BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493376
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15120.1 | Symbols: | VQ motif-containing protein | chr4:86... 891 0.0
> AT4G15120.1 | Symbols: | VQ motif-containing protein | chr4:8634725-8635561
FORWARD LENGTH=837
Length=837
Score = 891 bits (482), Expect = 0.0
Identities = 721/826 (87%), Gaps = 58/826 (7%)
Strand=Plus/Plus
Query 1 ATAAATACTGAACAAGGGCTCCTCTTTGATATATCGC---ATAAT---AAGAAGATGGCC 54
||||||||| |||||||||||||||||||| | || | ||||| ||||||||||||
Sbjct 1 ATAAATACTAAACAAGGGCTCCTCTTTGATCTCTCCCATAATAATAAGAAGAAGATGGCC 60
Query 55 AACTCTAACAACGACTGGTCTCAGTTCTAcaacaaccaaaccttcttcaccaccgcaacc 114
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 AACTCTAACAACGACTGGTCTCAATTCTACAACAACCAAACCTTCTTCACCACCGCAACC 120
Query 115 tccaccgtcacaaccaccaccaccacc---acGTCAGCTGATTCTCCTCTGAATCCGGA- 170
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 121 TCCACCGTCACAACCACCACCACCACCGCCACGTCAGCTGATTCTCCTCTGAGTCCGGAT 180
Query 171 AAGTCGCCGTGTTACAAAGCCAACACGTCGGAGGTCTAGAGCGTCTCGTCGTACACCTAC 230
|| |||||||||| ||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 181 AA-TCGCCGTGTTGCAAAGCCAACACGTCGGAGATCTAGAGCCTCACGTCGTACACCTAC 239
Query 231 TACACTTTTCAACACCGACACAGCCAACTTCAGAGCCATGGTGCAACAATTCACCGGCGG 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TACACTTTTCAACACCGACACAGCCAACTTCAGAGCCATGGTGCAACAATTCACCGGCGG 299
Query 291 TCCATCTGCTGTGGCTTTCGGGTCTTCGTCGTCGTCTGGTTTTAGTCTCACCTCGTCCGA 350
|||||| || || || |||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 300 TCCATCCGCCGTTGCGTTCGGGTCTTCGCCGTCGTCTGGTTTTAGTCTCACCTCGTCTGA 359
Query 351 -CCTCACTGCCGGAGCT-TCTTCCTCTCCTTGGCAATACGCTAATTTGCAGAACCATACG 408
|| ||||||||||| | |||||||||||||||||||||||||||||||||||||| | |
Sbjct 360 TCC-CACTGCCGGAG-TATCTTCCTCTCCTTGGCAATACGCTAATTTGCAGAACCAAATG 417
Query 409 TCTCATCATCACGAGCTGCCGCAACAAGATAGACCGTACTTGTTCTCGTCGTCAAACCAC 468
||||| | ||||||| ||||||| | |||||||| |||| |||||||||||| ||
Sbjct 418 GCTCAT-A--ACGAGCTAATGCAACAACAGCGACCGTACATGTTTTCGTCGTCAAACAAC 474
Query 469 GTGAGTACTCTTGGCTATCCTAACGCGGTGGTTTCCAATGGTTTTGTAGCGGCGGATGAG 528
||||| |||||| ||||||||||||| |||| | || |||||||||| | |||||| |||
Sbjct 475 GTGAGCACTCTTAGCTATCCTAACGCAGTGGCTACCGATGGTTTTGTGGGGGCGGAGGAG 534
Query 529 AGTAGAGACGGTGG---AGGAGGAGGAGG---TTATGCTCCGTCTTCGGAGACAAATAGC 582
|||||||| ||||| |||||||||||| |||||||||||| ||||||| ||||||
Sbjct 535 AGTAGAGAGGGTGGTGGAGGAGGAGGAGGAGGTTATGCTCCGTCGTCGGAGAGGAATAGC 594
Query 583 AATA-T---TA----GA--AAT----G-t-t-tt-tt-tt-----t-t-CTTT--CTAAT 614
|||| | || || || | | | || || || | | |||| ||| |
Sbjct 595 AATACTACCTATTCCGAGGAAAAAACGGTATATTATTCTTAGAAATGTTCTTTTTCTAGT 654
Query 615 TTTT-ACCTATTTCGAGGaaaaaaaaaCATAAAGGAAGAAATGTTAGGTATACTGACTTT 673
|||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 655 TTTTTACCTATTCCGAGGAAAAAAAA-CATAAAGGAAGAAATGTTAGGTATACTGACTTT 713
Query 674 GTTTGTAGCAGAATGAAAACTTTGACTATTGTAATTTTCTTTAGTTATGTTTATTTATTT 733
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 714 GTTTGTAGCAGAATGAAAACTTTGACTATTGTAATTTTCTTTAGTT--GTTTATTG-TTT 770
Query 734 TTCATATTTTGAGGACTTTGTGGACGCATAAATTGAATAAACTTAA 779
|||||||||||||||||| ||||||| ||||||| |||||||||||
Sbjct 771 TTCATATTTTGAGGACTT-GTGGACGGATAAATTAAATAAACTTAA 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37876546838
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5