BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493383
Length=2052
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15040.1 | Symbols: | Subtilisin-like serine endopeptidase ... 3042 0.0
> AT4G15040.1 | Symbols: | Subtilisin-like serine endopeptidase
family protein | chr4:8581373-8584122 REVERSE LENGTH=2064
Length=2064
Score = 3042 bits (1647), Expect = 0.0
Identities = 1936/2073 (93%), Gaps = 30/2073 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGCTCTTCCTTCAAAAGCTTCTTACTCTCCTATGTCCCACCATCAAAATATCCTT 60
|||||||||||||| |||||| |||||||||||||||||| |||||||| |||||||||
Sbjct 1 ATGGGAGCTCTTCCATCAAAAATTTCTTACTCTCCTATGTCTCACCATCAGAATATCCTT 60
Query 61 CAAGAAGTTATTGAATCAAGTAATTCCATAGAAGATTCTTTGGTTAGAAGCTATGGAAGA 120
|||||||| || |||||||| |||| | ||||||| |||||| |||||||||||||||
Sbjct 61 CAAGAAGTCATCGAATCAAG---TTCCGTTGAAGATTATTTGGTCAGAAGCTATGGAAGA 117
Query 121 AGTTTCAATGGTTTTGCAGCCAAACTTACTGAATCTGAAAAAGATAAACTTATTGGCATG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AGTTTCAATGGTTTTGCAGCCAAACTTACTGAATCTGAAAAAGATAAACTTATTGGCATG 177
Query 181 GAAGGTGTGGTTTCCGTATTCCCAAGCACCGTTTATAAGCTTTTGACAACAAGATCTTAT 240
|||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 178 GAAGGTGTGGTTTCGGTATTCCCAAGCACCGTTTATAAGCTTTTTACGACAAGGTCTTAT 237
Query 241 GAGTTCATGGGACTTGGTGACAAGAGTAACCATGTCCCTGAGGTCGAGAGCAATATAATA 300
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||
Sbjct 238 GAGTTCATGGGACTTGGTGACAAGAGCAACAATGTCCCTGAGGTCGAGAGCAATGTAATA 297
Query 301 GTTGGTGTAATCGACGGCGGAATCTGGCCTGAATCCAAGAGTTTTTCAGACCAAGGCATT 360
|| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 298 GTAGGTGTAATAGACGGCGGAATCTGGCCTGAATCCAAAAGTTTTTCAGATGAAGGCATT 357
Query 361 GGCCCAATACCAAAGAAATGGAAAGGAACTTGCGCAGGAGGAACTAATTTCAGCTGCAAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 358 GGCCCAATACCAAAGAAATGGAAAGGAACTTGCGCAGGAGGAACTAATTTCACCTGCAAT 417
Query 421 AGAAAGGTGATTGGAGCACGACACTATGTGCAGGACTCGGCAAGAGACAGTGACGCTCAT 480
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 418 AGAAAGGTGATTGGAGCCCGACACTATGTGCACGACTCCGCAAGAGACAGTGACGCTCAC 477
Query 481 GGATCACACACGGCTTCAACAGCCGCAGGAAACAAAGTAAAAGGAGTGAGTGTGAACGGT 540
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 478 GGGTCACACACGGCTTCAACAGCAGCAGGAAACAAAGTAAAAGGAGTGAGTGTGAACGGT 537
Query 541 GTAGCAGAAGGAACTGCAAGAGGTGGTGTGCCTTTAGGTAGAATTGCTGTTTACAAAGTG 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTGGCAGAAGGAACTGCAAGAGGTGGTGTGCCTTTAGGTAGAATTGCTGTTTACAAAGTG 597
Query 601 TGCGAGCCAGCGGGTTGCAGTGGCGATA-GACTGTTGGCTGCGTTTGACGATGCTATAGC 659
||||||||| |||||||| ||| || | || | ||||||||||| ||||||||||||||
Sbjct 598 TGCGAGCCATTGGGTTGCAATGGTGA-ACGAATTTTGGCTGCGTTCGACGATGCTATAGC 656
Query 660 GGATGGGGTCGATGTTATAACCATTTCTCTTGGAGGCGGTGTTACTAAAGTTGACAATGA 719
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 657 GGATGGGGTAGATGTTTTAACCATTTCTCTTGGAGGCGGTGTTACTAAAGTTGACATTGA 716
Query 720 CCCTATTGCTATAGGATCATTTCACGCGATGACCAAAGGGATTGTTACCACGGTAGCGGT 779
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CCCTATCGCTATTGGATCATTTCACGCGATGACCAAAGGGATTGTTACCACGGTAGCGGT 776
Query 780 TGGAAACGCCGGCTCTGCACTTGGAAAAGCGGATAACCTTGCACCGTGGGTCATATCGGT 839
|||||| |||||| ||||||| | ||||||||||||||||||||| ||| ||||||| ||
Sbjct 777 TGGAAATGCCGGCACTGCACTCGCAAAAGCGGATAACCTTGCACCATGGCTCATATCCGT 836
Query 840 GGCTGCTGGCTCTACTGATAGAAAATTTGTTACTAATGTGGTTAATGGAGATGACAAGAT 899
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GGCTGCTGGCTCTACTGACAGAAAATTTGTTACTAATGTGGTTAATGGAGATGACAAGAT 896
Query 900 GATACCTGGAAGATCGATCAATGACTTTGACTTAAAGGGAAAGAAGTATCCTTTGGCGTA 959
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 897 GTTACCTGGAAGATCGATCAATGACTTTGACTTAGAGGGAAAGAAGTATCCTTTGGCGTA 956
Query 960 CGGAAAAACTGCTTCAAACAACTGTACAGAGGAGCTAGCAAGGGGTTGCGCTAGCGGTTG 1019
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGGAAAAACTGCTTCAAATAACTGTACAGAGGAGCTAGCAAGGGGTTGCGCTAGCGGTTG 1016
Query 1020 CCTGAACACAGTGGAAGGAAAGATTGTTGTGTGCGATGTTCCAAATAATGTAATGGAACA 1079
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1017 CCTGAACACGGTGGAAGGAAAGATTGTTGTGTGCGATGTTCCAAATAATGTTATGGAACA 1076
Query 1080 GAAAGCAGGGGGTGCGGTTGGAACTATCCTTCATGTAACCGATGTTGATACTCCCGGTCT 1139
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1077 GAAAGCAGCGGGTGCGGTTGGAACTATCCTTCATGTAACTGATGTTGATACTCCCGGTCT 1136
Query 1140 TGGTCCTATTGCGGTTGCAACCTTAGATGATACCAATTATGAAGCATTAAGATCTTACAT 1199
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |
Sbjct 1137 TGGTCCTATTGCCGTTGCAACCTTAGATGATACCAATTATGAAGAATTAAGATCCTACGT 1196
Query 1200 TCTCTCCTCACCAAACCCGCAAGGAACTATATTGAAGAGTGCGACAGTTAAAGATAATGA 1259
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1197 TCTCTCCTCACCAAACCCGCAAGGAACTATATTGAAGACCAATACAGTTAAAGACAATGG 1256
Query 1260 TGCTCCAATTGTTCCTACCTTCTCTTCTCGCGGTCCAAACACTCTCTTTAGTGACATTTT 1319
||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TGCTCCAGTCGTTCCTGCCTTCTCTTCTCGCGGTCCAAACACTCTCTTTAGTGACATTTT 1316
Query 1320 GA--A--G--C-CT------GATATAACAGCTCC-AGGAGTCAATATATTAGCAGCATAT 1365
|| | | | || || ||||| | || | |||||||||||||||||||||||
Sbjct 1317 GAGTAACGAACACTCAAAACGAAATAACCGA-CCTATGAGTCAATATATTAGCAGCATAT 1375
Query 1366 TCACCATTGGCTCAAACCGCGCTTCCTGGACAAAGCGTGGATTACTATTTCATGACCGGA 1425
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1376 TCACCACTGGCTCAAACCGCG-TTCCTGGACAAAGCGTGGATTACTATTTCATGACGGGA 1434
Query 1426 ACATCTATGGCTTGCCCTCATGTCGCAGGTGTAGCTGCTTATGTCAAGACACTACGTCCT 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 ACATCTATGGCTTGCCCTCATGTCGCAGGTGTAGCTGCTTATGTCAAGACACTACGTCCT 1494
Query 1486 GATTGGTCTGCTTCTGCCGTCAAATCTGCTATCATGACTACTGCTTGGGCAATGAACGCT 1545
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1495 GATTGGTCTGCTTCTGCCATCAAATCTGCTATCATGACTACCGCTTGGGCAATGAACGCT 1554
Query 1546 TCGAAAAATGCAGAAGCTGAGTTTGCATATGGATCAGGATTTGTTAACCCTTCAGTGGCA 1605
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1555 TCGAAAAATGCAGAAGCTGAGTTTGCATACGGATCAGGATTTGTTAACCCTACAGTGGCA 1614
Query 1606 GTTGATCCAGGACTTGTTTACAAAATAGCCAAAGAGGATTACTTGAACGTGCTTTGCTCT 1665
||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1615 GTTGATCCAGGGCTTGTTTACGAAATAGCCAAAGAGGATTACTTGAACATGCTTTGCTCT 1674
Query 1666 TTGGACTACTCATCT-AATGGCATTAGTACTATTGCGGGTGGAACTTTTACTTGTTCTGA 1724
||||||||||| ||| || || |||||||| |||||||||||||| ||||||||||||||
Sbjct 1675 TTGGACTACTCTTCTCAA-GGAATTAGTACCATTGCGGGTGGAACCTTTACTTGTTCTGA 1733
Query 1725 ACAATCAAAGCTTACTATGAGAAATCTCAACTACCCTTCAATGGCAGCCAAAGTTTCAGC 1784
||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 1734 ACAATCAAAGCTTACTATGAGAAATCTAAACTACCCTTCAATGTCAGCCAAAGTGTCAGC 1793
Query 1785 TTCATC-T-T-CAGATATCACTTTTTCAAGAACAGTCACCAACGTTGGGAAAAAGGGATC 1841
|||||| | | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1794 TTCATCGTCTTCAGATATCACTTTTTCAAGAACAGTCACCAACGTTGGGGAAAAGGGATC 1853
Query 1842 CACTTACAAGGCAAAATTGTCTGGCGA-TCCCAAACTCAGTATCAAGGTCGAACC-GAAT 1899
|||||||||||||||||||||||| || |||||||||||| |||||||| || || | |
Sbjct 1854 CACTTACAAGGCAAAATTGTCTGG-GAATCCCAAACTCAGCATCAAGGTTGAGCCAGC-T 1911
Query 1900 ACGCTCTCTTTCAAGTCACCAGGGGAGAAGAAGTCTTACACCGTTACAGTCTCTGGCAAG 1959
|| |||||||||||| | ||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1912 ACACTCTCTTTCAAGGCGCCAGGGGAGAAGAAGTCTTTCACCGTTACAGTCTCTGGAAAG 1971
Query 1960 AGTCTTGCTGGTATTTCTAGTATTGTGTCGGCGTCTCTGATTTGGTCGGATGGATCACAC 2019
|||||||| |||||||||| |||||||||||| |||||||||||||||||||| ||||||
Sbjct 1972 AGTCTTGCGGGTATTTCTAATATTGTGTCGGCATCTCTGATTTGGTCGGATGGTTCACAC 2031
Query 2020 AATGTGAGAAGTCCTATTGTTGTGTATACTTAG 2052
|||||||||||||||||||||||||||||||||
Sbjct 2032 AATGTGAGAAGTCCTATTGTTGTGTATACTTAG 2064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101706304170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5