BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493370
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15210.1 | Symbols: ATBETA-AMY, AT-BETA-AMY, RAM1, BMY1, BAM... 2706 0.0
> AT4G15210.1 | Symbols: ATBETA-AMY, AT-BETA-AMY, RAM1, BMY1, BAM5
| beta-amylase 5 | chr4:8666338-8669470 REVERSE LENGTH=2006
Length=2006
Score = 2706 bits (1465), Expect = 0.0
Identities = 1780/1925 (92%), Gaps = 50/1925 (3%)
Strand=Plus/Plus
Query 1 AGACATGTGAGCTTCAACTACTACTACTTATTGCTTATATTTTCCTACAACA----CT-- 54
|||||||||||||||| |||||||| | |||||||||||||||||||||||| ||
Sbjct 2 AGACATGTGAGCTTCATCTACTACT-CATATTGCTTATATTTTCCTACAACACTCTCTCA 60
Query 55 -C---aaaa-aaaaaaaaaCCA-GTTCTTTCTTTGTTTGTATTTAGAAG-AAAATGGCTG 107
| |||| ||||||||| | |||||||||||||||||||||||||| |||||||||
Sbjct 61 ACAAAAAAACAAAAAAAAAAGACGTTCTTTCTTTGTTTGTATTTAGAAGAAAAATGGCTA 120
Query 108 CCAATTACAACGAAAAGCTTCTTCTTAACTATGTTCCCGTTTACGTTATGCTTCCGCTGG 167
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 121 CCAATTACAACGAGAAGCTTCTTCTTAATTATGTTCCCGTTTACGTTATGCTTCCGTTGG 180
Query 168 GAGTTGTGAATGTGGAAAACGTATTTGCGGACCCAGAAACGCTTGAAACGCAGCTCAAGC 227
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 181 GAGTTGTGAATGTGGAAAATGTATTTGCGGACCCAGAAACGCTTGAAACGCAGCTTAAAC 240
Query 228 GTCTCAAAGAAGAAGCTGGCGTCGACGGCGTGATGGTCGATGTTTGGTGGGGAATCATAG 287
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 241 GTCTCAAAGAAGAAGCTGGCGTTGATGGCGTTATGGTCGATGTTTGGTGGGGAATCATAG 300
Query 288 AATCCAAAGGTCCCAAACAATACGATTGGACCGCCTACAAAACGCTATTCCAGTTAATCG 347
|||||||||||||||||||||| |||||||| |||||||||||||| |||||| | ||||
Sbjct 301 AATCCAAAGGTCCCAAACAATATGATTGGACGGCCTACAAAACGCTGTTCCAGCTGATCG 360
Query 348 CGCGTTTAGGACTCAAAATCCAAGCAATCATGTCTTTTCACCAATGTGGCGGGAACGTCG 407
| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 361 CACGTTTGGGACTCAAAATCCAAGCAATCATGTCTTTTCACCAATGTGGTGGAAACGTTG 420
Query 408 GCGACATCGTTACTATCCCGATCCCACAATGGGTGCGCGATGTCGGCGACAACGATCCCG 467
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 421 GCGACATCGTTACTATCCCGATCCCACAATGGGTTCGCGATGTCGGTGACAATGATCCCG 480
Query 468 ATATCTACTACACTAACCGTAAAGGAACTAGAGACATCGAGTATCTCTCCATCGGTGTTG 527
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 ATATCTACTACACTAACCGTAAAGGAACTAGAGACATCGAGTATCTCTCAATCGGTGTTG 540
Query 528 ATAACCTTCCCCTCTTCGCCGGAAGAACCGCGGTTCAGATATACAGTGATTACATGAGTA 587
|||| |||||||| || |||||||||||||| |||||| | |||||||||||||||||||
Sbjct 541 ATAATCTTCCCCTATTTGCCGGAAGAACCGCTGTTCAGTTGTACAGTGATTACATGAGTA 600
Query 588 GCTTCAAAGAAAACATGACGGATTTGATAGAAGCCGGCGCGATTGTTGACATTGAAGTCG 647
||||||||||||||||| |||||||||||||||| || | |||||||||||| |||||||
Sbjct 601 GCTTCAAAGAAAACATGGCGGATTTGATAGAAGCTGGGGTGATTGTTGACATCGAAGTCG 660
Query 648 GACTTGGTCCC-GCCGGTGAACTTCGTTATCCTTCTTACCCCCAAAGCCAAGGTTGGGTA 706
||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 GACTTGG-CCCGGCCGGTGAACTACGTTATCCTTCTTACCCCCAAAGCCAAGGTTGGGTG 719
Query 707 TTTCCCGGCATCGGAGAATTCCAGTGTTATGACAAGTACTTGAAGAAAGATTTCAAGGAA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTCCCGGCATCGGAGAATTCCAGTGTTATGACAAGTACTTGAAGAAAGATTTCAAGGAA 779
Query 767 GCGGCGGCGAAAGCAGGGCACCCTGAGTGGGATTTGCCGGAGGACGCCGGAGAATACAAT 826
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 780 GCGGCGGCGAAAGCAGGGCACCCTGAGTGGGACTTGCCAGAGGACGCCGGAGAATACAAT 839
Query 827 GACAAGCCGGAGGAGACTGGATTTTTCAAGA-GAAATGGGACTTATGTCTCGGAGGAGGG 885
||||||||||||||||||||||||||||||| | | ||||||||||||||||||| ||||
Sbjct 840 GACAAGCCGGAGGAGACTGGATTTTTCAAGAAGGA-TGGGACTTATGTCTCGGAGAAGGG 898
Query 886 GAAGTTTTTCTTGACATGGTACTCGAACAAACTCATCTTTCATGGAGATCAGATCATAGG 945
|||||||||| |||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 899 GAAGTTTTTCATGACATGGTACTCGAACAAACTAATTTTTCATGGAGATCAGATCTTAGG 958
Query 946 AGAAGCCAACAAGATCTTTGCTGGACTTAAAGTTAACTTGGCTGCCAAGGTTTCGGGGAT 1005
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 959 AGAAGCCAACAAGATCTTTGCTGGACTTAAAGTTAACTTGGCTGCCAAGGTTTCTGGGAT 1018
Query 1006 TCACTGGTTGTACAACCACCACAGCCACGCGGCGGAGCTGACTGCTGGATATTATAACCT 1065
|||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||
Sbjct 1019 TCACTGGTTGTACAACCACCACAGCCACGCTGCGGAGTTGACTGCTGGATATTACAACCT 1078
Query 1066 CTTCAAGAGAGATGGTTACCGTCCTATCGCTCGGATGCTCTCAAAACACTACGGCATTCT 1125
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1079 TTTCAAGAGAGATGGTTACCGTCCGATCGCCCGGATGCTCTCAAAACACTACGGCATTCT 1138
Query 1126 CAACTTCACTTGCCTTGAGATGAAAGATACCGACAATACCGCTGAAGCCCTAAGTGCTCC 1185
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1139 CAACTTCACTTGCCTTGAGATGAAAGATACCGACAATACAGCTGAAGCCCTAAGTGCTCC 1198
Query 1186 CCAAGAACTTGTTCAAGTGGTACTGAGCAAGGCATGGAAAGAAGGTATAGAAGTTGCGGG 1245
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TCAAGAACTTGTTCAAGAGGTACTGAGCAAGGCATGGAAAGAAGGTATAGAAGTTGCGGG 1258
Query 1246 TGAGAATGCATTAGAGACCTATGGAGCCAAAGGTTACAATCAAATTCTTCTTAACGCGAG 1305
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1259 TGAGAACGCATTAGAGACCTATGGAGCCAAAGGTTACAATCAGATTCTTCTTAACGCGAG 1318
Query 1306 GCCTAACGGGGTTAACCCGAATGGTAAACCGAAGCTTAGAATGTACGGATTTACTTACCT 1365
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1319 GCCTAACGGGGTTAACCCAAACGGTAAGCCGAAGCTTAGAATGTACGGATTTACTTACCT 1378
Query 1366 TCGGTTATCTGATACGGTCTTTCAAGAAGACAACTTTAAGCTGTTCAAGAAGTTGGTGAG 1425
||||||||| ||||| |||||||||||| |||||||| ||||||| ||||||||||||||
Sbjct 1379 TCGGTTATCCGATACTGTCTTTCAAGAAAACAACTTTGAGCTGTTTAAGAAGTTGGTGAG 1438
Query 1426 GAAAATGCATGCTGATCAAGATAATTACTGTGGAGACGCAGCGAAGTACGGGCATGAGAT 1485
||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1439 GAAAATGCACGCTGATCAAGATTATT---GTGGAGACGCAGCGAAGTACGGGCATGAGAT 1495
Query 1486 TGTGCCGCTGAAAACGCCGAATTCGCAGCTGACGGTGGAGGATATCGCCGACGCGGCTCA 1545
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1496 TGTGCCGTTGAAAACGTCGAATTCGCAGCTGACGCTGGAGGATATCGCCGACGCGGCTCA 1555
Query 1546 GCCAAGTGGAGCATTTAAGTGGGACTCTGAAACCGACATGAAGGTCGACGGTT-GATTAT 1604
|||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||
Sbjct 1556 GCCAAGTGGAGCATTTAAGTGGGACTCTGAAACCGATTTGAAGGTCGACGGTTAG-TTAT 1614
Query 1605 ATTT-ATATGATTGATCGTCTAATCACaaagaaagtaagagaaggaaac--gt--g-a-g 1657
|||| ||||||| |||||||||||||||||||||||||| ||| ||| | | | | |
Sbjct 1615 ATTTTATATGATCGATCGTCTAATCACAAAGAAAGTAAGGGAAAGAATCAAGGAAGTAAG 1674
Query 1658 aataagaagagaataaataaagagaataagaagagGTATTTACAACTTTAAGGGGTTAAA 1717
|||||||||| ||||||||||||||||||||||||| |||| |||||||||| |||||||
Sbjct 1675 AATAAGAAGATAATAAATAAAGAGAATAAGAAGAGGCATTTGCAACTTTAAGAGGTTAAA 1734
Query 1718 ATTTCGTAAATGT-T-TG-GTT--GT-GTGT-TTT-GGGT-TACCAGAAGAAATAAAACG 1768
||||| |||||| | || ||| || |||| ||| |||| ||||| |||||||||||||
Sbjct 1735 ATTTCTTAAATGAGTCTGAGTTTCGTTGTGTGTTTTGGGTGTACCATAAGAAATAAAACG 1794
Query 1769 T--GT--TTGCTATGTATTTTGTGAAGTGTGTATTTCTGGTTGAATTATG-G-CTGTGTA 1822
| | ||||||||||||||||||||||||||||||||||||||| || | ||| |||
Sbjct 1795 TACGGGGTTGCTATGTATTTTGTGAAGTGTGTATTTCTGGTTGAAT-ATTAGTCTGCGTA 1853
Query 1823 ATaaaaaaaaGT-TGTTTGTGTaaaaaaaTAAATAAGTGTTGTCAGTAAAATAATGCATC 1881
|||||||||||| ||| | ||||||| ||||||| ||||| |||||||||||||||||
Sbjct 1854 ATAAAAAAAAGTATGTGTA-GTAAAAA--TAAATAACTGTTGCCAGTAAAATAATGCATC 1910
Query 1882 ATTGT 1886
|||||
Sbjct 1911 ATTGT 1915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93373013700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5