BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493402

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14905.1 | Symbols:  | Galactose oxidase/kelch repeat superf...   346    3e-94


> AT4G14905.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr4:8526371-8528010 REVERSE LENGTH=1404
Length=1404

 Score =  346 bits (187),  Expect = 3e-94
 Identities = 254/286 (89%), Gaps = 5/286 (2%)
 Strand=Plus/Plus

Query  85   AACTTCAGGCGTTTAATCGCTTCGCCAGAGATCTACATCGAACGGTCAGTAATTCGCCTC  144
            ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |
Sbjct  191  AACTTCAGGCGTTTAATGGCTTCGCCGGAGATCTACATCGAACGGTCAGTAATTCGTCGC  250

Query  145  ACTGAACATATCCTCTATGTAGCAATTAGATCACAAGCTACAAAAACCCTTACCTGGTAC  204
            |||||| ||||||||||||| |||||||||||| |||||||||||||||||| |||||||
Sbjct  251  ACTGAAAATATCCTCTATGTTGCAATTAGATCAGAAGCTACAAAAACCCTTAGCTGGTAC  310

Query  205  ACACTCAATTTAAAACCCTTTGGAACAACGGATATTAGCCATAGATTAGTAGAG-TTCCA  263
            ||||||||| ||||||||||||||||||| || |||||||||||||||||   | |||||
Sbjct  311  ACACTCAATCTAAAACCCTTTGGAACAACAGAGATTAGCCATAGATTAGTTCCGGTTCCA  370

Query  264  TCATTCCCTTCAATTCCTGGATTTGGAACAACGATTATCGC-TGCCAGTTCTGAGA-TTG  321
            |||||||||||||||||||||| ||||||||| |||||| | | || ||||||| | || 
Sbjct  371  TCATTCCCTTCAATTCCTGGATATGGAACAACTATTATCTCGT-CCGGTTCTGAAACTT-  428

Query  322  ACGTCATTGGTGGATATATCAATGGAGAATTTGTCTCCACTTTGTC  367
            |||||||||||||||  ||  | |||||||| ||||| ||| ||||
Sbjct  429  ACGTCATTGGTGGATGCATTGACGGAGAATTAGTCTCTACTGTGTC  474


 Score =  292 bits (158),  Expect = 4e-78
 Identities = 193/209 (92%), Gaps = 6/209 (3%)
 Strand=Plus/Plus

Query  678   GCTTGAAGGTTGTACAGGTACAATTGTGAATCATGGTGGAAGACTTGCAATTCTATTTAA  737
             |||| || |||||||||||| ||| ||||||||||||||| ||||||||||||| |||||
Sbjct  922   GCTTCAAAGTTGTACAGGTAGAATGGTGAATCATGGTGGACGACTTGCAATTCTGTTTAA  981

Query  738   GAAGTCTCCAACAGAAATTTGGTGTACAGAGATTGCAATGGAGAGGGCAGAAGAAGGAGG  797
             |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct  982   GAAGTCTCCAACAGAAATTTGGCGTACAGAGATTGCAATAGAGAGGGCAGAAGAAGGAGG  1041

Query  798   ATGTATTAGTGGG--G----TGTGGTCTAATCATGTGCTTACTTTGACAGATTCCTTCAT  851
             || ||||||||||  |    ||||||||||||||||||||||||||||||||||||||||
Sbjct  1042  ATATATTAGTGGGAAGTTCTTGTGGTCTAATCATGTGCTTACTTTGACAGATTCCTTCAT  1101

Query  852   CATTGAACGAGCTCTAACTGTAACAGTTT  880
             |||||||||||||||| ||||||||||||
Sbjct  1102  CATTGAACGAGCTCTAGCTGTAACAGTTT  1130


 Score =  211 bits (114),  Expect = 1e-53
 Identities = 174/202 (86%), Gaps = 8/202 (4%)
 Strand=Plus/Plus

Query  478  GAGCAAGTGAACTGCTTTGTAATGAATGATAAGATTTATAGAATGGGTCAGAAGACTATT  537
            |||||| |||||| |||||| |||||||||||||| |||||||| |||||||| ||||| 
Sbjct  677  GAGCAAATGAACTTCTTTGTGATGAATGATAAGATCTATAGAATAGGTCAGAATACTATG  736

Query  538  TTTGTTTACGATCCGAAAAAGGGTAGATTCGAGGAAGACTTGACGTTG--AATGCATTAT  595
            |||||||||||||||||||||||||||||||||||||||||| |||||  || | |||||
Sbjct  737  TTTGTTTACGATCCGAAAAAGGGTAGATTCGAGGAAGACTTGGCGTTGGGAA-G-ATTAT  794

Query  596  GGATCAAGGGTTGTTGCCCAATTGATAACATGTTGTACGGTTTTTATCT-CGA-GAGCCA  653
            || |||| |  | |||||| || |||||| |||||||||| |||||| | | | || |||
Sbjct  795  GGTTCAACGAATCTTGCCCTATAGATAACGTGTTGTACGGCTTTTAT-TGC-ATGAACCA  852

Query  654  AATATTTGCGTATGATTTAGTT  675
            |||| ||||||| |||||||||
Sbjct  853  AATACTTGCGTACGATTTAGTT  874


 Score =  191 bits (103),  Expect = 1e-47
 Identities = 118/125 (94%), Gaps = 2/125 (2%)
 Strand=Plus/Plus

Query  355  TCTC-CACTTTGTCGCTTCCTTCCTAACATGAAGGAGCCTCGTAAATGCGTCGCCGTGGG  413
            |||| ||| |||||||||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct  491  TCTCACAC-TTGTCGCTTCCTCCCTAACATGAAGGAGCCACGTAAATGCGCCGCCGTGGG  549

Query  414  ATTGATCGACGGGAAATTATATGTTGTCAGAGGTTGTAACGCTCCGTCTTTGAATTGGGT  473
            |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct  550  ATTGATCGACGGGAAATTATATGTTGTCGGAGGTTGTAACGCTCCGTCTTTGAGTTGGGT  609

Query  474  CGAGG  478
            |||||
Sbjct  610  CGAGG  614



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 53563981515


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5