BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493386
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15010.1 | Symbols: | Mitochondrial substrate carrier famil... 2013 0.0
> AT4G15010.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr4:8572905-8575231 REVERSE LENGTH=1575
Length=1575
Score = 2013 bits (1090), Expect = 0.0
Identities = 1276/1365 (93%), Gaps = 16/1365 (1%)
Strand=Plus/Plus
Query 1 AACGGcgtcgtcttctcttctccgattagcgtcagtcgtcttcttcgtcttctcaggtct 60
|||| ||||||||| |||||||||||||||||| |||||||||||||||||||| | |
Sbjct 4 AACGACGTCGTCTTTTCTTCTCCGATTAGCGTCGGTCGTCTTCTTCGTCTTCTC-TCTGT 62
Query 61 ctctgatctGGGTTTTGCTTCAACGTGAAACAGCACTGAGTTTGAAGATGAAGTTTCTGT 120
| |||||||||||||||||||||||||||||| | |||| |||| ||||| ||||||||
Sbjct 63 CGCTGATCTGGGTTTTGCTTCAACGTGAAACATCTTTGAGGTTGATGATGAGGTTTCTGT 122
Query 121 TTACTTAATATCCTGTGAGAG-AAACGTATTTTTGAC-TGTAGAGTTGCTGACAAAAACG 178
||||||||||||||||||||| |||| | || ||||| || || ||||||||||||||||
Sbjct 123 TTACTTAATATCCTGTGAGAGAAAAC-TCTTCTTGACTTG-AGTGTTGCTGACAAAAACG 180
Query 179 TTATAGGTATATGTACATTTGTTTTCGCAGAGGCATTTCGTCGAAAGATGGATAAGCTTC 238
||||||||||||||||||||||||||| |||| | | |||||||||||||||||
Sbjct 181 -TATAGGTATATGTACATTTGTTTTCGCTGAGG-----C-T--AAAGATGGATAAGCTTC 231
Query 239 TTGAGAATCATCAGTTTGCGACGCATGCCATCGCCGCCTCGGCATCTGTCTCGTTAGGAA 298
|||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 232 TTGAGAATCATCAGTTTGCGACACATGCCATCGCTGCCTCGGCCTCTGTCTCGTTAGGAA 291
Query 299 CTGCTCTCGCTTATCCTTTAGATACCATCAAAACTATAATCCAGGTTGGTTCAGGACCCA 358
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 292 CTGCTCTCGCTTATCCTTTAGATACCATCAAAACCATTATCCAGGTTGGTTCAGGACCCA 351
Query 359 ATAAGAAATTAAGCTCCTTTCAAGTTGTGAATAGAGTTCTCCGATTCTCTGGCTATTCAG 418
|||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 352 ATAAGAAATTAAGCTCCTTTCAAGTTTTTAATAGAGTTCTTCGATTCTCTGGCTATTCAG 411
Query 419 GTCTGTACAGTGGTCTTGGATCGTTAACTTTAGGAAGAATTTCAGGTGTTGGTGGAAGGT 478
||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct 412 GTCTGTACAGTGGTCTTGGATCGTTAACTTTAGGAAGAATTTCTGGTTTTGGTGCAAGGT 471
Query 479 TTGGTGTCTATGAGATTCTAACAGCTTTCTACAAAGATGGTCGACATGATAACTATGTGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 472 TTGGTGTCTATGAGATTCTAACAGCTTTCTACAAAGATGGTCGACATGATAACTACGTGA 531
Query 539 GTGTCGGTGAGGCTTTTCTGGCTGGGATGGTGGGAGGTGCAGCTGAAACAGTGATGACAT 598
|||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||| |
Sbjct 532 GTGTTGGTGAAGCTTTTCTGGCTGGTCTGGTGGGAGGTGCAGCAGAAACAGTGATGACTT 591
Query 599 CTCCATTTGAGCTAATCAAAGTCCGAAAACAAGTGACTGCTGCATCACGAGCTCCAAATG 658
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 592 CTCCATTTGAGCTAATCAAAGTCCGAAAACAAGTGACTGCTGCATCACGGGCTCCAAATG 651
Query 659 CTACAGCTGTTGCAGAAACCGCACCGGTTTCACCCATGCTCACAAAATTGCTAAGGAGAT 718
|| | ||||||||||| ||||||||||| ||||||||| |||||||| ||||||| ||||
Sbjct 652 CTTCCGCTGTTGCAGAGACCGCACCGGTCTCACCCATGATCACAAAACTGCTAAGAAGAT 711
Query 719 ACACTCTTGATGTAAAGTCATTGACACAAACAGTCAGTCTCTTATCTGTCTTAAATCACA 778
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 712 ACACTCTTGATGTAAAGTCATTGACACAAACAGTCAGTCTCTTATCCGTCTTAAATCACA 771
Query 779 AACACCCAAACATGACCGCCGCTTTGCAAGAGTACCCGTGGATGATGACTGGAACAGGAA 838
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 772 AACACCCAAACATGACAGCTGCTTTGCAAGAGTACCCTTGGATGATGACTGGAACAGGAA 831
Query 839 ACCCGCCATCAGCCATGGATGTTAAAAGACCGCTCGATGTTGCATCGCTTGAAGGATATA 898
|||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 832 ACCCACCATCAGCCATGGATGTTAAGAGACCGCTCGATGTTGCATCACTTGAAGGATATA 891
Query 899 GAGCTTTATGGAGGAATCTACGTTCGGGTCTTGTAAGAGATTGTATTTACGGAGGAGTGT 958
||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| |
Sbjct 892 GAGCTTTATGGAGGAATCTACGTTCAGGTCTTATAAGAGATTGTATTTACGGTGGAGTAT 951
Query 959 TCTTCTCAACATGGCAGTTTCTTCACGAGGCAATGGTCGGTTGGAAAGCCGTCGGGATGA 1018
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 952 TCTTTTCAACATGGCAGTTTCTTCACGAGGCAATGGTCGGTTGGAAAGCTGTTGGGATGA 1011
Query 1019 ATCCTCTGCCCAGTTCTGAAGAAGAAATTGGACCTTTATCACCAGTAGCCATTAGCGTTG 1078
|||||||||||||||||||||||||| ||||||||||||| || |||||||||||| |||
Sbjct 1012 ATCCTCTGCCCAGTTCTGAAGAAGAAGTTGGACCTTTATCTCCGGTAGCCATTAGCCTTG 1071
Query 1079 CCGCTGGGTTTTCTGGTGCCATTGCAGCTGCAGCATCACATAGCTTTGATACAGCAAGAA 1138
| |||||| | ||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1072 CTGCTGGGATATCTGGTGCCGTTGCAGCTGCAGCATCACATAGCTTTGACACAGCAAGAA 1131
Query 1139 CACGTGCACAGTGTGTAATATTGCCAAAATATACAGCAAAAGAGAGGAAGTTTCTAAGAT 1198
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||
Sbjct 1132 CACGTGCACAGTGTGTAATATTGCCAAAGTATACAGCAAAGGAGAGGAAGTTTCTAAAAT 1191
Query 1199 GGAATAAACCAGGGAAGAGATTAGAGAGATGGACAGGAATCCATCCTACAGACAGAAATC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GGAATAAACCAGGGAAGAGATTAGAGAGATGGACAGGAATCCATCCTACAGACAGAAATC 1251
Query 1259 TCCTGTTCCGAGGAATCTGG-ATAAGGATGGCTCGAAGCTCTGTTGCATCGACGGTGATC 1317
|| |||||||||| || ||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1252 TCTTGTTCCGAGGTAT-TGGGATGAGGATGGCTCGAAGCTCTGTTGCATCGACTGTGATC 1310
Query 1318 GTAGGAAGCTATTACTTAGCTGTCGATTTATTGGTTCCCAAGTGA 1362
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GTAGGAAGCTATTACTTAGCTGTCGATTTATTGGTTCCCAAGTGA 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70180361910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5