BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493378
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15093.1 | Symbols: | catalytic LigB subunit of aromatic ri... 1402 0.0
> AT4G15093.1 | Symbols: | catalytic LigB subunit of aromatic
ring-opening dioxygenase family | chr4:8618343-8619646 FORWARD
LENGTH=1095
Length=1095
Score = 1402 bits (759), Expect = 0.0
Identities = 921/994 (93%), Gaps = 31/994 (3%)
Strand=Plus/Plus
Query 76 TTTCAATGGAGAAAGTGAATCAAACCTTCTTCTTATCTCATGGATCTCCAACTTTAAGCA 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 107 TTTCAATGGAGAAAGTGAATCAAACCTTCTTCTTATCTCATGGATCTCCAACTTTGAGCA 166
Query 136 TAGACGATACCTTAGAAGCAAGACAATTCTTCAAATCATGGACTCACAAAGTTCTTCCTC 195
|||| ||| |||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 167 TAGATGATTCCTTGGAAGCGAGACAATTCTTCAAATCATGGACTCAAAAAGTTCTTCCTC 226
Query 196 AAAAACCCAAATCGATCTTAGTCATCTCTGCTCATTGGGACACCAAATTCCCATCCGTCA 255
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 227 AAAAACCCAAATCGATTTTAGTCATCTCTGCTCATTGGGACACCAAATTCCCATCTGTCA 286
Query 256 ACACTGTTCTTCGCAATAACACGATCCACGATTTCTATGGCTTCCCTGATCCTATGTACA 315
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 287 ACACTGTTCTTCGCAATAACACGATCCACGATTTCTCTGGCTTCCCTGATCCTATGTACA 346
Query 316 AGTTGAAATATGAAGCACCAGGAGCTATTGAATTAGGGAAGAGGGTTAAAGAGTTGTTAA 375
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 347 AGTTGAAATATGAAGCACCAGGAGCAATTGAATTAGGGAAAAGGGTTAAAGAGTTGTTAA 406
Query 376 TGAAAGAAGGAGGAATGAAACGTGTTGATGAAGATACAAAGAGAGGACTTGATCATGGTG 435
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 407 TGAAAGAAGGAGGAATGAAACGTGTTGATGAAGATACAAAGAGAGGACTTGATCATGGAG 466
Query 436 CTTGGGTTCCTCTTATGTTGATGTATCCAGAAGCCGATATACCGATTTGTCAACTCTCTG 495
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 467 CTTGGGTTCCTCTTATGTTGATGTATCCAGAAGCTGATATACCCATTTGTCAACTCTCTG 526
Query 496 TTCAATCAAATCAAAATGGGAGTTATCATTATAATATGGGTAAAGCATTGGCTTCATTGA 555
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 527 TTCAATCAAATCAAAATGGGAGTTATCATTACAACATGGGTAAAGCATTGGCTTCATTGA 586
Query 556 AAGATGAAGGTGTTCTTATCATTGGCTCTGGAAGTGCTACTCATAACTTGAGGAAGCTTG 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 AAGATGAAGGTGTTCTTATCATTGGCTCTGGAAGTGCTACTCATAACTTGAGGAAGCTTG 646
Query 616 A-TTTCAATATCACTAATGGCTCATCGGTTCCTTGGGCTTTGGAGTTTGAT-ATTTGGCT 673
| ||| ||||||||| |||||||| | ||||||||||| |||||||||||| ||| ||||
Sbjct 647 ACTTT-AATATCACTGATGGCTCACCCGTTCCTTGGGCCTTGGAGTTTGATCATT-GGCT 704
Query 674 TAGAGATTCTCTACTTCAAGGAAGGTATGGAGATGTGAATGAGTGGGAAGAGAGAGCTCC 733
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 705 TAGAGATTCTCTACTTCAAGGAAGGTATGGAGATGTGAATGAGTGGGAAGAGAAAGCTCC 764
Query 734 GAATGCGAAAGTGGCGCATCCGTTGCCCGAGCATTTGTACCCGTTACACGTCGCGATGGG 793
|||||||||| |||||||||||| ||||||||||||||| |||||||| || | ||||||
Sbjct 765 GAATGCGAAAATGGCGCATCCGTGGCCCGAGCATTTGTATCCGTTACATGTTGTGATGGG 824
Query 794 TGCAGCTGGTGAAGATGCAAAGGCAGAGCAAATCCATACAAGTTGGCAACTTGGTACCTT 853
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TGCAGCAGGTGGAGATGCAAAGGCAGAGCAAATCCATACAAGTTGGCAACTTGGTACCTT 884
Query 854 GTCTTATTCTTCTTATAGCTTCACTTCTTCCCCTTAGAAGAACATTTTAAACTTTATCTC 913
|||||||||||||||||||||||||||||| | || ||| | ||||| || ||| |||||
Sbjct 885 GTCTTATTCTTCTTATAGCTTCACTTCTTCTCTTT-GAA-A-CATTTCAATCTTCATCTC 941
Query 914 CT-TCACTTGTCTTTGACTAAGCTTTTGTGTGT-T-T----A---------A-T-AAT-- 953
|| | |||||||||||| ||||||||||||||| | | | | | |||
Sbjct 942 CTAT-ACTTGTCTTTGATTAAGCTTTTGTGTGTGTGTGTTCATGTCTCTTTAATTAATAA 1000
Query 954 -CCAAAACTTGTATTGTATACAAATACAAATCCTCTATGTTCTATAATGTATGAATATGT 1012
||||| | ||| |||||||| |||||||||||||||||| ||||||| ||||||| ||
Sbjct 1001 TCCAAATCCTGTCTTGTATACGAATACAAATCCTCTATGTACTATAATATATGAAT--GT 1058
Query 1013 CATGTGAATTTCAATAAATTGTGTTCTTTGTAAT 1046
||||||||||||||||||||||||| ||||||||
Sbjct 1059 CATGTGAATTTCAATAAATTGTGTTGTTTGTAAT 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51289064087
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5