BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493365
Length=1753
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15240.1 | Symbols: | Protein of unknown function (DUF604) ... 2540 0.0
> AT4G15240.1 | Symbols: | Protein of unknown function (DUF604)
| chr4:8703075-8705378 REVERSE LENGTH=1815
Length=1815
Score = 2540 bits (1375), Expect = 0.0
Identities = 1640/1765 (93%), Gaps = 29/1765 (2%)
Strand=Plus/Plus
Query 1 ATGAACCAAACGAGACGTAAGAGACGACCTGATCCATCTCTCTCTAGACTCGATTCGCTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1 ATGAACCAAACGAGACGTAAGAGACGACCTGATTCATCTCTCTCTAGACTCGATTCTCTT 60
Query 61 TCGCCGGAAATGCTCTTTCCGGCCAAATCTCCGTCGTTTACTTCTTCCCGCATCAGATAC 120
|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||
Sbjct 61 TCGCCGGAAATGCTCTTTCCGGCCAAATCTCCGTCGCTAACTTCTTCTCGCATCAGAAAC 120
Query 121 ATCTTCTTGTTACTCACCTTTTGTTTCATCATCTACATCATCTTCTCCTACGGCACCACT 180
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 ATCTTCTTATTACTCATCTTTTGTTTCATCATCTACATCATCTTCTCCTACGGCACCAAT 180
Query 181 TTCCGCCGTGAACAGATTTCATCGATCGCTCGTTCCTTATCTGTGTTCTCCACTCGTCGC 240
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 181 TTCCGCCGTGAACAGATTTCATCAATCGCTCGATCGTTATCTGTGTTCTCCACTCGTCGC 240
Query 241 CGTCACTTACTCTTCTCGATCGCTGCTTCTCATGACTCTTGGCTCCGTCGTAGCTCCTAT 300
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 241 CGTCACTTACTCTTCTCGATCGCCGCTTCTCACGACTCTTGGCTCCGTCGTAGCTCGTAC 300
Query 301 GTTCGTCTCTGGTACTCTCCTGAGTCTACACGCGCCGTCGTGTTTCTCGATCGCGGTGGA 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTCGTCTCTGGTACTCTCCTGAATCTACACGCGCCGTCGTGTTTCTCGATCGCGGTGGA 360
Query 361 TTGGAGTCCGATCCAACTCTCCCTCCTGTGATTGTATCTAAAGACGTTTCTAGGTTTCCT 420
||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 361 TTGGAGTCCGATCTAACTCTTCCTCCTGTGATTGTCTCTAAAGACGTTTCTAGGTTTCCT 420
Query 421 TATAACTTCCCTGGCGGTCTCCGATCAGCGATTCGTGTGGCTCGTGTTGTTAAAGAGACG 480
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 TATAATTTCCCTGGTGGTCTCCGATCGGCGATTCGTGTGGCTCGTGTTGTTAAAGAGACG 480
Query 481 GTGGATCTG-GGAGATAAAGATGTGCGGTGGTTCGTTTTCGGTGATGATGATACTGTGTT 539
|| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 481 GTTGAT-AGAGGAGATAAAGATGTGCGGTGGTTTGTTTTCGGTGATGATGATACTGTCTT 539
Query 540 CTTTGTAGATAATTTGGTGACGGTTTTGTCTAAGTATGATCACCGGAAGTGGTATTACGT 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 540 CTTTGTAGATAATTTGGTGACGGTTTTATCTAAGTATGATCACCGGAAGTGGTTTTACGT 599
Query 600 CGGAAGTAATTCGGAGTTTTATGATCAGAATGTTAGGTATTCTTTTGATATGGCGTTTGG 659
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 CGGAAGTAATTCGGAGTTTTATGATCAGAATGTTAGGTATTCGTTTGATATGGCGTTTGG 659
Query 660 TGGTGGAGGATTCGCCATTAGTGCTTCGCTTGCTAAGGTTCTAGCTAAGGTTTTGGATTC 719
|||||| ||||| || ||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 660 TGGTGGTGGATTTGCTATTAGTGCTTCGCTTGCGAAGGTTTTAGCTAAGGTTTTGGATTC 719
Query 720 TTGTTTGATGAGGTATTCACATATGTATGGAAGCGATTCTAGGATCTTCTCTTGCGTCGC 779
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 TTGTTTGATGAGGTATTCACATATGTATGGAAGTGATTCTAGGATCTTCTCTTGCGTCGC 779
Query 780 TGAGCTTGGTGTTACATTAACTCATGAACCTGGATTTCATCAGATTGATGTAAGAGGGAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 TGAGCTTGGTGTTACATTAACTCATGAACCTGGATTTCATCAGATTGATGTCAGAGGGAA 839
Query 840 CATATTTGGTCTGCTATGTGCGCATCCTTTATCTCCATTGGTATCCCTTCATCACTTGGA 899
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 840 CATATTTGGTCTGCTATGTGCGCACCCTTTATCTCCATTGGTATCTCTTCATCACTTGGA 899
Query 900 TGCAGTTGATCCGTTTTTTCCAAAAAGGAACCGGACGGAATCTGTGGCTCGTCTTATTGG 959
||||||||||||||||||||||||||||||| |||| ||||| ||||||| |||||| ||
Sbjct 900 TGCAGTTGATCCGTTTTTTCCAAAAAGGAACAGGACAGAATCCGTGGCTCATCTTATCGG 959
Query 960 AGCTGCAAGTTTTGATTCCGCAAGGATTTTGCAGCAGAGTGTGTGCTATGATTCTTTGAA 1019
|||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct 960 AGCTGCAAGTTTTGATTCCGGGAGGATTTTACAGCAGAGTGTTTGTTATGATTCTTTGAA 1019
Query 1020 CACAGTGACTGTTTCGGTTGTGTGGGGTTATGCGGTTCAAGTTTACGAAGGTAATAAACT 1079
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1020 CACAGTGACTGTTTCGGTTGTGTGGGGTTACGCGGTTCAAGTTTATGAAGGAAATAAACT 1079
Query 1080 TCTTCCGGATCTTCTCAC-CTTGCAAAAGACATTTTCTACATGGAGAAGAGGGTCAGGGG 1138
|||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||
Sbjct 1080 TCTTCCGGATCTTCTCACACT-GCAAAAGACATTTTCTACATGGAGGAGAGGGTCAGGGG 1138
Query 1139 TCCAAAGCAATTATATGTTCAGTACAAGAGAATATCCGAGGGATCCATGTGGGAGACCAC 1198
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1139 TCCAAAGCAACTATATGTTCAGTACAAGAGAATATCCGAGGGATCCATGTGGGAGACCGC 1198
Query 1199 TCGTCTTTTTCTTGGACAGTGTAGGATCAGATGGAACTGAGGGAACGTGGAGTAACTATA 1258
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1199 TCGTCTTTTTCTTGGACAGTGTAGGATCAGATGGAACTGAGGGAACATGGAGTAACTATA 1258
Query 1259 ACCTCCATAGAGTCGGAAATTGTCACAGAGCAGAAGCTGTTGAGCATCTAGAACGCGTCA 1318
|| |||||||||| ||| | ||||||||||||||||||||||||| |||||||||| |||
Sbjct 1259 ACATCCATAGAGTTGGACACTGTCACAGAGCAGAAGCTGTTGAGCGTCTAGAACGCATCA 1318
Query 1319 GAGTTCTGTCTCGC-AAGCTGAAACATGATGTTGAACAGATGG-TTGCGCCTCGCCGCCA 1376
|||||||||||| | || ||| ||| | ||||||||||||| || ||||||||||||
Sbjct 1319 GAGTTCTGTCTC-CTAAACTGGAACGCAACGTTGAACAGATGGGTTT-GCCTCGCCGCCA 1376
Query 1377 ATGTTGTGACATCTCATCGCCTTATAATAAATCAATGGTCATTAATATAAGGCAATGCAT 1436
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1377 ATGTTGTGACATCTCATCGCCATATAATAAGTCAATGGTCATTAATATAAGGCAATGCAT 1436
Query 1437 GACGGATGAGCTAATCGCGATGAACACTTAGCATATTTTCTTG-GCCATTCTCTTCAAGG 1495
| |||||||||||||||| ||||||||||||||| ||||| | | || ||||||| ||
Sbjct 1437 GCCGGATGAGCTAATCGCCATGAACACTTAGCAT-TTTTCCTCAGTCACTCTCTTCTAGA 1495
Query 1496 ATCAACTAAAAAAGGTCC-GTGCAAGCAAG-TCCTATGGTTCTTCTGCTCGAAAGAAATG 1553
|||| |||||||| ||| ||||||||||| || || |||||||||||||| ||||||||
Sbjct 1496 ATCAGCTAAAAAA--TCCCGTGCAAGCAAGGTC-TACGGTTCTTCTGCTCGGAAGAAATG 1552
Query 1554 GCGGAATCCGAGAGTTTAGACCATCTT-CGAAAAGTGTCTCATACAAGACCCGAGCTTAA 1612
|||||||||||| ||||||| || ||||||||||||||||||||||| |||| ||
Sbjct 1553 GCGGAATCCGAGGGTTTAGAGT-TCAGACGAAAAGTGTCTCATACAAGACCTGAGCACAA 1611
Query 1613 ATTTTGCATTTAA-ACCAAAGGTTGTTTCGtttttttttttGTAAATTGTGTAAGGAGAT 1671
|||||||||| | ||||||||||||||| | ||||| |||||||||||||||||||
Sbjct 1612 -TTTTGCATTTTACACCAAAGGTTGTTTC-TGTTTTT----GTAAATTGTGTAAGGAGAT 1665
Query 1672 GAAGAAAACACAGATCCTTCTTCTGTATAT--GGTTTGTCTCATTCTCTACCAAAGTTTT 1729
||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1666 GAAGAAAACTCAGATCCTTCTTCTGTATATATGGTC-GTCTCATTCTCTACCAAAGTTTT 1724
Query 1730 GAGTTTTTGGTTATT-TGAGAAAGT 1753
| |||||||||| || |||||||||
Sbjct 1725 GCGTTTTTGGTT-TTGTGAGAAAGT 1748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86696341215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5