BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493405
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14880.1 | Symbols: OASA1, OLD3, CYTACS1 | O-acetylserine (t... 1971 0.0
AT3G22460.1 | Symbols: OASA2 | O-acetylserine (thiol) lyase (OA... 579 3e-164
> AT4G14880.1 | Symbols: OASA1, OLD3, CYTACS1 | O-acetylserine
(thiol) lyase (OAS-TL) isoform A1 | chr4:8517960-8520469 REVERSE
LENGTH=1369
Length=1369
Score = 1971 bits (1067), Expect = 0.0
Identities = 1159/1203 (96%), Gaps = 8/1203 (1%)
Strand=Plus/Plus
Query 1 TTTTCTTCAAAACGATTCGGGTCAAGGTTATTGACTTTCTCATTCAGCAGTGAAGCTTGA 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 92 TTTTCTTCAAAACGATTCGGGTCAAGGTTATTGACTTTCTCATT---CAGTGAAGCTTGA 148
Query 61 ATCATGGCCTCTAGAATTGCTAAAGATGTGACTGAATTGATTGGGAACACTCCATTGGTG 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ATCATGGCCTCGAGAATTGCTAAAGATGTGACTGAATTGATTGGGAACACTCCATTGGTG 208
Query 121 TATTTGAACAATGTTGCTGAAGGATGTGTTGGTCGTGTTGCTGCTAAGCTTGAGATGATG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 TATTTGAACAATGTTGCTGAAGGATGTGTTGGTCGTGTTGCTGCTAAGCTTGAGATGATG 268
Query 181 GAACCATGCTCTAGCGTTAAAGACAGGATTGGTTTCAGCATGATTTCTGATGCAGAAAAG 240
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 269 GAACCGTGCTCTAGCGTCAAAGACAGGATTGGTTTTAGCATGATTTCTGATGCAGAAAAG 328
Query 241 AAGGGTCTTATCAAACCAGGAGAGAGTGTGCTGATTGAGCCAACAAGTGGAAACACTGGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 AAGGGTCTTATCAAACCAGGAGAGAGTGTGCTGATTGAGCCAACAAGTGGAAACACTGGA 388
Query 301 GTTGGGTTAGCATTCACGGCGGCTGCCAAGGGCTACAAGCTTATTATTACCATGCCAGCT 360
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 389 GTTGGGTTAGCATTCACGGCAGCTGCCAAAGGCTACAAGCTTATTATTACAATGCCAGCT 448
Query 361 TCGATGAGTATTGAGAGAAGAATCATTCTCTTAGCTTTTGGAGTTGAGTTGGTTTTAACT 420
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 TCTATGAGTACTGAGAGAAGAATCATTCTCTTAGCTTTTGGAGTTGAGTTGGTTTTAACT 508
Query 421 GACCCAGCTAAGGGCATGAAAGGTGCTATCGCAAAGGCGGAAGAGATTTTGGCTAAAACG 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 509 GACCCAGCTAAGGGCATGAAAGGAGCTATCGCAAAGGCGGAAGAGATTTTGGCGAAAACA 568
Query 481 CCCAATGGTTACATGCTCCAACAGTTTGAGAACCCTGCTAACCCTAAGATCCACTATGAG 540
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 569 CCCAATGGTTACATGCTTCAGCAGTTTGAGAACCCTGCCAACCCTAAGATCCACTATGAG 628
Query 541 ACTACTGGACCTGAGATATGGAAAGGCACTGGTGGCAAAATTGATGGCTTTGTTTCTGGG 600
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 629 ACTACGGGACCTGAGATATGGAAAGGCACTGGTGGCAAAATCGATGGCTTTGTTTCTGGG 688
Query 601 ATTGGTACTGGTGGTACCATTACAGGTGCTGGGAAGTATCTTAAAGAACAGAACGCAAAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 ATTGGTACTGGTGGTACCATTACAGGTGCTGGGAAGTATCTTAAAGAACAGAACGCAAAC 748
Query 661 GTAAAGCTGTATGGAGTGGAGCCAGTTGAAAGTGCTATTCTATCCGGTGGGAAGCCAGGC 720
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 GTCAAGCTGTATGGAGTGGAGCCAGTTGAAAGTGCTATTCTATCCGGTGGGAAGCCAGGT 808
Query 721 CCTCACAAGATTCAAGGGATAGGAGCTGGTTTTATACCAAGTGTATTGAATGTTGATCTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 CCTCACAAGATTCAAGGGATAGGAGCTGGTTTTATACCAAGTGTATTGAATGTTGATCTT 868
Query 781 ATTGATGAAGTTGTTCAGGTTTCAAGTGATGAATCCATTGACATGGCAAGGCAGCTTGCT 840
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 ATTGACGAAGTTGTTCAGGTTTCAAGTGATGAATCCATTGACATGGCAAGGCAGCTTGCT 928
Query 841 CTTAAAGAAGGTCTTCTTGTGGGAATATCATCTGGTGCAGCAGCTGCTGCAGCAATCAAA 900
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 929 CTTAAAGAAGGTCTTCTTGTGGGAATATCATCCGGTGCAGCAGCTGCTGCAGCAATTAAA 988
Query 901 CTTGCACAGAGGCCAGAAAACGCCGGGAAGCTTTTTGTGGCGATATTCCCGAGTTTCGGG 960
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 989 CTTGCACAGAGGCCAGAAAACGCTGGGAAGCTATTTGTGGCGATATTCCCGAGTTTCGGG 1048
Query 961 GAGAGGTATCTATCGACTGTACTATTCGATGCGACAAGGAAAGAAGCGGAATCCATGACC 1020
|||||||||||||| || ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1049 GAGAGGTATCTATCAACGGTACTTTTCGATGCGACAAGGAAAGAAGCGGAAGCCATGACC 1108
Query 1021 TTTGAGGCTTGAAACATTCTCCATTTCTTCTTAAGAGACGCCGAAATAAAAGAGATGTTT 1080
|| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1109 TTCGAGGCTTGAA-CATTCTCCATTTCTTCTTAAGAGACGCCAAAATAAAAGAGATGTTC 1167
Query 1081 AGTTTCTCCTATAGAGACTCTTCATCTTTAGCTACATTGCGTCTTTGCTTCCATATGTAT 1140
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1168 AGTTTCTCCTATAGAGACTCTTCATCTTTAGTTACATTGCGTCTTTGCTTCCATCTGTAT 1227
Query 1141 CTTCTTCTTTTGTGTGCCAATAAAAAATCAAACTAGATTTTCTCTATTTCGTTTGTGAAC 1200
||||| ||| |||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 1228 CTTCT-CTT--GTGTGCCAATAAAAG-TCAAACTAGATTTTCTCTGTTTCTTTTGTGAAC 1283
Query 1201 CAC 1203
|||
Sbjct 1284 CAC 1286
> AT3G22460.1 | Symbols: OASA2 | O-acetylserine (thiol) lyase (OAS-TL)
isoform A2 | chr3:7963537-7965907 FORWARD LENGTH=1157
Length=1157
Score = 579 bits (313), Expect = 3e-164
Identities = 446/510 (87%), Gaps = 9/510 (2%)
Strand=Plus/Plus
Query 62 TCA-TGGCCT-CTAGAATTGCTAAAGATGTGACTGAATTGATTGGGAACACTCCATTGGT 119
||| ||| || ||| ||| ||||||||||| |||||| | || |||||||||||||| ||
Sbjct 90 TCAGTGG-CTCCTAAAATCGCTAAAGATGTAACTGAACTAATAGGGAACACTCCATTAGT 148
Query 120 GTATTTGAACAATGTTGCTGAAGGA-TGTGTTGGTCGTGTTGCTGCTAAGCTTGAGATGA 178
|||| | ||||| || ||| || || |||||||||| |||||||||||||||||||||||
Sbjct 149 GTATCTAAACAAAGTAGCT-AAAGATTGTGTTGGTCATGTTGCTGCTAAGCTTGAGATGA 207
Query 179 TGGAACCATGCTCTAGCGTTAAAGACAGGATTGGTT-TCAGCATGATTTCTGATGCAGAA 237
|||||||||| |||||||| |||||||||||||||| | || |||||| |||||||||||
Sbjct 208 TGGAACCATGTTCTAGCGTCAAAGACAGGATTGGTTAT-AGTATGATTGCTGATGCAGAA 266
Query 238 AAGAAGGGTCTTATCAAACCAGGAGAGAGTGTGCTGATTGAGCCAACAAGTGGAAACACT 297
|| || ||||| ||||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct 267 GCTAAAGGACTTATTAAACCGGGAGAGAGTGTGTTGATTGAGCCAACAAGTGGGAACACT 326
Query 298 GGAGTTGGGTTAGCATTCACGGCGGCTGCCAAGGGCTACAAGCTTATTATTACCATGCCA 357
|||||||| |||||||| || || ||||| |||||||| |||||| |||| || ||||||
Sbjct 327 GGAGTTGGTTTAGCATTTACTGCAGCTGCAAAGGGCTATAAGCTTGTTATAACAATGCCA 386
Query 358 GCTTCGATGAGTATTGAGAGAAGAATCATTCTCTTAGCTTTTGGAGTTGAGTTGGTT-TT 416
||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 387 GCTTCAATGAGTATAGAGAGAAGAATCATTCTCTTAGCTTTTGGAGCTGAGTTGATTCTT 446
Query 417 AACTGACCCAGCTAAGGGCATGAAAGGTGCTATCGCAAAGGCGGAAGAGATTTTGGCTAA 476
| |||| || ||||| || |||||||||||| | ||||||||||| ||||||||||| ||
Sbjct 447 A-CTGATCCGGCTAAAGGTATGAAAGGTGCTGTTGCAAAGGCGGAGGAGATTTTGGCGAA 505
Query 477 AACGCCCAATGGTTACATGCTCCAACAGTTTGAGAACCCTGCTAACCCTAAGATCCACTA 536
||| || |||||||| ||||| |||||||||||||| |||||||| || |||||||| ||
Sbjct 506 AACACCTAATGGTTATATGCTTCAACAGTTTGAGAATCCTGCTAATCCAAAGATCCATTA 565
Query 537 TGAGACTACTGGACCTGAGATATGGAAAGG 566
||||||||||||||||||||||||||||||
Sbjct 566 TGAGACTACTGGACCTGAGATATGGAAAGG 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5