BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493397
Length=2087
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14940.1 | Symbols: ATAO1, AO1 | amine oxidase 1 | chr4:8541... 3053 0.0
> AT4G14940.1 | Symbols: ATAO1, AO1 | amine oxidase 1 | chr4:8541879-8544566
FORWARD LENGTH=2215
Length=2215
Score = 3053 bits (1653), Expect = 0.0
Identities = 1899/2019 (94%), Gaps = 12/2019 (1%)
Strand=Plus/Plus
Query 1 ATGAACACA-CACATACTTGCCCTAGTTTTCCTCCTACAATGTGCTTTCACTTTTGGTCT 59
||||||||| || ||||||||| || |||| ||| ||||||||| ||||||| |||||||
Sbjct 1 ATGAACACATCA-ATACTTGCCATACTTTTTCTCATACAATGTGTTTTCACTCTTGGTCT 59
Query 60 TCATTTCCACCCACTTGATCCCTTAACTCCCCAAGAAATC-ACTAAAACAAGCTTCATCG 118
||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 60 CCATTTCCACCCACTTGATCCCTTAACTCCCCAAGAAATCAAC-AAAACAAGCTTTATCG 118
Query 119 TCAAGAAATCTCATCTAGGCAATCTCAAAGATCTCACATTTCACTACCTCGACCTCGAAG 178
|||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 119 TCAAGAAATCTCATCTAGGCAACCTCAAAGATCTCACATTTCATTATCTCGACCTCGAAG 178
Query 179 AACCAAACAAGAGCCACGTCCTCCAATGGCTATCGCCAATTCCCTCCAAGAAACCACCAC 238
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 179 AACCAAACAAGAGCCACGTCCTCCAATGGCTATCACCAAATCCCTCCAAGAAACCACCAC 238
Query 239 CGCCACGTCGTCGCTCACTCGTGGTAGTTCGAGCCGGTGGTCAAACCCACGAGCTTATCA 298
| ||||||||||||||| |||| || ||||||||||||||||||||| ||||||| ||||
Sbjct 239 CCCCACGTCGTCGCTCATTCGTCGTGGTTCGAGCCGGTGGTCAAACCTACGAGCTCATCA 298
Query 299 TCGACCTAACCACTAGCAAGATCGTATCCTCCCGCATCTACACCGGCCATGGATTCCCTT 358
||||||||||||| |||||||| | |||||||||||||||||| |||||||| ||||| |
Sbjct 299 TCGACCTAACCACGAGCAAGATTGCATCCTCCCGCATCTACACAGGCCATGGTTTCCCCT 358
Query 359 CATTAACATTCATAGAGCTTTTCAGAGCTAGCAAGCTTCCTCTAACTTACCCACCTTTCA 418
|||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 359 CATTCACATTCATAGAGCTTTTCAAAGCAAGCAAGCTTCCTCTAACTTACCCACCTTTCA 418
Query 419 AGAAATCGATTCTTGATCGAGCCCTCAACATCTCCGAGGTTTCTTGCATCCCTTTCACCG 478
||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 419 AGAAATCGATTCTCGATCGATCCCTAAACATCTCCGAGGTTTCTTGCATCCCTTTCACCG 478
Query 479 TTGGTTGGTACGGAGAAACCACCACGAGACGTGAAGTCAAAGCTTCTTGCTTTTACAGAG 538
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 479 TTGGTTGGTACGGAGAAACCACCACGAGACGTGAACTCAAAGCCTCTTGCTTTTACAGAG 538
Query 539 ACGGATCTGTCAACGTCTTCACAAGACCCATCGAAGGAATCACCGTAACTATAGACGTTG 598
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 539 ACGGATCAGTCAACGTCTTCACAAGACCCATCGAAGGAATCACCGTAACTATAGACGTCG 598
Query 599 ACTCAATGCAAGTCGTGAAGTACTCCGACAGATTCCGAAAGCCTCTCCCTGATAAAGAAG 658
|||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 599 ACTCAATGCAAGTCATCAAGTACTCCGACAGATTCCGAAAGCCTATCCCTGATAAAGAAG 658
Query 659 GTAACGACTTTCGAACCAAACACAAACCCTTCCCATTCTCTTGCAACGTCTCCGACACAG 718
||||||||||| | || ||||||| ||||||||| |||| ||||||||||||||||||||
Sbjct 659 GTAACGACTTTAGGACTAAACACAGACCCTTCCCGTTCTTTTGCAACGTCTCCGACACAG 718
Query 719 GCTTCAAGATACTCGGCAATAGAGTCAAGTGGGCTAACTGGAAATTCCACGTCGGATTTA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GCTTCAAGATACTCGGCAATAGAGTCAAGTGGGCTAACTGGAAATTCCACGTCGGATTTA 778
Query 779 CAGCAAGAGCGGGAGTAACCATATCGACGGCTTCGGTTCTTGACCCGAGAACCAAAAGGT 838
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CCGCAAGAGCGGGAGTAACTATATCGACGGCTTCGGTTCTTGACCCGAGAACCAAAAGGT 838
Query 839 TTCGACGAGTGATGTACAGAGGACACGTGTCAGAGACTTTTGTTCCGTACATGGACCCAA 898
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 TTCGACGAGTGATGTATAGAGGGCACGTGTCAGAGACTTTTGTTCCGTACATGGACCCAA 898
Query 899 CCTACGAATGGTACTACCGTACGTTCATGGACATCGGAGAGTTCGGTTTCGGGAGATCCG 958
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 899 CCTACGAATGGTACTACCGTACGTTCATGGACATTGGAGAGTTTGGTTTCGGGAGATCCG 958
Query 959 CCGTGACTCTGCAGCCACTCATTGACTGCCCGCAAAACGCTGCGTTTTTAGATGGACACG 1018
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 CCGTGAATCTGCAGCCACTCATTGACTGCCCGCAAAACGCTGCGTTTTTAGATGGGCACG 1018
Query 1019 TGGCCGGACCAGATGGGACAGCTCAGAGGATGACCAATGTGATGTGTGTCTTCGAGAAAA 1078
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1019 TGGCCGGACCAGATGGGACAGCTCAGAAGATGACCAATGTGATGTGTGTATTCGAGAAAA 1078
Query 1079 ACGGTTACGGTGCTTCTTTTAGACACACCGAGATTAATGTTCCAGGACAAGTGATAACAA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ACGGTTACGGTGCTTCTTTTAGACACACCGAGATTAATGTTCCAGGACAAGTGATAACAA 1138
Query 1139 GTGGGGAAGCTGATATAAGTTTAGTGGTTAGAATGGTGGCCACGCTTGGAAACTATGATT 1198
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1139 GTGGGGAAGCTGAAATAAGTTTAGTGGTTAGAATGGTGGCCACACTTGGAAACTATGATT 1198
Query 1199 ACATTGTGGATTGGGAATTTAAAAAGAATGGAGCCATCAGAGTTGGGGTGGATTTGACTG 1258
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ACATAGTGGATTGGGAATTTAAAAAGAATGGAGCCATCAGAGTTGGGGTGGATTTGACTG 1258
Query 1259 GAGTTTTGGAAGTAAAAGCAACGTCGTACACGTCGAACGATCAAATAACGGATAACGTTT 1318
||||||| ||||||||||| || |||||||| || ||||||||||||||||| ||||| |
Sbjct 1259 GAGTTTTAGAAGTAAAAGCGACATCGTACACTTCAAACGATCAAATAACGGAGAACGTAT 1318
Query 1319 ACGGGACACTGGTGGCGAAGAACACCATCGCCGTTAACCACGACCATTACCTAACGTACT 1378
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1319 ACGGTACACTGGTGGCGAAGAACACTATCGCCGTTAACCACGACCATTACCTAACGTACT 1378
Query 1379 ACTTGGACCTCGACGTTGACGGTAACGGCAATTCTTTGGTGAAAGCGAAACTCAGAACGG 1438
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct 1379 ACTTGGACCTCGACGTTGACGGTAACGGCAATTCCTTGGTGAAAGCCAAACTCAAAACGG 1438
Query 1439 TAAGAGTAACGGACGTTAACAAAACGTCTTCTCGGAGGAAGAGTTACTGGACGGTCGTTA 1498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TAAGAGTAACGGAAGTTAACAAAACGTCTTCTCGGAGGAAGAGTTACTGGACGGTCGTTA 1498
Query 1499 AAGAGACGGCGAAAACAGAAGCTGATGGTAGAGTTCGACTCGGCTCAGAGCCGGTTGAGC 1558
|||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||
Sbjct 1499 AAGAGACGGCGAAAACGGAAGCTGACGGTAGAGTTCGACTCGGCTCGGATCCGGTTGAGC 1558
Query 1559 TATTAATAGTTAACCCTAAAAAGAAGAC-AAAGATAGGAAATACGGTTGGTTACCGGCTG 1617
| |||||||| ||||| || |||||||| ||| ||||||||||| |||||||||||||||
Sbjct 1559 TGTTAATAGTAAACCCGAACAAGAAGACGAAA-ATAGGAAATACAGTTGGTTACCGGCTG 1617
Query 1618 ATACCAGAACATTTACCAGTCACTTCGCTTTTAACCGACGATGATTACCCGGAGATAAGA 1677
||||| |||||||||| || |||||||||||||||||| ||||||||||| ||| |||||
Sbjct 1618 ATACCGGAACATTTACAAGCCACTTCGCTTTTAACCGATGATGATTACCCCGAGTTAAGA 1677
Query 1678 GCCGGTTACACGAAATATCCGGTTTGGATTACTGCTTATAACCGGTCAGAAAGATGGGCC 1737
||||||||||||||||||||||||||| | || || ||| ||||||| || |||||||||
Sbjct 1678 GCCGGTTACACGAAATATCCGGTTTGGGTGACCGCCTATGACCGGTCCGAGAGATGGGCC 1737
Query 1738 GGTGGTTTTTATAGCGATAGGAGCCGTGGCGATGACGGTTTAGCTGTATGGAGTAGCAGG 1797
||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1738 GGTGGGTTTTATAGTGATCGGAGCCGTGGCGATGACGGTTTAGCTGTATGGAGTAGTAGG 1797
Query 1798 AACACAGAGATAGAGAACAAAGACATAGTGATGTGGTACAATGTTGGATTTCATCACATT 1857
|||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1798 AACAGAGAGATAGAGAACAAAGACATAGTGATGTGGTACAACGTTGGGTTTCATCACATT 1857
Query 1858 CCATACCAAGAGGATTTTCCGGTTATGCCCACTCTTCACGGTGGATTTACTCTTCGACCT 1917
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 1858 CCATACCAAGAGGATTTTCCGGTTATGCCAACTCTTCACGGTGGTTTTACTCTTCGGCCT 1917
Query 1918 TCCAATTTTTTCGATAATGATCCTTTGATTGGGTAAATACGG-CATCAGACAAACAAACT 1976
|| ||||| |||||||| |||||||||||||||||||||||| | | |||||||||||||
Sbjct 1918 TCAAATTTCTTCGATAACGATCCTTTGATTGGGTAAATACGGTCTT-AGACAAACAAACT 1976
Query 1977 GATGTTAGCCT-TGTAATGATTGACTTATGTTACGTCAA 2014
|||| || | |||| ||||||||||||||||||||||
Sbjct 1977 GATG---GCTTATGTATTGATTGACTTATGTTACGTCAA 2012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103463323245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5