BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493364

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15248.1 | Symbols:  | B-box type zinc finger family protein...   592    1e-168


> AT4G15248.1 | Symbols:  | B-box type zinc finger family protein 
| chr4:8708848-8709373 FORWARD LENGTH=526
Length=526

 Score =  592 bits (320),  Expect = 1e-168
 Identities = 386/418 (92%), Gaps = 3/418 (1%)
 Strand=Plus/Plus

Query  1    aagagagagtaaagatgtgcaaaggag-ttgagaaaaaagaagagagaagaaaCGACGAT  59
            |||| |||||||||||||| | ||| | |||||||| ||||||||||||||| |||| ||
Sbjct  20   AAGAAAGAGTAAAGATGTGTAGAGG-GTTTGAGAAAGAAGAAGAGAGAAGAAGCGACAAT  78

Query  60   GGAGGATGCCAAAGACTATGCACGGAGAGTCCCAGAGCTCCGGTGAGCTGTGAGCTTTGC  119
            ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct  79   GGAGGATGCCAAAGACTATGCACGGAGAGTCACAAAGCTCCGGTAAGCTGTGAGCTTTGC  138

Query  120  GGCGAGAACGCCACCGTGTATTGTGAGGCAGACGCGGCTTTCCTTTGTAGGAAATGTGAT  179
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  139  GGCGAGAACGCCACCGTGTATTGTGAGGCAGACGCAGCTTTCCTTTGTAGGAAATGCGAT  198

Query  180  CGATGGGTCCATTCTGCTAATTTTCTTGCTCGGAGACATCTCCGGCGCGTGATCTGCACG  239
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  199  CGATGGGTCCATTCTGCTAATTTTCTAGCTCGGAGACATCTCCGGCGCGTGATCTGCACG  258

Query  240  ACCTGTCAGAAGTTAACTCGTCAATGTCTTGTCGGTGATAGTTTTAATGTCGTTTTACCG  299
            ||||||| |||| ||||||||| ||||||||||||||||| ||||||||| |||||||||
Sbjct  259  ACCTGTCGGAAGCTAACTCGTCGATGTCTTGTCGGTGATAATTTTAATGTTGTTTTACCG  318

Query  300  GAGATAAGGACGATGGCAAGGGTTGAAGAAGATAGTAGTGATCACAAAGTCCCCTTTGTG  359
            |||||||||| ||| |||||| |||||||| ||||||||||||||||| | |||||||||
Sbjct  319  GAGATAAGGATGATAGCAAGGATTGAAGAACATAGTAGTGATCACAAAATTCCCTTTGTG  378

Query  360  TTTCTCTGATTTCTTTGTTTTATTTTTCTCGTAATGAAGATTAAATCTTGGTAAGGTT  417
            |||||||||||| | |||||| |||||| |||||| |||||||||| |||||| ||||
Sbjct  379  TTTCTCTGATTT-TATGTTTTGTTTTTCGCGTAATTAAGATTAAATATTGGTAGGGTT  435



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20660044839


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5