BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493389
Length=658
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15000.1 | Symbols: | Ribosomal L27e protein family | chr4:... 961 0.0
AT3G22230.1 | Symbols: | Ribosomal L27e protein family | chr3:... 536 9e-152
> AT4G15000.1 | Symbols: | Ribosomal L27e protein family | chr4:8571833-8572489
FORWARD LENGTH=657
Length=657
Score = 961 bits (520), Expect = 0.0
Identities = 620/665 (93%), Gaps = 20/665 (3%)
Strand=Plus/Plus
Query 1 ACTTAGGGTTCATAGCAGCC--AGAGAGAGACGAA--GAGAGGGATCTACCAAACGAAGC 56
|||||||||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 1 ACTTAGGGTTCATAGCAGCCAGAGAGAGAGAC-AAGTGAGAGGGATCTACCAAACGAAGC 59
Query 57 AACAATGGTGAAGTTCTTGAAGCAGAACAAGGCCGTGATCCTTCTTCAAGGTCGTTACGC 116
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 AACAATGGTGAAGTTCTTGAAGCAGAACAAGGCCGTGATCCTTCTTCAAGGACGTTACGC 119
Query 117 CGGAAAGAAAGCCGTCATCATCAAATCCTTCGACGACGG-AACCCGTGATCGTGCATACG 175
||||||||||||||||||||||||||||||||||||||| || |||||||||| | ||||
Sbjct 120 CGGAAAGAAAGCCGTCATCATCAAATCCTTCGACGACGGTAA-CCGTGATCGTCCTTACG 178
Query 176 GACACTGCCTCGTCGCCGGACTGAAGAAGTACCCAAGCAAAGTCATCCGCAAAGACTCAG 235
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 179 GACACTGCCTCGTCGCCGGACTCAAGAAGTACCCGAGCAAAGTCATCCGCAAAGACTCAG 238
Query 236 CGAAGAAGACAGCTAAGAAATCTAGGGTTAAGTGTTTCATCAAGCTTGTTAATTACCAGC 295
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTAAGAAGACAGCTAAGAAATCTAGGGTTAAGTGTTTCATCAAGCTTGTTAATTACCAGC 298
Query 296 ATCTGATGCCTACACGTTACACACTAGACGTGGATCTCAAGGAAGTTGCGACTCTTGATG 355
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 299 ATCTGATGCCTACTCGTTACACACTCGACGTGGATCTCAAGGAAGTGGCGACTCTTGATG 358
Query 356 CTCTTCAGAGTAAGGATAAGAAGGTTGCTGCTCTTAAGGAAGCTAAGGCTAAGCTTGAGG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTCTTCAGAGTAAGGATAAGAAGGTTGCTGCTCTTAAGGAAGCTAAGGCTAAGCTTGAGG 418
Query 416 AGAGGTTCAAGACTGGTAAGAACAGATGGTTCTTTACTAAGCTCAGGTTCTGAAGAAATC 475
|||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 419 AGAGGTTCAAAACCGGTAAGAACAGATGGTTCTTTACCAAGCTCAGGTTCTGAAGAAATT 478
Query 476 TTGGATTTCGAAAGGAAGACATTTTGAGCTTTTTGTTATTGAAATTTATCGTATTTTTAG 535
|| |||||| ||||| |||||||||| ||||||||| | | || |||||||
Sbjct 479 TTCTATTTCGTGAGGAATTCATTTTGAGCGTTTTGTTATCG---T-----GT-TTTTTAG 529
Query 536 TTTCTAGGGTTCATTTCCTATGGTGAAAAATGTGGATCCTGttttggattgtggaagatg 595
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TTTCTAGGGTTCATTTCCCATGGTGAAAAATGTGGATCCTGTTTTGGATTGTGGAAGATG 589
Query 596 ttttgttgaaatttggattatggattttgc-cttttattttgattctctattgcatt-tt 653
|||||||||| |||||||||||||||| | ||||||||||||||||||| |||||| ||
Sbjct 590 TTTTGTTGAAGTTTGGATTATGGATTT-GATCTTTTATTTTGATTCTCTAATGCATTCTT 648
Query 654 gattt 658
||||
Sbjct 649 -ATTT 652
> AT3G22230.1 | Symbols: | Ribosomal L27e protein family | chr3:7843967-7844597
REVERSE LENGTH=631
Length=631
Score = 536 bits (290), Expect = 9e-152
Identities = 380/422 (90%), Gaps = 12/422 (3%)
Strand=Plus/Plus
Query 57 AACAATGGTGAAG-TTCTTGAAGCAGAACAAGGCCGTGATCCTTCTTCAAGGTCGTTACG 115
||||||||||||| ||| ||||||||||||| || |||||||| |||||||| |||||||
Sbjct 51 AACAATGGTGAAGTTTC-TGAAGCAGAACAAAGCGGTGATCCTCCTTCAAGGCCGTTACG 109
Query 116 CCGG-AAAGAAAGCCGTCATCATCAAATCCTTCGACGACGGAACCCGTGATCGTGC-ATA 173
|||| ||| || || || ||||||||||||||||| ||||||||| |||| ||| | ||
Sbjct 110 CCGGCAAA-AAGGCAGTGATCATCAAATCCTTCGATGACGGAACCAGTGACCGT-CGTTA 167
Query 174 CGGACACTGCCTCGTCGCCGGACTGAAGAAGTACCCAAGCAAAGTCATCCGCAAAGACTC 233
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 168 CGGACACTGCCTCGTCGCCGGACTGAAGAAGTACCCGAGCAAAGTCATCCGCAAAGACTC 227
Query 234 AGCGAAGAAGACAGCTAAGAAATCTAGGGTTAAGTGTTTCATCAAGCTTGTTAATTACCA 293
|||||||||||| || |||||||| || || || |||||||||||||| || ||||||||
Sbjct 228 AGCGAAGAAGACGGCGAAGAAATCAAGAGTGAAATGTTTCATCAAGCTCGTGAATTACCA 287
Query 294 GCATCTGATGCCTACACGTTACACACTAGACGTGGATCTCAAGGAAGTTGCGACTCTTGA 353
|||||||||||||||||||||||| || || || ||||| |||||||| |||||||||||
Sbjct 288 GCATCTGATGCCTACACGTTACACGCTCGATGTAGATCTGAAGGAAGTAGCGACTCTTGA 347
Query 354 TGCTCTTCAGAGTAAGGATAAGAAGGTTG-CTGCTCTTAA-GGAAGCTAAGGCTAAGCTT 411
||||||| ||||||||||||||||||| | ||||| |||| |||||||||||||||||||
Sbjct 348 TGCTCTTAAGAGTAAGGATAAGAAGGT-GACTGCT-TTAAAGGAAGCTAAGGCTAAGCTT 405
Query 412 GAGGAGAGGTT-CAAGACTGGTAAGAACAGATGGTTCTTTACTAAGCTCAGGTTCTGAAG 470
||||| | ||| ||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 406 GAGGA-ACGTTTCAAGACTGGGAAGAACAGGTGGTTCTTTACTAAGCTCAGGTTCTGAAG 464
Query 471 AA 472
||
Sbjct 465 AA 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31798215051
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5