BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493344
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15470.1 | Symbols: | Bax inhibitor-1 family protein | chr4... 1552 0.0
> AT4G15470.1 | Symbols: | Bax inhibitor-1 family protein | chr4:8843567-8845810
FORWARD LENGTH=1170
Length=1170
Score = 1552 bits (840), Expect = 0.0
Identities = 969/1027 (94%), Gaps = 25/1027 (2%)
Strand=Plus/Plus
Query 1 CAACCAGATCTGCTTTCGAAGAC---TCGTAGCTA-TAGCCATGGAGAAACCGTACGGAT 56
||||||||||||||||||||||| || |||||| |||||||||| |||||||||||||
Sbjct 55 CAACCAGATCTGCTTTCGAAGACGAATC-TAGCTATTAGCCATGGACAAACCGTACGGAT 113
Query 57 ACGCGAGCGTGAGCATGAGCGGCATAGATCGTTCCGCCGGAAAGGATATTGATCTTGAGA 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 ACGCGAGCGTGAGCATGAGCGGCATAGATCGTTCCGCCGGAAAGGATATTGATCTTGAGA 173
Query 117 TGGGAGTCGGAGAAGCGACGCTTTATCCTGGGCTAAGTTATGGCGAGAATCAGCTCCGAT 176
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 174 TGGGAGTCGGAGAAGCGACGCTTTATCCTGGGCTAAGTTACGGCGAGAATCAGCTCCGAT 233
Query 177 GGGGATTTATTCGTAAGGTCTATGGAATTCTCTCGGCTCAGCTTCTTCTCACGACGCTTA 236
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 234 GGGGATTTATTCGTAAGGTCTATGGGATTCTCTCAGCTCAGCTTCTTCTTACGACGCTTA 293
Query 237 TCTCCGCCGTCGTTGTTCTTAATCCTCCTGTTAACGATGTCTTAACCGGATCTCCTGGGA 296
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 294 TCTCCGCCGTCGTTGTTCTTAATCCTCCTGTTAACGATCTCTTGACCGGATCTCCTGGGA 353
Query 297 TTCTTCTCTTCCTTTGCATCGT-CCCTTTCATCTTAATCTGGCCTCTACACATTTACCAC 355
||||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 354 TTCTTCTCTTCCTCTGCATCGTTCCCTT-CATCTTAATCTGGCCTCTGCACATTTACCAC 412
Query 356 CAGAAGCATCCTGTTAACCTTATCCTCCTTGCCCTCTTCACTGTCTCATTGAGTTTCACC 415
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 413 CAGAAGCATCCTGTTAACCTGATCCTCCTTGCCCTCTTCACTGTTTCATTGAGTTTCACT 472
Query 416 GTTGGTGTCAGTTGTGCTATGACAGAAGGAAGAATTGTGCTTCAAGCCTTGATATTGACT 475
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 473 GTTGGTGTCAGTTGTGCTATGACAGAAGGACGAATTGTGCTACAAGCCTTGATATTGACT 532
Query 476 CTGTCTGTGGTTGGATCTCTAACCGCATACACTTTCTGGGCTGCAAAGAAAGGGAAA-GA 534
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 533 CTGTCTGTGGTCGGATCTCTAACCGCATACACTTTCTGGGCTGCAAAGAA-GGGAAAAGA 591
Query 535 CTTCAGCTTCCTTGGACCCATTCTCTTCACCAGCCTCATCATTCTTGTTGTGACCAGCTT 594
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 592 CTTCAGCTTCCTTGGACCCATTCTCTTCACCAGCCTCATCATTCTTGTAGTGACCAGCTT 651
Query 595 CATCCAGATGTTCTTCCCTCTTGGCCCGACTTCTATTGCCATATATGGAGGAATCAGTGC 654
|||||||||||||||||||||||||||||||||| ||||| |||| |||||| |||||||
Sbjct 652 CATCCAGATGTTCTTCCCTCTTGGCCCGACTTCTGTTGCCGTATACGGAGGATTCAGTGC 711
Query 655 ATTGGTATTCTGCGGATACATAGTCTATGATACCGACAACCTCATAAAGCGTTTCACATA 714
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 712 CTTGGTATTCTGCGGATACATAGTCTATGATACCGACAACCTCATCAAGCGTTTCACATA 771
Query 715 TGACGAATACATCCTAGCATCAGTGGCTCTCTACTTGGACATCCTCAATCTCTTCTTGAC 774
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 772 TGACGAATACATCCTAGCATCAGTAGCTCTCTACTTGGACATCCTCAATCTCTTCTTGAC 831
Query 775 CATATTGCGTATACTGAGGCAAGGTGACAACTGAAAGGCATAAAACGATGCTTCAGTGAT 834
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 832 CATATTGCGTATACTGAGGCAAGGCGACAACTGAAAGGCATAAAACGATGCTTCAGTGAT 891
Query 835 GTGATCC-GATTTATAACTAAAAGCAGAATCCAAATGCCTTTATGTGTGTGTATATCTGA 893
||||||| | |||||||||| ||| |||||||||| |||||||||||||| ||||||||
Sbjct 892 GTGATCCAG-TTTATAACTATAAG-AGAATCCAAAAGCCTTTATGTGTGT--ATATCTGA 947
Query 894 CTTCTGTTTTGAGTAT-A--TATGATGATGCTATGTGGTTAAACGATTGGTA-AA-CAAA 948
|||||||| ||| || | ||| ||||||||||||||||||||||||| || || ||||
Sbjct 948 TTTCTGTTTGGAGAATTAAGTAT-ATGATGCTATGTGGTTAAACGATTGATATAAACAAA 1006
Query 949 ATCAAGAAAAAGTCGATTTTCAACTT-AA-TAAATTTGTTAATTTTGGCGGAAGTTTT-A 1005
|||||| || ||||||||||||||| || ||||||||||||||||||||||| |||| |
Sbjct 1007 ATCAAGCAAT-GTCGATTTTCAACTTCAAATAAATTTGTTAATTTTGGCGGAA-TTTTGA 1064
Query 1006 TACCTTT 1012
| |||||
Sbjct 1065 TGCCTTT 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50485317735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5