BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493412
Length=2178
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14820.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3236 0.0
> AT4G14820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:8507794-8510038 REVERSE LENGTH=2169
Length=2169
Score = 3236 bits (1752), Expect = 0.0
Identities = 2024/2153 (94%), Gaps = 28/2153 (1%)
Strand=Plus/Plus
Query 40 GCCGCAAATACAATTCTAGAGAAACTCTCATTCTGCAAATCACTCAACCACATCAAGCAA 99
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 31 GCCGCGAATACAATTCTAGAGAAACTCTCATTCTGCAAATCACTCAACCACATCAAGCAA 90
Query 100 CTCCATGCTCACATCCTTCGTACAGTGATCAACCACAAActcaactcctttctctttaat 159
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 91 CTCCATGCTCACATCCTCCGTACAGTGATCAACCACAAACTCAACTCCTTTCTCTTTAAC 150
Query 160 ctctccttctcttcttcctctatcaatctcagctacgctctcaatctcttctcatctATT 219
|||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 151 CTCTCCGTCTCTTCTTCCTCTATCAATCTCAGCTACGCTCTCAATGTCTTTTCATCTATT 210
Query 220 AGCCCTCTACCG---GAATCCATTGTCTTCAATTC-TCTTCTCCGGGATCTCTCTCGTTC 275
|||||| ||| |||||||| ||||||||| | | ||||||||||||| ||||||||
Sbjct 211 --CCCTCT-CCGCCTGAATCCATCGTCTTCAATCCAT-TTCTCCGGGATCTATCTCGTTC 266
Query 276 CGGTGAACCTAAAGCAACGATTCTGTTCTATCAGAGGATTAGACATGTTGGTGGTCGTTT 335
| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 267 CAGTGAACCTAGAGCGACGATTCTGTTCTATCAGAGGATTAGACATGTTGGTGGTCGTCT 326
Query 336 TGATCGAA-TCAGTTTCCCTCCGATTCTTAAAGCGGCTTCGAAAGTCTCGGCCTTGTTCG 394
||||| || |||| |||| ||||||||||||||| | ||| |||||||||||||||||||
Sbjct 327 TGATC-AATTCAGCTTCCTTCCGATTCTTAAAGCAGTTTCCAAAGTCTCGGCCTTGTTCG 385
Query 395 AGGGTATGGAGCTTCACGGCTTTGCGTTCAAGATTGCGACTTTGT-CTGACCCTTTTGTT 453
|||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||
Sbjct 386 AGGGTATGGAGCTTCACGGCGTTGCGTTCAAGATTGCGACTTTGTGC-GACCCTTTTGTT 444
Query 454 GAGACTGGTCTTATGGATATGTATGCGGCTTGTGGTAGAATTAATTACGCACGCAATGTG 513
||||||||| ||||||||||||| ||| |||||||||||||||| ||||| |||||||||
Sbjct 445 GAGACTGGTTTTATGGATATGTACGCGTCTTGTGGTAGAATTAACTACGCGCGCAATGTG 504
Query 514 TTCGACGAAATGTCTCAAAGAGATGTTGTTACGTGGAATACTATGATTGAGAGGTATTGC 573
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 TTCGACGAAATGTCGCATAGAGATGTTGTTACGTGGAATACTATGATTGAGAGGTATTGC 564
Query 574 CGATTCGGTCTTTTAGATGAAGCATTTAAGCTTTTTGAGGAGATGAAGGATTCTAATGTG 633
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 565 CGATTCGGTCTTGTAGATGAAGCCTTTAAGCTTTTTGAGGAGATGAAGGATTCTAATGTG 624
Query 634 ATGCCAGATGAGATGATTCTCTGTAACATTGTCTCGGCATGTGGTCGTACTGGAAATATG 693
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 625 ATGCCAGATGAAATGATTCTCTGTAACATTGTCTCTGCATGTGGTCGTACTGGGAATATG 684
Query 694 AGATATAACAGAG-TGATTTACGATTTTTTGGTAGAGAATGATGTTAGGATGGATACTCA 752
||||||||||||| | |||||||| |||||| |||| |||||||||||||||||||||||
Sbjct 685 AGATATAACAGAGCT-ATTTACGAGTTTTTGATAGAAAATGATGTTAGGATGGATACTCA 743
Query 753 TTTGTTGACTGCTCTTGTTACTATGTATGCTGGAGCTGGTTGTATGGATATGGCAATGGA 812
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 744 TTTGTTGACTGCTCTTGTTACTATGTATGCTGGAGCTGGTTGTATGGATATGGCAAGGGA 803
Query 813 GTTTTTTAGGAAGATGTCAGTGAGAAATTTGTTTGTTTCGACTGCCATGGTTTCTGGGTA 872
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 804 GTTTTTTAGGAAGATGTCAGTGAGAAACTTGTTTGTTTCGACTGCCATGGTTTCTGGGTA 863
Query 873 TTCAAAA-GCTGGGAGACTCGACGATGCTCGGGTTATATTTGACCAAACGGAAAGGAAAG 931
||||||| | |||||||||||| ||||||| ||||||||||||||||||||||| |||||
Sbjct 864 TTCAAAATG-TGGGAGACTCGATGATGCTCAGGTTATATTTGACCAAACGGAAAAGAAAG 922
Query 932 ATTTGGTTTGTTGGACCACAATGATTTCGGCTTATGCTGAAAGTGATCATCCTCAAGAAG 991
||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 923 ATTTGGTGTGTTGGACCACAATGATTTCGGCTTATGTTGAAAGTGATTATCCTCAAGAAG 982
Query 992 CTTTGAGAGTTTTTGAGGAAATGTGTTGCTCTGGGATCAAACCTGATGTGGTTACCATGT 1051
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 983 CTTTAAGAGTTTTTGAGGAAATGTGTTGCTCTGGGATCAAACCTGATGTGGTTAGCATGT 1042
Query 1052 TGAGTGTTATATCAGCTTGTG-TGAACCTTGGTACTCTGGATAAAGCGAAATGGGTTCAC 1110
| ||||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 1043 TCAGTGTTATATCTGCTTGTGCT-AACCTTGGTATTCTGGATAAAGCGAAATGGGTTCAC 1101
Query 1111 CGTTACACT-CATCTTAACGGGTTGGAGTCAGTGTTGCCAATAGATAATGCCCTCATTAA 1169
||| || | ||| ||||||||||||| |||| |||| ||||| ||||||||||||||||
Sbjct 1102 AGTTGCA-TACATGTTAACGGGTTGGAATCAGAGTTGTCAATAAATAATGCCCTCATTAA 1160
Query 1170 CATGTATGCGAAATGTGGAGGTTTAGATGCAGCAAGAGACGTGTTTGAGAAGATGCCAAA 1229
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1161 CATGTATGCGAAATGTGGAGGTTTGGATGCAACAAGAGACGTGTTTGAGAAGATGCCAAG 1220
Query 1230 GAGGAATGTAGTATCGTGGAGCTCTATGATCAATGCCTTTTCTATGCATGGGGAAGCCAG 1289
|||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 1221 GAGGAATGTAGTGTCGTGGAGCTCTATGATCAATGCGTTATCTATGCATGGAGAAGCCAG 1280
Query 1290 TGATGCGCTTAGCTTATTCGCCCAAATGAAACAGGAAAATGTCGAGCCCAATGAAGTTAC 1349
|||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1281 TGATGCACTTAGCTTATTTGCCCGAATGAAACAGGAAAATGTCGAGCCCAATGAAGTCAC 1340
Query 1350 TTTTGTGGGAGTGCTCTATGGTTGTAGCCACTCAGGACTAGTTGAAGAAGGTAAAAAGAT 1409
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 TTTTGTAGGAGTTCTCTATGGTTGTAGCCACTCAGGACTAGTTGAAGAAGGTAAAAAGAT 1400
Query 1410 CTTTGCATCAATGACTGATGAATACAACATTACTCCAAAAATTGAGCATTATGGATGCAT 1469
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1401 CTTTGCATCAATGACTGATGAATACAATATTACTCCAAAACTTGAGCATTATGGATGCAT 1460
Query 1470 GGTGGATCTCTTTGGCCGAGCTAATCTCTTACGAGAAGCTCTTGAGGTTATAGAATCAAT 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 GGTGGATCTCTTTGGCCGAGCTAATCTCTTACGAGAAGCTCTTGAGGTTATAGAATCAAT 1520
Query 1530 GCCAATGGCGCCTAATGTAGTCATATGGGGATCACTGATGTCAGCTTGTAGGGTCCACGG 1589
|||| | ||| |||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1521 GCCAGTAGCGTCTAATGTAGTCATATGGGGATCACTGATGTCAGCTTGTAGAATCCATGG 1580
Query 1590 TGAGCTTGAGTTAGGCGAATTAGCAGCCAAACGTATCCTCAAACTGGAGCCTGATCATGA 1649
|||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||||
Sbjct 1581 TGAGCTTGAGTTAGGCAAATTTGCAGCCAAACGTATCCTCGAGCTGGAGCCTGATCATGA 1640
Query 1650 CGGGGCTCTTGTGTTGATGTCCAATATATATGCTAGAGAACATAGATGGGACTACGTAAG 1709
||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1641 CGGGGCTCTTGTGTTAATGTCCAATATATACGCTAGAGAACAGAGATGGGAGGACGTAAG 1700
Query 1710 GATCATAAGATG-GATAATGGAGAAAAAGAAGGTGTTCAAGGAGAAAGGTCTTAGCCGGA 1768
|| ||||||| | | |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1701 GAACATAAGACGTG-TAATGGAGGAAAAGAATGTGTTCAAGGAGAAAGGTCTTAGCCGGA 1759
Query 1769 TTGACCAAAACGGGATATCGCACGAGTTTCTCATTGGTGACAAGAGGCATAAGCAATCAA 1828
||||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 1760 TTGACCAAAACGGGAAATCACACGAGTTTCTCATCGGTGACAAGAGACATAAGCAATCAA 1819
Query 1829 ATGAGATTTATACGAAGCTATACGAGGTTGTAAGTAAACTGAAGCTAGCCGGTTACGTTC 1888
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1820 ATGAGATTTATGCGAAGCTAGACGAGGTTGTAAGTAAACTGAAGCTAGCCGGTTACGTTC 1879
Query 1889 CAGA-TGGTGGTAGCGTTTTGGTGGATGTAGAGGAGGAAGAAAAGAAGGATTTGGTTCTA 1947
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1880 CAGACTG-TGGTAGCGTTTTGGTGGATGTAGAGGAGGAAGAAAAGAAGGATTTGGTTCTA 1938
Query 1948 TGGCATAGCGAAAAGCTTGCGCTCTGCTTCGGTCTGATGAATAAGGAAAAAGAAGAAGAG 2007
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1939 TGGCATAGCGAAAAGCTCGCGCTCTGCTTCGGTCTGATGAATGAGGAAAAAGAAGAAGAG 1998
Query 2008 AAAGGCTCGTGCGGTGTTATTAGAATAGTGAAGAATCTAAGGGTGTGTGAGGATTGTCAC 2067
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 AAAGACTCGTGCGGTGTTATTAGAATAGTGAAGAATCTAAGGGTGTGTGAGGATTGTCAC 2058
Query 2068 ACGTT-CTTCAAGCTGGTCTCTAAAGTGTATGAACTG-GAGATCATAGTGAGAGATCGAA 2125
| || ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 2059 -CTTTTCTTCAAGCTCGTCTCTAAAGTGTATGAAC-GAGAGATCATAGTGAGAGATCGAA 2116
Query 2126 CTAGGTTTCACCGTTATAAAGACGGTCTGTGTTCTTGCAGAGATTACTGGTGA 2178
||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2117 CTAGGTTTCACTGTTATAAAAACGGTCTGTGTTCTTGCAGAGATTACTGGTGA 2169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108031572840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5