BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493410
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14840.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2200 0.0
AT4G14830.1 | Symbols: HSP1 | unknown protein; BEST Arabidopsis... 501 9e-141
AT3G22520.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 353 3e-96
> AT4G14840.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G22520.1);
Has 1681 Blast hits to 1532 proteins in 283 species: Archae
- 19; Bacteria - 179; Metazoa - 579; Fungi - 131; Plants -
223; Viruses - 5; Other Eukaryotes - 545 (source: NCBI BLink).
| chr4:8511487-8513727 REVERSE LENGTH=1827
Length=1827
Score = 2200 bits (1191), Expect = 0.0
Identities = 1572/1750 (90%), Gaps = 49/1750 (3%)
Strand=Plus/Plus
Query 1 TAAGATCGGCTACTCTGTTCTTGACTCTCCAAAGAATTAGGGTTTTTGGTCTGCTTCGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TAAGATCGGCTACTCTGTTCTTGACTCTCCAAAGAATTAGGGTTTTTGGTCTGCTTCGAT 61
Query 61 GGATATGGATCAAGAGATAGGTCAAAATTCTCCTAGATTTGATGGTGAATC---AGTGAC 117
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
Sbjct 62 GGATATGGATCAAGAGATAGGTCAAAATTCTCCTGGATTTGATGGTGAATCAGTAGTGTC 121
Query 118 AATGAGTAAT--AA-CAAGGAGACTGGACCAGTCATGGTTGAGAAAGACGACTT-TCGGG 173
|||||||||| || ||||||||||| ||||||| ||||||||| ||| | || |||||
Sbjct 122 AATGAGTAATAGAAGCAAGGAGACTGAACCAGTCCCGGTTGAGAATGACTA-TTATCGGG 180
Query 174 AAAACGGATTCAATAGAGAAGATGATGGTGATCATGTGAAGGTTAATGGCAATGGAAGCT 233
||||||||||||| || || | |||||||||| |||||||||||||||| | ||||||
Sbjct 181 AAAACGGATTCAACAGTGATGGTGATGGTGATGATGTGAAGGTTAATGGTGACAGAAGCT 240
Query 234 CCTTCACTCCTGGGGAAACTGATTTGAATCAACTCCCGGCGATTCCGCCGGTTTCTAGTG 293
|| | | | |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 241 CC-T---T-C-------ACTGATTTGAATCAACTCCCGGCGATTCCGCCAGCTTCTAGTG 288
Query 294 GTCAAGGTTTGCCGTTTGCACCTGTTGATTGCCCGAGCCCTGGTGATGTTTGGACTTGGA 353
||||||||||||||||||||||||| |||| ||||||||| || ||||||||||||||||
Sbjct 289 GTCAAGGTTTGCCGTTTGCACCTGTCGATTTCCCGAGCCCCGGCGATGTTTGGACTTGGA 348
Query 354 GAGTTGGGAGGAGAGTGACTAATAACGGGATCCATAAGGATCGGTTTCTCATTCTCCCGG 413
|||||||||||||||||| |||| |||| ||||||||||||| || |||||||||||||
Sbjct 349 GAGTTGGGAGGAGAGTGAATAATGCCGGGTTCCATAAGGATCGCTTACTCATTCTCCCGG 408
Query 414 AAAGGCTTAAGGGCAAGAATGCACCCAAATCTTTTGCAGGCAAAAACACTCTTTGGCGTT 473
| ||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||
Sbjct 409 AGAGGCTTAAGGGCAAGAATGTACCCAAATCTTTTGCAAGCAAAAACACTCTTTCGCGTT 468
Query 474 ATCTCGAAACTAACTTCCCTGATATGGATGCTGATGCATTCTTTGCATCTTTTAGCTGGA 533
|||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 469 ATCTCGAAACTAGTTTCCCTGATATGGATGCTAATGCATTCTTTGCATCTTTTACCTGGA 528
Query 534 ATATCCCGGCTTTGTTTCAGCCCGCA-AATAAAGTTGATGCTGCGTCTCTGTTTGAAGAG 592
| || ||||||||||||||||| ||| || | ||||||||||||||||||||||||||||
Sbjct 529 ACATTCCGGCTTTGTTTCAGCCTGCAGAA-AGAGTTGATGCTGCGTCTCTGTTTGAAGAG 587
Query 593 ACATCCAAAGAAGGACAGAATCAAGATGAGGATGCCGAGGATGTaaaaaaaGAAGGATCA 652
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 588 ACATCCAAAGAAGGACAGAATCAAGATGAGGATGCTGAGGATGTAAAAAAAGAAGGATCA 647
Query 653 ACTTCGCGTTACAGCCAGAGGAAGAGGAAAGC-GGTGCAGATACGGGCTAATGAACCTGT 711
||||||||||||||||||||||||| |||| | ||||||||||| | ||||||||||
Sbjct 648 ACTTCGCGTTACAGCCAGAGGAAGA-GAAAACAGGTGCAGATACAGACTAATGAACC--- 703
Query 712 TGAAGAAAAGCCTAAAGC-AAC-TCCGCGAGCTAGCAACAG-GA-AA-AAGA-AAGC--C 763
| ||| || || ||| | | | | || || |||| | || || | ||| |
Sbjct 704 TAAAGCAACTCCGCGAGCTAGCAACAG-GAAAAAG--ACAGCCACAACAACACCAGCTGC 760
Query 764 -AAACATAAGTCATCTCGGGAATCTTCCTCGAGACGCTT-CACAAGACAGCAACAAGGTG 821
||||||||||| |||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 761 TGAACATAAGTCAGCTCGGGAATCTTCCTCGAAACG-TTACACAAGACAGCAACAAGGTG 819
Query 822 ATGTGGTTGACTTGACGGAAGAAAATAAGGAATCAGATGCAAATAAAGGCAGCAAGAGAA 881
||||| |||||||||| |||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 820 ATGTGTTTGACTTGACTGAAGAAAACAAGGAATCAGATGCAAAGAAAGGCAGCAAGAGGA 879
Query 882 TGAAGAAACGCAGAGGTAACTATGCAGAC---GAAGAAGAAG-A-A-GCTTTGGTTCCTC 935
||||||||||||||||||||||||||||| |||||||||| | | ||||| ||||| |
Sbjct 880 TGAAGAAACGCAGAGGTAACTATGCAGACGAAGAAGAAGAAGAAGAGGCTTTTGTTCCGC 939
Query 936 ATATCTATGTTTCTCCTATGAACGGTGTCCTTTCGGTCTCCCACCCTCTTGTGGATATAA 995
|||||||||||||| |||||||||||||| || | ||||| ||||||| |||||||||||
Sbjct 940 ATATCTATGTTTCTTCTATGAACGGTGTCATTGCAGTCTCTCACCCTCCTGTGGATATAA 999
Query 996 ACCCAGAAGAGTTTGACAGTTATCTGAACTCTCTAGAGAACCTTCTTCAAG-AACAACCT 1054
|||||||||||||||||||||||||||||||||||||||| |||||||| | |||| |||
Sbjct 1000 ACCCAGAAGAGTTTGACAGTTATCTGAACTCTCTAGAGAATCTTCTTCA-GCAACAGCCT 1058
Query 1055 TCAGAAGCGGGACAAGAGTCTTCATCATCTCTTCCCGTTAGTGCAAGCTCGCCAATGAGG 1114
|||||||| ||||| |||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct 1059 TCAGAAGCAGGACAGGAGTCTTCATCATCACTTCCCGTTAGTGCAAGCTCTCCAGTGAGA 1118
Query 1115 GAACACGAATGGGCAGAAGCTCGGATGAAGCTTTCATCGCTTCTGGAGAAAGATTTCTCT 1174
|| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1119 GATTACGAATGGACAGAAGCTCGAATGAAGCTTTCATCGCTTCTGGAGAAAGATTTCTCT 1178
Query 1175 TCCTTGTTCATATCTAATGAAGTTGCGGAGATGGCAAGCTTGGCAGCTAAACTGAGGCTA 1234
||||||||||| |||||||||| | |||||||||||||||||||||||||||| | | |
Sbjct 1179 TCCTTGTTCATGTCTAATGAAGCTACGGAGATGGCAAGCTTGGCAGCTAAACTCAAGAAA 1238
Query 1235 GATCCAAGCCTTTCAGCTGAAGAAATAGTGAGATTGAAGCTTATCGAAGAAATTCCAACT 1294
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1239 GATCCAAGCCTATCAGCTGAAGAAATAGTGAGGTTGAAGCTAATCGAAGAAATTCCAACT 1298
Query 1295 TTTAGCGAAGTTTTTCAAGAGAACAAAAGTGTGATAGAAGAAGCAGATAGGTTCTTCTCC 1354
|| ||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1299 TTCAGCGAAGTTTTTCAAGAGAACCAAAGCATGATAGTAGAAGCAGATAGGTTCTTCTCC 1358
Query 1355 GCTCTCGAGCTTAACAAATCGAAAGTCGCATCTCTCAAGTACGAATACAGCGACTTAAAG 1414
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1359 GCTCTCGAGCTTAACAAAGCGAAGGTCGCATCTCTCAAGTACGAATACAGCGACTTAAAG 1418
Query 1415 GACAAACTAGGCAATATCCAGACGGAAGTCGATACAAACACAGAGACAATCCGTCAAATT 1474
||||| |||||||||||||| ||||||||||||| |||| ||||||||||||||||||||
Sbjct 1419 GACAAGCTAGGCAATATCCAAACGGAAGTCGATAGAAACTCAGAGACAATCCGTCAAATT 1478
Query 1475 GACGAGCAAATCGCTCAGCTTCAAGCTAGACGGACCGAGCTTACCCACTGCATTAGTAAC 1534
|||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||||
Sbjct 1479 GACGAGCAAATCGCTCAGCTTCAAGCTAAACGAACCGAGCTTACCCGCTGCATCAGTAAC 1538
Query 1535 AAGGAGAAAGAGAAGGTTGATCTAAGCTACGGTCAGAAAATGGTAGCGAACTCGATCCCG 1594
|||| |||||||||||||||||||| || |||||||| |||||||||||||| |||||
Sbjct 1539 AAGGGGAAAGAGAAGGTTGATCTAATCTTTGGTCAGAAGATGGTAGCGAACTCAATCCCT 1598
Query 1595 AAAGTGGTACAAGAAGTTCAAGCAGTTAACTCGAAGAAACCCGATTGGGAAATGAAGAAA 1654
|||||||| |||||||||||||||| ||||| ||||||||| || |||||||||||||||
Sbjct 1599 AAAGTGGTTCAAGAAGTTCAAGCAGCTAACTTGAAGAAACCTGAATGGGAAATGAAGAAA 1658
Query 1655 GACAATGCTCTTAAACGCGAAGCAGAGATTCTCAATAAATTTGCCCCACTCAAAGGATTT 1714
||||||||||||||||| ||| ||||||| ||||||||||||||||| ||||||||||||
Sbjct 1659 GACAATGCTCTTAAACGTGAATCAGAGATCCTCAATAAATTTGCCCCTCTCAAAGGATTT 1718
Query 1715 TATCTCTAAA 1724
||||||||||
Sbjct 1719 TATCTCTAAA 1728
> AT4G14830.1 | Symbols: HSP1 | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G22530.1);
Has 77 Blast hits to 77 proteins in 12 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8510908-8511928
FORWARD LENGTH=1021
Length=1021
Score = 501 bits (271), Expect = 9e-141
Identities = 319/343 (93%), Gaps = 0/343 (0%)
Strand=Plus/Minus
Query 1382 GCATCTCTCAAGTACGAATACAGCGACTTAAAGGACAAACTAGGCAATATCCAGACGGAA 1441
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1021 GCATCTCTCAAGTACGAATACAGCGACTTAAAGGACAAGCTAGGCAATATCCAAACGGAA 962
Query 1442 GTCGATACAAACACAGAGACAATCCGTCAAATTGACGAGCAAATCGCTCAGCTTCAAGCT 1501
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTCGATAGAAACTCAGAGACAATCCGTCAAATTGACGAGCAAATCGCTCAGCTTCAAGCT 902
Query 1502 AGACGGACCGAGCTTACCCACTGCATTAGTAACAAGGAGAAAGAGAAGGTTGATCTAAGC 1561
| ||| ||||||||||||| |||||| |||||||||| |||||||||||||||||||| |
Sbjct 901 AAACGAACCGAGCTTACCCGCTGCATCAGTAACAAGGGGAAAGAGAAGGTTGATCTAATC 842
Query 1562 TACGGTCAGAAAATGGTAGCGAACTCGATCCCGAAAGTGGTACAAGAAGTTCAAGCAGTT 1621
| |||||||| |||||||||||||| ||||| |||||||| |||||||||||||||| |
Sbjct 841 TTTGGTCAGAAGATGGTAGCGAACTCAATCCCTAAAGTGGTTCAAGAAGTTCAAGCAGCT 782
Query 1622 AACTCGAAGAAACCCGATTGGGAAATGAAGAAAGACAATGCTCTTAAACGCGAAGCAGAG 1681
|||| ||||||||| || |||||||||||||||||||||||||||||||| ||| |||||
Sbjct 781 AACTTGAAGAAACCTGAATGGGAAATGAAGAAAGACAATGCTCTTAAACGTGAATCAGAG 722
Query 1682 ATTCTCAATAAATTTGCCCCACTCAAAGGATTTTATCTCTAAA 1724
|| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 721 ATCCTCAATAAATTTGCCCCTCTCAAAGGATTTTATCTCTAAA 679
> AT3G22520.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast stroma, chloroplast,
chloroplast envelope; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G14840.1);
Has 717 Blast hits to 703 proteins in 179 species: Archae -
14; Bacteria - 134; Metazoa - 141; Fungi - 74; Plants - 209;
Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).
| chr3:7974762-7977590 FORWARD LENGTH=2070
Length=2070
Score = 353 bits (191), Expect = 3e-96
Identities = 432/545 (79%), Gaps = 29/545 (5%)
Strand=Plus/Plus
Query 236 TTCACTCCTGGGGAAACTGATTTGAATCAACTCCCGGCGATTCCGCCGGTTTCTAGTGGT 295
||||||| ||||||||||||| | |||||||| || |||||||| |||||||| | ||||
Sbjct 357 TTCACTCATGGGGAAACTGATCTCAATCAACTTCCTGCGATTCCTCCGGTTTCAACTGGT 416
Query 296 CAAGGTTTGCCGTTTGCACCTGTTGATTGCCCGAGCCCTGGTGATGTTTGGACTTGGAGA 355
||||||||||||| ||| ||||||||||| || |||||||||||||| ||||||||||||
Sbjct 417 CAAGGTTTGCCGTATGCCCCTGTTGATTGGCCAAGCCCTGGTGATGTATGGACTTGGAGA 476
Query 356 GTTGGGAGGAGAGTGACTAATAACGGG-ATCCATAAGGATCGGTTTCTCATTCTCCCGGA 414
|||||||||||||||||| || ||| ||| || ||||| ||||||| |||||||| |
Sbjct 477 GTTGGGAGGAGAGTGACTGCTATGGGGTATC-ATCAGGATAGGTTTCTTATTCTCCCTCA 535
Query 415 AAGGCTTAAGGGCAAGAATGCACCCAAA-TCTTTTGCAGGCAAAAAC-ACTCTTTGG-CG 471
||||||| || ||| ||| |||||| ||||| ||| ||||| | | ||| | ||
Sbjct 536 AAGGCTTCAGCAAAAGCATGT-CCCAAAGTCTTTCGCAAGCAAACCCCAA-CTT-GCTCG 592
Query 472 TTATCTCGAAACTAACTTCCCTGATATGGATGCTGATGCATTCTTTGCATCTTTTAGCTG 531
|||||||||| | | ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 593 TTATCTCGAATCGGATTTCCCTGGCATGGATGCTGATGCATTCTTTGCTTCTTTTAGCTG 652
Query 532 GAATATCCCGGCTTTGTTTCAGCCCGCAAATAAAGTTGATGCTGCGTCTCTGTTTGAAGA 591
||| | || ||| | || ||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 653 GAAGGTTCCAGCTCTCTTCCAGCCTGCAAATAAAGTTGATGCTGCGTCTCTTTTTGAGGA 712
Query 592 GACATCCAAAG-AAGGACAGAATCAAGATG---AGGATGCCGAGGATG-TaaaaaaaG-A 645
|||| || ||| ||| ||||| | | | || || ||| ||| ||| | | | | |
Sbjct 713 GACA-CCGAAGGAAGTACAGACTGAGGTTGGCCAGAATGATGAGAATGCTCAGGATGGGA 771
Query 646 A-GGATCAACTTCGCGTTACAGCCAGAGGAAGAGGAAAGCGG-TGCAGAT---ACGGGCT 700
| ||| || ||| || |||||||| |||||||| ||||| ||| || || ||
Sbjct 772 AAGGA--AA-TTCTCGATACAGCCAAAGGAAGAG-AAAGCCAATGCCGACGCCACAAACT 827
Query 701 AATGAACCTGTTGAAGA-AAAGCCTAAAGCAACTCCGCGAGCTAGCA--A-CAGGAAAAA 756
||||||||||||||| ||| || ||| ||||||| |||| ||||| | || ||| ||
Sbjct 828 TATGAACCTGTTGAAGCGAAA-CCAAAATCAACTCCCCGAGGTAGCAGCAACAAGAAGAA 886
Query 757 GAAAG 761
|||||
Sbjct 887 GAAAG 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85240525410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5