1765
Query 1738 GCTACAGTCGTCTCGAGCTGTCCACACATCAAGAAAG-TGTTGATAGAGAAATGGAAAGT 1796
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1766 GCTACAGTCGTCTCGAGCTGTCCACACATCAA-AAAGGTGTTGATAGAGAAATGGAAAGT 1824
Query 1797 GACCGAGAGGACGACAAGGAGAGCTGGATCTGTTATCTCTTATTTATGCATGGATCTCTA 1856
||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1825 GACTGAGAGGACGACAAGGAGAGCTGGATCGGTTATCTCTTATCTATGCATGGATCTCTA 1884
Query 1857 GATCGTAATTTCAAGGTTGGTTTAGAAGATTTGTGTTTATGTTTTCTGAATAAA 1910
||||||||||||||||| |||| ||||||| |||||||||||||| ||||||
Sbjct 1885 GATCGTAATTTCAAGGTCAGTTTCTAAGATTTATGTTTATGTTTTCTTAATAAA 1938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94577826780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5