BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493381

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15075.1 | Symbols:  | FBD-like domain family protein | chr4...   726    0.0  
  AT4G15060.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: FBD (Inte...   167    1e-40


> AT4G15075.1 | Symbols:  | FBD-like domain family protein | chr4:8607777-8608519 
FORWARD LENGTH=543
Length=543

 Score =  726 bits (393),  Expect = 0.0
 Identities = 500/548 (91%), Gaps = 21/548 (4%)
 Strand=Plus/Plus

Query  1    GATAGCTACTCCTATGATTTTCAAGATATGTCTAAGTTAGAGGTGGCGGATATCGAAACG  60
            |||||||||||||| |||||| |||||||| ||||||||| || ||||||||||||||||
Sbjct  10   GATAGCTACTCCTACGATTTTAAAGATATGCCTAAGTTAGGGGAGGCGGATATCGAAACG  69

Query  61   ACATTCCCTGATATCAACAAGTTTGTTACATCAATCACATCTGTCAAGCGGCTTTCATTA  120
            |||| ||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct  70   ACATACCCCGATATCAACAAGTTTGTAACATCAATCACATCTGTCAACCGGCTTTCATTA  129

Query  121  TGCGTAAGAGTCAA--C-GCGGAAGAGCTTGAGAATCTGAAGCTTTGTCCATGTGATGCA  177
            || |||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct  130  TGTGTAAGAGTCAACTCTGCGGAAGAGCTTGAGAATCTGAAGCTTTGTCCATGTGATGCA  189

Query  178  AATTGGTCAAAGTTACTTGTCCGGTTTCTCGAAAATTCTCCTAATTTACGAGAGCTAGAG  237
            ||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||||||
Sbjct  190  AATTGGTCAAAGTTACTTGTCCGTTTTCTCGAAAATTCGCATAATTTACTAGAGCTAGAG  249

Query  238  ATCGATCTGAATGATGATCATAAAGATAGTTGTTTGG---ATCCACTGGTTTGCTTGGAG  294
            ||||||||||| |||||||||| |||||||||| |||   ||||||||||||||||||||
Sbjct  250  ATCGATCTGAACGATGATCATATAGATAGTTGTGTGGTCGATCCACTGGTTTGCTTGGAG  309

Query  295  AATCAATTGAACTATGTTCCTGAATGTTTGAGGTCGAGTCTCGAAACTTTCAAGTGGACA  354
            ||||| ||||||||||||||||||||||||||||||| ||||||||||   |||||||||
Sbjct  310  AATCAGTTGAACTATGTTCCTGAATGTTTGAGGTCGAATCTCGAAACT---AAGTGGACA  366

Query  355  GGTATACATGGATCACAGAAAGAGATAGAGCTGGTTAAATATATTTTGAGAAATGCTTGT  414
            || || |||||||||||||||||||||||  || ||||||||||||||||||||||||||
Sbjct  367  GGGATGCATGGATCACAGAAAGAGATAGATATGCTTAAATATATTTTGAGAAATGCTTGT  426

Query  415  TGCTTAAAGACTGCGACAATCTTGTTTCAGTCTACTACTACAGAGACAGAGGATAAACGT  474
            ||||||||||||||||||||||||||| |||||||| |  |||| ||||||||||||| |
Sbjct  427  TGCTTAAAGACTGCGACAATCTTGTTTAAGTCTACT-C--CAGATACAGAGGATAAACAT  483

Query  475  AAGACGATGATCCAGGAGTTGTTACTTTCTTCTCGAAGTTCAACAACATGCCAACTCGTA  534
            ||||||||||||||||||||||||||||||||   ||   |||||   ||||||||||||
Sbjct  484  AAGACGATGATCCAGGAGTTGTTACTTTCTTC---AA---CAACA---TGCCAACTCGTA  534

Query  535  TTTGATTG  542
            ||||||||
Sbjct  535  TTTGATTG  542


> AT4G15060.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), 
F-box domain, Skp2-like (InterPro:IPR022364), 
FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); 
BEST Arabidopsis thaliana protein match 
is: FBD, F-box and Leucine Rich Repeat domains containing protein 
(TAIR:AT1G55660.1); Has 30201 Blast hits to 17322 proteins 
in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes 
- 2996 (source: NCBI BLink). | chr4:8599035-8601761 FORWARD 
LENGTH=1620
Length=1620

 Score =  167 bits (90),  Expect = 1e-40
 Identities = 128/146 (88%), Gaps = 4/146 (3%)
 Strand=Plus/Plus

Query  1     GATAGCTACTCCTATGAT-TTTCAAGATATGTCTAAGTTAGAGGTGGCGGATATCGAAAC  59
             |||||||||||||| | | ||| |||||||| |||||||||||| |||| |||| ||  |
Sbjct  1249  GATAGCTACTCCTACG-TCTTTAAAGATATGCCTAAGTTAGAGGAGGCGCATATTGATTC  1307

Query  60    GACATTCCCTGATATC-AACAAGTTTGTTACATCAATCACATCTGTCAAGCGGCTTTCAT  118
             ||||| ||||||||||  | |||||||||| |||||||||||||||||||||||||||||
Sbjct  1308  GACATACCCTGATATCGGA-AAGTTTGTTAGATCAATCACATCTGTCAAGCGGCTTTCAT  1366

Query  119   TATGCGTAAGAGTCAACGCGGAAGAG  144
             ||||||||| ||| ||||| ||||||
Sbjct  1367  TATGCGTAAAAGTTAACGCCGAAGAG  1392



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25971053999


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5