BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493413
Length=463
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14819.1 | Symbols: | Protein of unknown function (DUF1677)... 667 0.0
> AT4G14819.1 | Symbols: | Protein of unknown function (DUF1677)
| chr4:8507263-8507789 FORWARD LENGTH=527
Length=527
Score = 667 bits (361), Expect = 0.0
Identities = 418/445 (94%), Gaps = 5/445 (1%)
Strand=Plus/Plus
Query 20 CATAAATTCATAAACGTTGAAACATTTTTATTTCTCGATT-GGAGCTAAAGATTGGTCAA 78
||||| |||| |||||||||| || |||| ||||||| || ||||| ||||| |||||
Sbjct 43 CATAATTTCAAAAACGTTGAATCA-TTTTCTTTCTCG-TTCAGAGCTCTAGATTAGTCAA 100
Query 79 TAATGGAGATTGAATCGGTGACGTGCGAATGTTGCGGCTTAATGGAAGATTGTACACAAC 138
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 101 TAATGGAGATTGAATCGGTGACGTGCGAGTGTTGCGGCTTAATGGAAGATTGTACACAAC 160
Query 139 ACTACATTAGTAAAGTCAAAGCTAACTTCGCCGGAAAATGGCTTTGTGGGCTTTGCTCCG 198
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 161 ACTACATTAGTAAAGTCAAAGCTAACTTCGCCGGGAAATGGCTTTGTGGGCTTTGCTCCG 220
Query 199 AGGCCGTAAGCGACGAATTTAGCCGTAGTTCGAAGACGGTGGAGGAAGCTGTTAATGCTC 258
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 221 AGGCGGTAAGCGACGAATTCAGCCGTAGTTCGAAGACGGTGGAGGAAGCTGTTAATGCAC 280
Query 259 ACGTGTCGTTTTGTGGCAAGTTTAACGCCAACCCCGCAGAACTTGTCGCCGACGGCATGA 318
|| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 281 ACATGTCGTTTTGTGGCAAGTTTAACGCTAACCCCGCAGAACTCGTCGCCGACGGCATGA 340
Query 319 GACAGATGCTACGAAGGAGGTCCGGTGAGTTATCGCCGAAGATGGCCAAGAAGTTCGGAA 378
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 341 GACAGATGCTACGAAGGAGGTCCGGTGAGTTATCACCGAAGATGTCCAAGAAGTTCGGAA 400
Query 379 GATCTAACACCACATAATTTGTGTAGCCTATCTTTTTCTCACTTTTTGCCTTAAAGTTTT 438
||||||||||||||||||| ||||| | ||||||||||||||||| |||||||||||||
Sbjct 401 GATCTAACACCACATAATTCATGTAGTC-ATCTTTTTCTCACTTTT-GCCTTAAAGTTTT 458
Query 439 GGCTAATGTAAAATATAATAAAAGT 463
|||||||||||| ||||||||||||
Sbjct 459 GGCTAATGTAAAGTATAATAAAAGT 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22067541811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5