BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493404

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14890.1 | Symbols: FdC2 | 2Fe-2S ferredoxin-like superfamil...   736    0.0  


> AT4G14890.1 | Symbols: FdC2 | 2Fe-2S ferredoxin-like superfamily 
protein | chr4:8520832-8521456 FORWARD LENGTH=625
Length=625

 Score =  736 bits (398),  Expect = 0.0
 Identities = 467/501 (93%), Gaps = 1/501 (0%)
 Strand=Plus/Plus

Query  1    tctctgtctctctgtctctcatggcgactcttcctctcccgactcaaacttccacaatct  60
            |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  36   TCTCCGTCTCTCTGTCTCTCATGGCGACTCTTCCTCTCCCGACTCAAACTTCTACAATCT  95

Query  61   ctctccCTAAACCTTATCTTTCCAATTCCTTCTCCTTCCCACTCCGTAACGCAACATTCT  120
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct  96   CTCTCCCTAAACCTTATCTCTCCAATTCCTTCTCCTTCCCACTCCGTAACGCAACACTCT  155

Query  121  CCACAACACCAAATCGCCGGAACTTTCTCACCGCCGGAAGGATCGTAGCTCGGTCATATA  180
            | |||||| |||| |||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct  156  CAACAACAACAAACCGCCGGAACTTTCTCACCACCGGAAGGATCATAGCTCGGGCATATA  215

Query  181  AAGTGGTGGTGGAGCACGACGGAAAGACGACTGAATTGGAAGTCGAACCAGACGAGACGA  240
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  216  AAGTGGTGGTAGAGCACGACGGAAAGACGACTGAATTGGAAGTCGAACCAGACGAGACGA  275

Query  241  TTTTATCGAAGGCTCTTGAATCCGGCCTTGACGTTCCCTATGACTGTAACCTCGGCGTTT  300
            || |||| ||||||||||| || ||||||||||||||||| ||||| || ||||| ||||
Sbjct  276  TTCTATCTAAGGCTCTTGACTCTGGCCTTGACGTTCCCTACGACTGCAATCTCGGTGTTT  335

Query  301  GTATGACTTGTCCGGCGAAACTCGTGGCTGGAACGGTGGATCAGAGCGATGGGATGCTAA  360
            ||||||||||||| |||||||||||| | |||||||||||||| || | |||||||||||
Sbjct  336  GTATGACTTGTCCAGCGAAACTCGTGACCGGAACGGTGGATCAAAGTGGTGGGATGCTAA  395

Query  361  GTGAGGATGTGGTGGAACGTGGCTACGCGCTTCTATGTGCTTCGTATCCAACTTCTGATT  420
            |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  396  GTGATGATGTGGTTGAACGTGGCTACACGCTTCTATGTGCTTCGTATCCAACTTCTGATT  455

Query  421  GTCACATTAAGATGATCCCTGAGGAAGAGCTTTTGTCTCTTCAGCTTGCCACTGCCAACG  480
            |||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||
Sbjct  456  GTCACATTAAGATGATCCCTGAGGAAGAACTCTTGTCTCTCCAGCTCGCCACTGCCAACG  515

Query  481  ACTGATCCATCTTCTTGAttt  501
            ||| ||| |||||||||||||
Sbjct  516  ACTAATC-ATCTTCTTGATTT  535



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26875268645


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5