BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493348
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15417.1 | Symbols: ATRTL1, RTL1 | RNAse II-like 1 | chr4:88... 815 0.0
> AT4G15417.1 | Symbols: ATRTL1, RTL1 | RNAse II-like 1 | chr4:8821717-8823076
FORWARD LENGTH=922
Length=922
Score = 815 bits (441), Expect = 0.0
Identities = 513/548 (94%), Gaps = 3/548 (1%)
Strand=Plus/Plus
Query 1 TCTTGTCTCTATGGGATCGCAACTCTCAAACACAGTCGTCGAAGGTGAAGATAACACCAA 60
||||||||||||||||||||||||||||||| || |||| ||| |||||||||||||
Sbjct 33 TCTTGTCTCTATGGGATCGCAACTCTCAAACGCA---ATCGACGGTAAAGATAACACCAA 89
Query 61 AACCATCGGATCAACCGCTCCGGACCAGCTTTTGGAGATCGAATCCTTGGAGAAGATCTT 120
||||||||||||| | | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 90 AACCATCGGATCAGCGGATCCGGACCAGCTTATGGAGATCGAATCCTTGGAGAAGATCTT 149
Query 121 AAATTACAAGTTCAAAGACAAGAGATTGTTGGTGCAAGCGTTTACAGACGCTAGTTACGT 180
|||||||||||||||||||||||| |||||| || ||||||| |||||||||||||||||
Sbjct 150 AAATTACAAGTTCAAAGACAAGAGTTTGTTGCTGAAAGCGTTCACAGACGCTAGTTACGT 209
Query 181 TGATGATAAGTGTGATTCGTACGAAATCCTAGAACTTTTAGGAGATTCGATCCTAAATAT 240
|||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 210 TGATGACAAGAGTGAATCGTACGAACTCCTAGAACTTTTAGGAGATTCGATCCTAAATAT 269
Query 241 GAGTATAATCTATGAGTTTATTAAGCTTTACCCTAAAGAATCACCTGGTCCGTTGACCAA 300
| ||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 270 GGGTATAATCTATGATTTTATTAAGCTCTACCCTAAAGAAGCACCTGGTCCGTTGACCAA 329
Query 301 GCTCCGAGCCGTTAACGTAGACACCGAGAAATTGGCCCGGGTCGCTGTAAAACACCAACT 360
|||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 330 GCTCCGAGCCGTCAACGTAGATACCGAGAAATTGGCACGGGTCGCTGTAAATCACCAACT 389
Query 361 CTATCGCTACCTCCGTCATAAGAAACCCTTGCTTGAGGAGCAAATACTGGAATTTGTGGA 420
|||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 390 CTATAGCTATCTCCGTCATAAGAAACCCTTGCTTGAGGAGCAAATACTAGAATTTGTGGA 449
Query 421 AGCCATGGAAAAATATCCACTACATTCAAATGGTCTTTTGAAAGTTCCTAAAGTTCTAGC 480
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 450 AGCCATGGAAAAATATCCATTACATTCAAATGGTCTTTTAAAAGTTCCTAAAGTTCTAGC 509
Query 481 AGACATAGTAGAGTCTACCATTGGAGCTCTCTTCATGGACTGCAACTCCACTGAGACCGT 540
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 510 AGACATAGTAGAGTCTACCATTGGAGCTATCTTCATGGACTGCAACTCCACCGAGACCGT 569
Query 541 CTGGGAGG 548
|||| |||
Sbjct 570 CTGGAAGG 577
Score = 167 bits (90), Expect = 1e-40
Identities = 104/111 (94%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 545 GAGGATAAGTTCGTTGGATGTGGACAACATCCTGTGAAGAAAGAAACTGCTCGTAATTTC 604
||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 727 GAGGATAAGTTTGTTGGATGTGGTCACCATCCTGTCAAGAAAGAAACTGCTCGTAATTTC 786
Query 605 GCTGCAAAAAATGCTATCGACAATTTTTCTAAATTCTTCGGAGACCTTTAG 655
||||||||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 787 GCTGCAAAAAATGCTATTGACAATTTTGCTAAATTTTTCGGAGACCTTTAG 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31647512610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5