BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493374
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15160.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 686 0.0
AT4G15165.1 | Symbols: | N-terminal nucleophile aminohydrolase... 364 9e-100
AT3G22110.1 | Symbols: PAC1 | 20S proteasome alpha subunit C1 |... 159 5e-38
> AT4G15160.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:8646150-8647252
FORWARD LENGTH=1103
Length=1103
Score = 686 bits (371), Expect = 0.0
Identities = 518/586 (88%), Gaps = 21/586 (4%)
Strand=Plus/Plus
Query 181 CCAAAACCTCCCACCGTGAAG---CCTCCACCTCCATAC---ATTCCATGC-CCTCCTCC 233
||||||||||| ||||||||| || |||||||| ||| | ||| | || |||||
Sbjct 286 CCAAAACCTCCAACCGTGAAGCCACCACCACCTCCCTACGTGAAGCCA-CCACCACCTCC 344
Query 234 C-CCGT--ATTCTCCAAAACCTCc-cacggtgaagccaccaccaccaccaaccgtgaagc 289
| | || | | ||| |||||| || ||||||||||||||||| || ||||||||||
Sbjct 345 CACTGTGAAGCCACCACCACCTCCTTAC-GTGAAGCCACCACCACCCCCTACCGTGAAGC 403
Query 290 caccaccacctcccaccg-tgaagccaccaccaccacccacgccgtatactccaccacca 348
|||||||||| |||| || | | | |||||||||||||||||||||||||| ||||||
Sbjct 404 CACCACCACCACCCA-CGCCGTATACTCCACCACCACCCACGCCGTATACTCCTCCACCA 462
Query 349 cccaccgtgaagccaccaccaccaccaccagtcgttaccccgccaccgccaacaccaacc 408
||||| |||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 463 CCCACGGTGAAG---CCACCACCACCACCGGTCGTTACCCCACCACCGCCAACACCAACC 519
Query 409 ccaGAGGCGCCATGCCCGCCACCTCCACCAACCCCATATCCTCCTCCGCCTAAACCAGAG 468
|||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 520 CCAGAGGCGCCATGTCCGCCACCACCACCAACACCATATCCTCCTCCGCCTAAACCGGAA 579
Query 469 ACTTGTCCCATCGACGCTCTGAAACTAGGCGCGTGTGTGGACGTCCTAGGCGGTTTGATT 528
|||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 580 ACTTGTCCAATCGACGCACTGAAACTAGGCGCATGTGTGGACGTGCTAGGCGGTTTGATT 639
Query 529 CACATCGGACTAGGGAAAAGCTACGCTAAGGCTAAGTGTTGCCCACTTCTTGAGGGTTTA 588
|||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 640 CACATCGGACTAGGGAAAAGCTACGCTAAGGCAAAGTGTTGCCCACTTCTTGACGACTTA 699
Query 589 GTGGGTGTTGACGCTGCGGTTTGTCTCTGCACCACCATTAGAGCGAAGCTTCTCAACATT 648
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GTGGGTCTTGACGCGGCGGTTTGTCTCTGCACCACCATTAGAGCGAAGCTTCTCAACATT 759
Query 649 GACCTCATTATTCCAATTGCTCTTGAGCTTCTTGTCGACTGTGGTAAGACTCC---ACCT 705
||||||||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||
Sbjct 760 GACCTCATTATCCCAATTGCTCTAGAGGTTCTTGTCGACTGTGGTAAGACTCCTCCACCT 819
Query 706 CGTGGCTTCAAGTGTCCTGCTCCGCTCAAAAGGACTCCTTTCTTGG 751
|||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct 820 CGTGGCTTCAAGTGTCCTACTCCGCTAAAAAGGACTCCTCTCTTGG 865
Score = 525 bits (284), Expect = 4e-148
Identities = 348/378 (92%), Gaps = 8/378 (2%)
Strand=Plus/Plus
Query 1 ATGGGGCTTCTTCACAAGCAAAACCTCTCCTTTGTGATACTACTCCTCCTCGGTCTCCTC 60
|||| ||||||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 43 ATGGCGCTTCTTCACAAGCAAAACATTTCCTTTGTGATACTCCTCCTCCTCGGTCTCCTT 102
Query 61 GCCGTCTCTTATGCTTGTGATTGTAGTGACCCTCCTAAACCATCTCCACACCCTGTTAAA 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 103 GCCGTCTCTTATGCTTGTGATTGTAGTGACCCTCCTAAACCATCACCACACCCTGTTAAA 162
Query 121 CCGCCAAAACATCCCGCTAAACCACCTAAGCCCCCCACCGTTAAACCACCTACTCACACC 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 163 CCGCCAAAACATCCCGCTAAACCACCTAAGCCCCCTACCGTTAAACCACCTACTCACACC 222
Query 181 CCAAAACCTCCCACCGTGAAGCCTCCACCTCCATACATTCCATGCCCTCCTCC-CCCGTA 239
||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 223 CCAAAGCCTCCCACTGTGAAGCCTCCACCTCCATACATTCCATGCCCTCCTCCGCCC-TA 281
Query 240 TTCTCCAAAACCTCccacggtgaagccaccaccaccacca-accgtgaagccaccaccac 298
| ||||||||||||| || ||||||||||||||||| || || ||||||||||||||||
Sbjct 282 TACTCCAAAACCTCCAACCGTGAAGCCACCACCACCTCCCTAC-GTGAAGCCACCACCAC 340
Query 299 ctcccaccgtgaagccaccaccaccaccc-acgccgtatactccaccaccaccc-accgt 356
||||||| ||||||||||||||||| || ||| | | | |||||||| ||| |||||
Sbjct 341 CTCCCACTGTGAAGCCACCACCACCTCCTTACGT-GAAGCCACCACCACC-CCCTACCGT 398
Query 357 gaagccaccaccaccacc 374
||||||||||||||||||
Sbjct 399 GAAGCCACCACCACCACC 416
> AT4G15165.1 | Symbols: | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr4:8648832-8650382
FORWARD LENGTH=908
Length=908
Score = 364 bits (197), Expect = 9e-100
Identities = 219/230 (95%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 1124 GCTGGGACAAGAACCACGGGTTTCAGCTGTATATGAGTGACCCAAGCGGAAACTATGGTG 1183
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 398 GCTGGGACAGGAACCACGGGTTTCAGCTGTATATGAGTGACCCAAGTGGAAACTATGGTG 457
Query 1184 GATGGAAAGCTGCAGCCGTTGGAGCAAATAATCAAGCGGCTCAGTCTATTCTTAAGCAAG 1243
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 GATGGCAAGCTGCAGCTGTTGGAGCAAATAATCAAGCGGCTCAGTCTATTCTTAAGCAAG 517
Query 1244 ACTATAAGGATGATGCAACAAGAGAAGAGGTGGTTCAGCTCGCTATCAAGGTTTTGAGCA 1303
||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 518 ACTATAAGGATGATGCAACGAGGGAAGAAGTGGTTCAGCTCGCTATCAAGGTTTTGAGCA 577
Query 1304 AGACAATGGACAGCACGAGCTTGACAGCTGAGAAGCTCGAGCTTGCGGAG 1353
|||| |||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 578 AGACGATGGACAGCACGAGCTTGACAGCTGAAAAACTCGAGCTTGCTGAG 627
Score = 222 bits (120), Expect = 6e-57
Identities = 145/157 (92%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 969 AGCTATTGGCAATGCTGGTTCTGCGATTGGAATCTTGGCAAAAGATGGAGTTGTGTTGGT 1028
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 189 AGCTATTGGCAATGCTGGTTCTGCCATTGGAATCTTGGCAAAAGACGGAGTGGTGTTGGT 248
Query 1029 TGGTGAGAAGAAAGTCACTTCTAAGCTACTTCAAACCTCTATG-TCCACGGAGAAAATGT 1087
|||||||||||||||||||||||| || |||||||||||| | |||| |||||||||||
Sbjct 249 TGGTGAGAAGAAAGTCACTTCTAAACTTCTTCAAACCTCT-TCATCCATGGAGAAAATGT 307
Query 1088 ACAAGATTGATGACCATGTGGCTTGTGCTGTGGCTGG 1124
||||||| |||||||||||||||||||| || |||||
Sbjct 308 ACAAGATCGATGACCATGTGGCTTGTGCAGTTGCTGG 344
Score = 106 bits (57), Expect = 6e-22
Identities = 65/69 (94%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 751 GCACCAAGTTCTCAGCGAAATCAAGGAATCGAAAACTCAGAAGAGAACTCAGAGAAGAAA 810
|||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| |||
Sbjct 33 GCACCAAGTTCTCAGCGAAATCAAGGAATCGAAAACCCAGAAGAGGACTCAGTGAACAAA 92
Query 811 TTTCTTCAG 819
|||||||||
Sbjct 93 TTTCTTCAG 101
> AT3G22110.1 | Symbols: PAC1 | 20S proteasome alpha subunit C1
| chr3:7792638-7794165 REVERSE LENGTH=1039
Length=1039
Score = 159 bits (86), Expect = 5e-38
Identities = 135/159 (85%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 967 GGA-GCTATTGGCAATGCTGGTTCTGCGATTGGAATCTTGGCAAAAGATGGAGTTGTGTT 1025
||| || ||||| || || |||||||||||||||||||| | ||||| || ||||||||
Sbjct 180 GGAGGCCATTGGAAACGCCGGTTCTGCGATTGGAATCTTATCCAAAGACGGTGTTGTGTT 239
Query 1026 GGTTGGTGAGAAGAAAGTCACTTCTAAGCTACTTCAAACCTCTATGTCCACGGAGAAAAT 1085
| | ||||||||||||||||| || ||||| ||||||||||| | || | ||||||||
Sbjct 240 GATCGGTGAGAAGAAAGTCACCTCAAAGCTTCTTCAAACCTCAACCTCTGCTGAGAAAAT 299
Query 1086 GTACAAGATTGATGACCATGTGGCTTGTGCTGTGGCTGG 1124
||||||||||||||||||||| || |||||||| |||||
Sbjct 300 GTACAAGATTGATGACCATGTTGCCTGTGCTGTTGCTGG 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66616123215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5