BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493398
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14930.1 | Symbols: | Survival protein SurE-like phosphatas... 1664 0.0
> AT4G14930.1 | Symbols: | Survival protein SurE-like phosphatase/nucleotidase
| chr4:8538586-8541899 FORWARD LENGTH=1887
Length=1887
Score = 1664 bits (901), Expect = 0.0
Identities = 1057/1131 (93%), Gaps = 16/1131 (1%)
Strand=Plus/Plus
Query 102 TTTCTTACGGATTTCTCTGACTGGAGCGATGGAAATTGACGGTGGAGGAGATCGTATCTC 161
|||| ||||||||||||| || ||||||||||| ||||||||| ||||||||||| ||
Sbjct 218 TTTCGTACGGATTTCTCTAACCGGAGCGATGGAGATTGACGGT---GGAGATCGTATTTC 274
Query 162 CGGTGAACGACCGATCATTATGGTCACCAACGACGACGGCATAGACGCGCCTGG-CTTGC 220
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
Sbjct 275 CGGTGAACGACCGATCATTATGGTCACCAACGACGACGGAATAGACGCGCCTGGCCTT-C 333
Query 221 GTTCTCTGGTTCGCGTCCTCGTCTCCACTAACCTCTACGATGTTCGCGTCTGCGCTCCTA 280
||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 334 GTTCTCTTGTTCGTGTCCTCGTCTCCACTAACCTCTACGATGTTCGCGTTTGCGCTCCTG 393
Query 281 ATTCGGAGAAATCTGCTGTTAGTCACAGTATAATATGGAGTAGACCACTCACTGCAAAAC 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 ATTCGGAGAAATCTGCTGTTAGTCACAGTATAATATGGAGTAGACCACTCACTGCAAAAC 453
Query 341 GAGTAGAGATTGATGGAGCTACTGCTTATGCTGTTGATGGAACACCTGCGGATTGCACTG 400
|||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 454 GAGTAGAGATCGATGGAGCTACTGCTTATTCTGTTGATGGAACTCCTGCGGATTGCACTG 513
Query 401 GTTTGGGCTTATCGGAAGAACTTTTTCCTTCTCGTCCTGACCTGGTTCTTAGTGGTATAA 460
|||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 514 GTTTGGGCTTATCGGAAGCACTCTTTCCTTCTCGTCCTGACCTGGTTCTGAGTGGTATAA 573
Query 461 ACGTGGGTAGCAACTGCGGATATCACATCGTCTATTCTGGAACTGTTGCTGGCGCTCGTG 520
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 574 ACGTGGGTAGCAACTGCGGTTATAACATCGTCTATTCTGGAACTGTTGCTGGCGCTCGTG 633
Query 521 AAGCCTTCCTTTATGATGTGCCTTCTGCTTCCATATCATATGATTTTGATTGGAAACGTG 580
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 634 AAGCCTTCCTTTATGATGTGCCTTCTGCCTCCATATCATATGATTTTGATTGGAAACGTG 693
Query 581 GAGAGATGAATGCTAATGATTTTGTCCTTTCTGCCCAAGCTTGCTTGCCTATTATAAACG 640
|||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| ||||
Sbjct 694 GAGAGATGAATGCTAATGATTTTGCCCTTTCTGCCCAAGCCTGCTTGCCCATTATCAACG 753
Query 641 GCATACTCAGTGCGATCAAGAACAAAACTCATCCTATGCAATGCTTTCTGAATATCGATT 700
|||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 754 GCATACTCGGTGCAATCAAGAACAAAACTCACCCTATGCAATGCTTTCTGAATATCGATT 813
Query 701 TACCGACTGACATTGCTAACCATAAGGGATACAAACTAACTAGACAAGGTAAAAGCATGG 760
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 814 TGCCGACTGATATTGCTAACCACAAGGGATACAAACTAACTAGACAAGGTAAAAGCATGG 873
Query 761 GTAAAATGGGATGGAGACAAGTGGAAGAGAAAGCACAAGGGCCAAAGATGTTATCAACAA 820
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 874 GTAAAATGGGATGGAGACAAGTGGAAGAGGAAGCACAAGGGCCGAAGATGTTATCAACAA 933
Query 821 TGACAATGGATACAGAGTCAGGAGTAGTCTCGTCAGACAACGACACATCTGCTCATTCGA 880
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 934 TGACAATGGATACAGAGTCAGGAGTAGTCTCATCAGAGAACGACACATCTGCTCATGCGG 993
Query 881 AAAAAGATAGCCGTTTATTCAAAAGAGAGGTAAGGGGAAGCTTTAATGAAGAAGGGACTG 940
|||||||||||||||||||||||||||| |||||| |||| | | ||||||||||| ||
Sbjct 994 GAAAAGATAGCCGTTTATTCAAAAGAGAGTTAAGGGCAAGCATCAGTGAAGAAGGGAGTG 1053
Query 941 ATTCTCACTACCTAAAAGAAGGATTTATTACGGTGACGCCGCTTGGAGCTCTATCTCAGA 1000
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 ATTCTCATTACCTAAAAGAAGGATTTATTACGGTGACGCCGCTTGGAGCTCTATCTCAGA 1113
Query 1001 CTGATGTGGATTGCCAAAACTACTACAAAGAATGGCTTCCCAAGATTACAAACCAGTCAT 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 CTGATGTGGATTGCCAAAACTACTACAAAGAATGGCTTCCCAAGATTACAAACCAGTCAT 1173
Query 1061 GTTCCTCCTCATCCCTTTGATCCTACAACATGAGAGGaaaa-aaaaaCTCTATTAAGATT 1119
| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||
Sbjct 1174 GCTCCTCCTCATCCCTTTGATGCTACAACATGAGAG-AAAATAAAAACTCTATTAGGA-- 1230
Query 1120 TAAGAACTTACCCATTTTAGACCACAATTTGTGGTAGACCTATTATTATATCAGTATCGG 1179
|| ||||||||| | ||||||||||||||||||||||||||||||||||||| | |
Sbjct 1231 -AA----TTACCCATTGTGGACCACAATTTGTGGTAGACCTATTATTATATCAGTACCAG 1285
Query 1180 TTGTTTAGTTTTATATA-GTTTTGACTTGTTATGGTTATGAGCAGCAGAAT 1229
|| ||||||||| | || || ||||||| ||| ||| ||||||||| |||
Sbjct 1286 TTCTTTAGTTTTCT-TAAGTCTTGACTTACTATTGTTGTGAGCAGCAAAAT 1335
Score = 374 bits (202), Expect = 2e-102
Identities = 360/429 (84%), Gaps = 39/429 (9%)
Strand=Plus/Plus
Query 1217 TGAGCAGCAGAAT-GATATCGAG-ACGCCGACACATGTTGGAATATCAAGGAAACTTCTT 1274
||||||||| ||| ||||||||| || ||||| |||||| |||||||||| | |||||
Sbjct 1365 TGAGCAGCAAAATAGATATCGAGTCCG-CGACATATGTTGAAATATCAAGG--A-TTCTT 1420
Query 1275 GACAAGAAGCGATCAGTCAATTTG----TAATTTGTGCGTTTTAGAATTTAGTTACCGTA 1330
|||| ||||||||| || ||||| |||||||||| || |||||| ||||| ||||
Sbjct 1421 AACAA-AAGCGATCAATCCATTTGAATATAATTTGTGCATTAGAGAATTGAGTTAACGTA 1479
Query 1331 AACAAAGTTCGAGCGCTGGCGGCAGGACCTGATCAGATTGCAATAACATCATCATGTGTG 1390
|||||||||| |||||||||||||| ||||||| |||||| |||||||||||||||||
Sbjct 1480 AACAAAGTTCAAGCGCTGGCGGCAGAACCTGAT---ATTGCAGTAACATCATCATGTGTG 1536
Query 1391 CAAGTTGGAGATTAGTAGTCATGATCTTGCATATAATCCTTGTTTTATACTTCAAGTTAT 1450
||||| || |||||||| || | ||||||| |||||||||||||||||||||||| |||
Sbjct 1537 CAAGTGGGGGATTAGTAATCTTCATCTTGC--ATAATCCTTGTTTTATACTTCAAGCTAT 1594
Query 1451 GACCAATATATTTATTATTTATACAT-C----CG-A-A-T---TTTGCTCCCGTGAATTC 1499
|||| ||||||||||||||||||||| | || | | | ||||||||||||||||
Sbjct 1595 GACCTATATATTTATTATTTATACATCCGATTCGAATATTAAGTTTGCTCCCGTGAATTA 1654
Query 1500 GAAGGAAGAGTATATAAAATATGTCACGTGATAATTATTTTTCATCTTCACGTTTCTCAT 1559
|||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1655 GAAGGAAGAGTACAT--AATATGTCACGTGATAATTATTTTTCATCTTTACGTTTCTCAT 1712
Query 1560 TTTATGGGGTCTCATTCGACGACTTTCCAACTCGAACTAATTAATATGTT---AGTTATT 1616
|||| |||||||| |||||||||||| ||| |||| | | |||||| | |||||
Sbjct 1713 ---ATGGT-TCTCATTCAACGACTTTCCAAGTCGGACTA-T-A-TATGTTTTTAATTATT 1765
Query 1617 AATCATATA 1625
|||||||||
Sbjct 1766 AATCATATA 1774
Score = 108 bits (58), Expect = 2e-22
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 1616 TAATCATATAGGTGCATGCATATAAATGTAAATGCATTGTTGTTGTCTACTT-AATAACA 1674
||| |||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 1798 TAAACATATAGGTGCATGCATATAAATGTAAATGTATTGTTGTCGTCTACTTCAATAACA 1857
Query 1675 ACTCCATCAAT 1685
|||||||||||
Sbjct 1858 ACTCCATCAAT 1868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83282704155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5