BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493409
Length=2151
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14850.1 | Symbols: LOI1, MEF11 | Pentatricopeptide repeat (... 3229 0.0
> AT4G14850.1 | Symbols: LOI1, MEF11 | Pentatricopeptide repeat
(PPR) superfamily protein | chr4:8513859-8516360 FORWARD LENGTH=2228
Length=2228
Score = 3229 bits (1748), Expect = 0.0
Identities = 1992/2112 (94%), Gaps = 8/2112 (0%)
Strand=Plus/Plus
Query 29 CTTCAAAGCTATGACCTTTCCGATCTCCGGCGTTAGTTATGACG-CTCCTAACCGCGGAC 87
||| ||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||
Sbjct 51 CTTGAAAGCTATGACCTTTCCGATCACCGGCGTTAGTTATGA-GCCTCCTCTCCGCGGAC 109
Query 88 GCACTTGGGTTACTTCTCAAGAATGCAATCTCCACGAGCTCCATGCGTTTGGGTCGCGTC 147
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 110 GCACTTGGGTTACTTCTCAAGAATGCAATCTCCGCGAGTTCCATGCGTTTGGGTCGCGTC 169
Query 148 GTTCACGCAAGAATCGTCAAAACCCTCGATTCACCACCACCTCCGTTTCTCGCAAACTAT 207
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 170 GTTCACGCAAGAATCGTCAAAACCCTCGATTCACCACCACCTCCGTTTCTCGCGAACTAT 229
Query 208 CTCATCAATATGTACTCAAAACTCGACCATCCTGAATCAGCCCGACTCGTTCTCCGACTC 267
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 230 CTCATCAACATGTACTCAAAACTCGACCATCCGGAATCAGCCCGACTCGTTCTCCGACTC 289
Query 268 ACTCCTGCGCGAAACGTCGTCTCTTGGACCTCACTTGTCTCCGGACTTGCTCAGAACGGT 327
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 290 ACTCCTGCACGAAACGTCGTCTCTTGGACTTCACTTATCTCCGGACTTGCTCAGAACGGT 349
Query 328 CATTTCTCCACCGCTTTGTTTGAATTCTTTGAAATGCGACGAGAAGGTGTTGCCCCAAAT 387
|||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||
Sbjct 350 CATTTCTCCACCGCTTTGGTTGAATTCTTCGAGATGCGACGAGAAGGTGTTGTTCCAAAT 409
Query 388 GACTTCACTTTCCCTTGTGCTTTTAAAGCTGTGGCTTCTCTGCGTTTACCTGTTACTGGG 447
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 410 GACTTCACTTTCCCTTGTGCTTTTAAAGCTGTGGCTTCTCTGCGTTTACCCGTTACTGGG 469
Query 448 AAGCAGATTCATGCGCTTGCTGTGAAATGTGGAAGAATACTTGATGTGTTTGTTGGGTGT 507
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 470 AAGCAGATTCATGCGCTTGCTGTGAAGTGTGGTAGGATACTTGATGTGTTTGTTGGGTGT 529
Query 508 AGTGCTTTTGATATGTATTGTAAGACTAGGCTTAGGGATGATGCACGGAAGTTGTTCGAT 567
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 530 AGTGCTTTTGATATGTATTGCAAAACTAGGCTTAGAGATGATGCACGGAAGTTGTTCGAT 589
Query 568 GAAATTCCTGAGAGGAACCTTGAAACTTGGAATGCTTATATATCTAACTCTGTGACTGAT 627
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 590 GAAATTCCTGAGAGGAACCTTGAAACTTGGAATGCTTTTATATCTAACTCTGTGACTGAT 649
Query 628 GGAAGGCCAAAGGAAGCTATTGAAGCGTTTATTGAGTTTAGAAGGATTGGTGGGCTA-CC 686
|||||||| | |||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 650 GGAAGGCCTAGGGAAGCTATTGAAGCGTTTATTGAGTTTAGAAGGATTGATGGGC-ACCC 708
Query 687 GAATTCGATAACTTTTTGTGGTTTTCTTAATGCTTGTTCGGATGGGTTACTTTTGGATTT 746
|||||||||||||||||||| ||| |||||||||||||||||| |||||| ||| || |
Sbjct 709 GAATTCGATAACTTTTTGTGCTTTCCTTAATGCTTGTTCGGATTGGTTACACTTGAATCT 768
Query 747 AGGAATGCAAATGCATGGGCTTGTGTTCCGAAGTGGGTTTGATACAGACGTTTCAGTGTA 806
||||||||| | || ||||||||||| ||||||||||||||||||||||| || || |
Sbjct 769 AGGAATGCAGTTACACGGGCTTGTGTTACGAAGTGGGTTTGATACAGACGTCTCTGTTTG 828
Query 807 CAATGGGTTGATCGATTTCTATGGAAAGTGTAAGCAGATTCGTAGCAGTGAGATTATCTT 866
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 829 CAATGGGTTGATTGATTTCTATGGAAAGTGTAAGCAGATACGTAGCAGTGAGATTATCTT 888
Query 867 CGCTGAAATGGGAA-TAAAAAATGCTGTTTCTTGGTGTTCATTGGTTGCTGCATATGTGC 925
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TACTGAAATGGGAACT-AAAAATGCTGTTTCTTGGTGTTCATTGGTTGCTGCATATGTGC 947
Query 926 AGAATCATGAGGATGAGAAGGCGTCTGTATTATATCTACGTTCAAGGAAGGAAATTGTTG 985
||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 948 AGAATCATGAGGATGAGAAGGCGTCTGTATTATATTTACGCTCAAGGAAGGATATTGTTG 1007
Query 986 AGACCTCTGATTTTATGATTTCAAGTGTTCTGAGTGCGTGTGCTGGTATGGCAGGTCTTG 1045
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1008 AGACCTCTGATTTTATGATATCAAGTGTTCTGAGTGCGTGTGCTGGTATGGCTGGTCTTG 1067
Query 1046 AGTTAGGAAGATCGATACATGCTCACGCTGTGAAGGCGTGTGTTGAAAGGAATATTTTTG 1105
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1068 AGTTGGGAAGATCGATACATGCTCACGCTGTGAAGGCGTGTGTTGAAAGGACTATATTTG 1127
Query 1106 TTGGAAGTGCCCTCGTTGACATGTATGGAAAATGCGGATGCATAGAAGATTCAGAACAAG 1165
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1128 TTGGAAGTGCCCTCGTTGACATGTATGGAAAATGTGGATGTATAGAAGATTCAGAACAAG 1187
Query 1166 CGTTTGATGAGATGCCTGAAAAGAACTTAGTAACTCTGAATTCATTGATCGGAGGATATG 1225
||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct 1188 CGTTTGATGAGATGCCTGAGAAGAACTTAGTGACTCGGAATTCATTGATCGGAGGATATG 1247
Query 1226 CTCATCAGGGTCAGGTTGACATGGCATTGGCGTTATTTGAAGACATGGCACCACGTGGAT 1285
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1248 CTCATCAGGGTCAGGTTGATATGGCATTGGCTTTATTTGAAGAAATGGCACCACGTGGAT 1307
Query 1286 GCGGTCCGGCTCCAAACTATATGACGTATGTGTCCTTGCTTTCCGCTTGTAGTAGAGCAG 1345
| ||||| ||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1308 GTGGTCCAACTCCAAATTATATGACTTTTGTGTCCTTGCTTTCCGCTTGTAGTAGAGCAG 1367
Query 1346 GGGCTGTGGAAAATGGTATGAAAATATTTGATTCGATGAAGAGTACTTATGGCATTGAGC 1405
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1368 GGGCTGTGGAAAATGGTATGAAGATATTTGATTCGATGAGGAGTACTTATGGCATTGAGC 1427
Query 1406 CAGGGGCTGAGCATTATTCCTGCATCGTGGACATGCTAGGGCGAGCAGGAATGGTAGAAC 1465
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1428 CAGGGGCTGAGCATTATTCATGCATCGTGGACATGCTAGGGCGAGCGGGAATGGTAGAAC 1487
Query 1466 AGGCTTTTGAATTCATTaaa-aaaaTGCCAATTAAACCGACAATTTCGGTTTGGGGTGCT 1524
||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1488 GGGCTTATGAATTCA-TAAAGAAAATGCCAATTCAACCGACAATTTCGGTTTGGGGTGCT 1546
Query 1525 CTTCAGAATGCTTGTAGGATGCATGGTAAGCCACACCTCGGAATACTAGCAGCTGAGAAC 1584
||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 1547 CTTCAGAATGCTTGTAGGATGCATGGTAAGCCACAGCTGGGATTACTAGCAGCTGAGAAC 1606
Query 1585 CTTTTCAAACTTGACCCTAAAGATTCAGGCAACCACGTTCTGCTTTCGAATACGTTTGCA 1644
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1607 CTTTTCAAACTCGACCCTAAGGATTCAGGCAACCACGTTCTGCTTTCCAATACGTTTGCA 1666
Query 1645 GCGGCTGGGAGGTGGGCGGAAGCCAACACCGTAAGAGAGGAGATGAAAGGCGTAGGAATC 1704
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1667 GCGGCTGGGAGGTGGGCGGAAGCCAACACCGTAAGAGAGGAGCTGAAAGGCGTAGGGATC 1726
Query 1705 AAGAAAGGAGCCGGGTACAGTTGGATCACAGTGAAGAACCAAGTCCATGCCTTCCAAGCG 1764
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1727 AAGAAAGGAGCCGGATACAGTTGGATCACAGTGAAGAACCAAGTCCATGCCTTTCAAGCC 1786
Query 1765 AAGGACAGATCCCACAAAATGAACAAAGAGATTCAGACAATGCTGACCAAGCTAAGGAAC 1824
|||||||||||||||| | |||||||||| ||||| |||| |||| ||||||||||||||
Sbjct 1787 AAGGACAGATCCCACATACTGAACAAAGAAATTCAAACAACGCTGGCCAAGCTAAGGAAC 1846
Query 1825 AAAATGGGGGCTGCAGGGTACATGCCCGACCTGAAACTCTCCCTTTACGATCTGGAAGAA 1884
|||||| ||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 1847 GAAATGGAAGCTGCAGGGTACAAACCCGACCTGAAACTCTCGCTTTACGATCTGGAGGAA 1906
Query 1885 GAAGAAAAAGCAGCAGAAGTCTCGCACCACAGCGAAAAACTAGCTCTAGCATTTGGCTTG 1944
|||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||
Sbjct 1907 GAAGAAAAAGCAGCAGAAGTCTCGCACCACAGTGAGAAACTGGCTCTAGCATTTGGATTG 1966
Query 1945 GTGGCTTTACCACTCGGTGTCCCAATCAGAATCACCAAGAACCTTAGAATCTGTGGAGAT 2004
| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1967 TTATCTTTACCACTCAGTGTCCCAATCAGAATCACCAAGAACCTTAGAATCTGCGGAGAT 2026
Query 2005 TGCCACAGCTTCTTCAAGTTTGTCTCAGGGAGTGTTAAAAGAGAGATCATTGTGAGAGAC 2064
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 2027 TGCCACAGCTTCTTCAAGTTTGTCTCTGGGAGTGTTAAACGAGAGATCATTGTGAGAGAC 2086
Query 2065 AATAACCGGTTTCATCGGTTTAAAGATGGGATATGTTCTTGTAAGGATTATTGGTAATCT 2124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2087 AATAACCGGTTTCATCGGTTTAAAGATGGGATATGTTCTTGTAAGGATTATTGGTAATCT 2146
Query 2125 TTATTAGTTTAG 2136
||||||||||||
Sbjct 2147 TTATTAGTTTAG 2158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106676158125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5