BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493378 Length=1046 Score E Sequences producing significant alignments: (Bits) Value AT4G15093.1 | Symbols: | catalytic LigB subunit of aromatic ri... 1402 0.0 > AT4G15093.1 | Symbols: | catalytic LigB subunit of aromatic ring-opening dioxygenase family | chr4:8618343-8619646 FORWARD LENGTH=1095 Length=1095 Score = 1402 bits (759), Expect = 0.0 Identities = 921/994 (93%), Gaps = 31/994 (3%) Strand=Plus/Plus Query 76 TTTCAATGGAGAAAGTGAATCAAACCTTCTTCTTATCTCATGGATCTCCAACTTTAAGCA 135 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 107 TTTCAATGGAGAAAGTGAATCAAACCTTCTTCTTATCTCATGGATCTCCAACTTTGAGCA 166 Query 136 TAGACGATACCTTAGAAGCAAGACAATTCTTCAAATCATGGACTCACAAAGTTCTTCCTC 195 |||| ||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 167 TAGATGATTCCTTGGAAGCGAGACAATTCTTCAAATCATGGACTCAAAAAGTTCTTCCTC 226 Query 196 AAAAACCCAAATCGATCTTAGTCATCTCTGCTCATTGGGACACCAAATTCCCATCCGTCA 255 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 227 AAAAACCCAAATCGATTTTAGTCATCTCTGCTCATTGGGACACCAAATTCCCATCTGTCA 286 Query 256 ACACTGTTCTTCGCAATAACACGATCCACGATTTCTATGGCTTCCCTGATCCTATGTACA 315 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 287 ACACTGTTCTTCGCAATAACACGATCCACGATTTCTCTGGCTTCCCTGATCCTATGTACA 346 Query 316 AGTTGAAATATGAAGCACCAGGAGCTATTGAATTAGGGAAGAGGGTTAAAGAGTTGTTAA 375 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 347 AGTTGAAATATGAAGCACCAGGAGCAATTGAATTAGGGAAAAGGGTTAAAGAGTTGTTAA 406 Query 376 TGAAAGAAGGAGGAATGAAACGTGTTGATGAAGATACAAAGAGAGGACTTGATCATGGTG 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 407 TGAAAGAAGGAGGAATGAAACGTGTTGATGAAGATACAAAGAGAGGACTTGATCATGGAG 466 Query 436 CTTGGGTTCCTCTTATGTTGATGTATCCAGAAGCCGATATACCGATTTGTCAACTCTCTG 495 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 467 CTTGGGTTCCTCTTATGTTGATGTATCCAGAAGCTGATATACCCATTTGTCAACTCTCTG 526 Query 496 TTCAATCAAATCAAAATGGGAGTTATCATTATAATATGGGTAAAGCATTGGCTTCATTGA 555 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 527 TTCAATCAAATCAAAATGGGAGTTATCATTACAACATGGGTAAAGCATTGGCTTCATTGA 586 Query 556 AAGATGAAGGTGTTCTTATCATTGGCTCTGGAAGTGCTACTCATAACTTGAGGAAGCTTG 615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 587 AAGATGAAGGTGTTCTTATCATTGGCTCTGGAAGTGCTACTCATAACTTGAGGAAGCTTG 646 Query 616 A-TTTCAATATCACTAATGGCTCATCGGTTCCTTGGGCTTTGGAGTTTGAT-ATTTGGCT 673 | ||| ||||||||| |||||||| | ||||||||||| |||||||||||| ||| |||| Sbjct 647 ACTTT-AATATCACTGATGGCTCACCCGTTCCTTGGGCCTTGGAGTTTGATCATT-GGCT 704 Query 674 TAGAGATTCTCTACTTCAAGGAAGGTATGGAGATGTGAATGAGTGGGAAGAGAGAGCTCC 733 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 705 TAGAGATTCTCTACTTCAAGGAAGGTATGGAGATGTGAATGAGTGGGAAGAGAAAGCTCC 764 Query 734 GAATGCGAAAGTGGCGCATCCGTTGCCCGAGCATTTGTACCCGTTACACGTCGCGATGGG 793 |||||||||| |||||||||||| ||||||||||||||| |||||||| || | |||||| Sbjct 765 GAATGCGAAAATGGCGCATCCGTGGCCCGAGCATTTGTATCCGTTACATGTTGTGATGGG 824 Query 794 TGCAGCTGGTGAAGATGCAAAGGCAGAGCAAATCCATACAAGTTGGCAACTTGGTACCTT 853 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 825 TGCAGCAGGTGGAGATGCAAAGGCAGAGCAAATCCATACAAGTTGGCAACTTGGTACCTT 884 Query 854 GTCTTATTCTTCTTATAGCTTCACTTCTTCCCCTTAGAAGAACATTTTAAACTTTATCTC 913 |||||||||||||||||||||||||||||| | || ||| | ||||| || ||| ||||| Sbjct 885 GTCTTATTCTTCTTATAGCTTCACTTCTTCTCTTT-GAA-A-CATTTCAATCTTCATCTC 941 Query 914 CT-TCACTTGTCTTTGACTAAGCTTTTGTGTGT-T-T----A---------A-T-AAT-- 953 || | |||||||||||| ||||||||||||||| | | | | | ||| Sbjct 942 CTAT-ACTTGTCTTTGATTAAGCTTTTGTGTGTGTGTGTTCATGTCTCTTTAATTAATAA 1000 Query 954 -CCAAAACTTGTATTGTATACAAATACAAATCCTCTATGTTCTATAATGTATGAATATGT 1012 ||||| | ||| |||||||| |||||||||||||||||| ||||||| ||||||| || Sbjct 1001 TCCAAATCCTGTCTTGTATACGAATACAAATCCTCTATGTACTATAATATATGAAT--GT 1058 Query 1013 CATGTGAATTTCAATAAATTGTGTTCTTTGTAAT 1046 ||||||||||||||||||||||||| |||||||| Sbjct 1059 CATGTGAATTTCAATAAATTGTGTTGTTTGTAAT 1092 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51289064087 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5