BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493352
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15400.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1989 0.0
> AT4G15400.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr4:8811928-8813478 REVERSE LENGTH=1551
Length=1551
Score = 1989 bits (1077), Expect = 0.0
Identities = 1332/1455 (92%), Gaps = 17/1455 (1%)
Strand=Plus/Plus
Query 1 TCATTACCTCAATCTTGTTACCCGTTGACTTTTAAGGGAAGACGATGGAAGCGAAGCTAG 60
||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 7 TCAATACTTCAATCTTGTAACCCGTTGACTTTTAAAGGAAGACGATGGAAGCGAAGCTAG 66
Query 61 AGGTGGCTGCGAGAGAAGTGATCAAACCTGCTTCACCATCACCTCGTGATCGCCTTCAAC 120
||||| | | || ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 67 AGGTGACCGGGAAAGAAGTGATCAAACCTGCTTCACCATCACCTCGTGATCGCCTTCAGC 126
Query 121 TCTCTATCCTCGATCTCTATTGTCCCGCAATCTACGTGTCGACGATCTTCTTCTACGATC 180
|||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 127 TCTCTATCCTTGATCTCTATTGTCCTGGAATCTACGTGTCGACGATCTTCTTCTACGATC 186
Query 181 TCGAT-AAC-ATGTCCCCGGAAATTTTGTCGGAAAATCTGAAAAGCTCTCTGTCCGAGAC 238
|| || | | | |||| |||| |||| ||||||||||||||| |||||||||||||||
Sbjct 187 TC-ATCACCGA-GTCCTCGGAGGTTTTCTCGGAAAATCTGAAACTCTCTCTGTCCGAGAC 244
Query 239 TTTGTCACGCTTCTATCCACTGGCTGGACGAATAGAAGGCGTTTCCATCAGCTGTAACGA 298
| | ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 245 TCTCTCACGCTTCTATCCACTAGCTGGACGAATAGAAGGCCTTTCCATCAGCTGTAACGA 304
Query 299 TGAAGGAGCCGTGTACACCGAGGCTCGCACCAATCTCCTT-TTACCTGATTTCCTGAGAA 357
||||||||||| | ||||||||| |||||| |||||||| || ||||||||||| ||||
Sbjct 305 CGAAGGAGCCGTCTTCACCGAGGCACGCACCGATCTCCTTCTT-CCTGATTTCCTTAGAA 363
Query 358 ACCTCAACACTGACTGCCTGTCGGGATTCCTCCCGACAATAGCCGCTGGAGATTCTCCAG 417
||||||||||||||| |||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 364 ACCTCAACACTGACTCCCTGTCGGGATTCCTCCCGACACTAGCTGCTGGAGAATCTCCAG 423
Query 418 CGGCTTGGCCCTTGTTGAGTGTCAAGGTCACTTTCTTCGGGTCGGGATCTGGGGTGGCGG 477
|||| ||||| |||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 424 CGGCCTGGCCGTTGTTGAGTGTCAAGGTCACTTTCTTCGGGTCTGGATCAGGAGTGGCGG 483
Query 478 TTTCTGTCTCTGTCTCTCACAAAATCTGTGATGCAGCCTCATTGGTGACCTTTGTTAAAG 537
|||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||
Sbjct 484 TTTCTGTCTCTGTCTCTCACAAAATCTGTGATATAGCCTCATTGGTTACCTTTGTAAAAG 543
Query 538 ACTGGGCTACCACTACGGCCAAAGGGAAGTCAAACAGTACTATTGAGTTCGCTGAAACGA 597
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 544 ACTGGGCTACCACCACGGCCAAAGGGAAGTCAAACAGTACTATCGAGTTCGCTGAAACGA 603
Query 598 CTATTTATCCTCCTCCTCCTCCTTCCCATATGTATTTAGAGTTCCCATCAACGGATTCCG 657
||||||| ||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 604 CTATTTA---TCCTCCTCCTCCTTCTCATATGTATGAACAGTTCCCATCAACGGATTCCG 660
Query 658 ATTCTAACATCGCAAATAAATGTGTAATCAAAAGATTCGTCTTCGAACCCTCTAAGATAG 717
||||||||||| ||| ||||| ||| |||||||||||||||||||||| |||||||| |
Sbjct 661 ATTCTAACATCACAAGTAAATACGTACTCAAAAGATTCGTCTTCGAACCTTCTAAGATTG 720
Query 718 CTGAGCTCAGGCACAAGGCCGCTAGCGAAAGCGTTTCTGTACCTACACGTGTTGAAGCTA 777
||||||| | ||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 721 CTGAGCTGAAACACAAGGCCGCTAGCGAAAGCGTCCCTGTGCCTACACGTGTTGAAGCTA 780
Query 778 TCATGTCACTTATTTGGAGATGTGCCAGAAAATCCTCACGCTTTAACTTGGTAATTCCAA 837
||||||||||||| ||||||||||| ||||| |||||||||| ||||||| |||||||||
Sbjct 781 TCATGTCACTTATCTGGAGATGTGCTAGAAACTCCTCACGCTCTAACTTGTTAATTCCAA 840
Query 838 GGCAAACAGTGATGTGGCAGGCCATGGAC-TTGCGGCTTAGGATTCCATCTAATGTTTTG 896
||||| | || |||||||||||||||||| || || |||||||||||||||| |||| |
Sbjct 841 GGCAAGCCGTCATGTGGCAGGCCATGGACATT-CGACTTAGGATTCCATCTAGTGTTGCG 899
Query 897 CCACAAGACGTGATTGGCAACCTAC-AATCAGGATTCTCTCTCAAGAAAGACGCGGAGAG 955
||| ||||||||||||| ||||||| || | ||||| |||||||||||||||||||||||
Sbjct 900 CCAAAAGACGTGATTGGTAACCTACAAAGC-GGATTTTCTCTCAAGAAAGACGCGGAGAG 958
Query 956 CGAGTTTGAGATCCCCGAAATCGTGGCGGCATTCAGGAAGACCAAAGAAG-GAGTCAACG 1014
||||||||||||||| ||||||||||| |||||||||||| ||||| || |||||||||
Sbjct 959 CGAGTTTGAGATCCCTGAAATCGTGGCCACATTCAGGAAGAACAAAG-AGAGAGTCAACG 1017
Query 1015 AGATGATCAAAGAGAGTGTCCAAAGCAATACAACTGGTCAGAGTTTGTTGAGTTTGATGG 1074
||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1018 AGATGATCAAAGAGAGTCTTCAAGGCAATACAATTGGTCAGAGTTTGTTGAGTTTGATGG 1077
Query 1075 CGGAAACAGTGTCAGAGTCAGCGGACATAGACCGATACATAATGTCTAGCTGGTGCAGAA 1134
||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1078 CGGAAACTGTGTCAGAGTCAACGGAGATAGACCGATACATAATGTCTAGCTGGTGCAGAA 1137
Query 1135 AGCCATTCTACGAGGTTGACTTCGGATCTGGTAGTCCGGTCTGGGTGGGATACGCGTCAC 1194
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1138 AGCCTTTCTACGAGGTTGACTTCGGATCGGGTAGTCCGGTCTGGGTGGGATACGCGTCAC 1197
Query 1195 ATACCAATTACGACAACATGGTGTGG-GTCATGTTGATTGATTCAAAAGAAGGTGATGGT 1253
|||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 1198 ATACCATTTACGACAACATGGTG-GGTGTCGTGTTGATTGATTCAAAAGAAGGTGATGGT 1256
Query 1254 GTAGAAGCATGGATAAGCTTACCTGAGGAAGACATGTCTGTGTTTGTCGATGACCAAGAG 1313
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1257 GTAGAAGCATGGATAAGCTTACCTGAGGAAGACATGTCCGTGTTTGTCGATGACCAAGAG 1316
Query 1314 TTGCTTGCTTATGCTGTCCTAAATCCCCCGGTCTTGACCTAAACAAGACTACTACCAATT 1373
|||||||||||||| |||||||||||||||||| || | |||||||||||||||||||||
Sbjct 1317 TTGCTTGCTTATGCCGTCCTAAATCCCCCGGTCGTGGCATAAACAAGACTACTACCAATT 1376
Query 1374 GCTCTATGCTGGATTTACTAAATTCTTGGCTTTTGCGTTTCGTTGTGATCTGAATAAAGT 1433
|||||| |||||||||| | |||| |||||||| || |||||||||||| ||||||||||
Sbjct 1377 GCTCTACGCTGGATTTAATTAATTATTGGCTTTCGCTTTTCGTTGTGATTTGAATAAAGT 1436
Query 1434 GAACAGTCATTTCAA 1448
|| || |||||||||
Sbjct 1437 GACCAATCATTTCAA 1451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74347007145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5