BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493415
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14805.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 880 0.0
> AT4G14805.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:8502374-8503199
REVERSE LENGTH=660
Length=660
Score = 880 bits (476), Expect = 0.0
Identities = 592/646 (92%), Gaps = 15/646 (2%)
Strand=Plus/Plus
Query 18 CACCGTCGTCTTCATCCTCATACTCGCGATCACC-T-T-CTCCTCCTCCGCCGTATCCGC 74
||||| ||| ||||||||||||||| |||||||| | | |||||||||||||||| ||||
Sbjct 15 CACCGGCGTTTTCATCCTCATACTCACGATCACCTTCTCCTCCTCCTCCGCCGTAACCGC 74
Query 75 GA--C-GCAAGCACCTTCGTCTTCTCCACCGATTCCGACTTGTACGGAGGAGCTCGTCAT 131
|| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 75 GACGCAGCAAGCACCTTCGTCTTCTCCACCGGTTCTGACTTGTACGGAGGAGCTCGTCAT 134
Query 132 GTTCTCTCCTTGCCTTCCTTACGTCTCCGCTCCACCAAACAACATGTCAGAGACTCCGGA 191
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 135 GTTCTCTCCTTGCCTTCCTTACGTCTCCTCTCCACCAAACAATATGTCAGAGACTCCGGA 194
Query 192 TCCTATTTGCTGCTCCGTTTTTACCTCCTCCGTTCATTTTAGCGCCGGAAACTGCCTCTG 251
||||||||||||||| |||||||||||||||||||||| |||| |||||||||| |||||
Sbjct 195 TCCTATTTGCTGCTCGGTTTTTACCTCCTCCGTTCATTCTAGCACCGGAAACTGTCTCTG 254
Query 252 TTATCTTCTCCGACAGCCGATGATCCTCGGATTCCCGTTGGATAGATCTCGATTGATTTC 311
|||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 255 TTATCTTCTCCGGCAGCCGATGATCCTTGGATTCCCGTTGGATAGATCTAGATTGATTTC 314
Query 312 TATTTCCCAGATCTGTACCGATCAGAACTCCTACGAATCTTTCGAATCTCTCTGTTCGCT 371
| |||| |||||||||||||||||||| ||| | |||||||||||||||||||||||| |
Sbjct 315 TCTTTCTCAGATCTGTACCGATCAGAATTCCGAAGAATCTTTCGAATCTCTCTGTTCGGT 374
Query 372 ATCAGAGTCGCCGGAGCTTCCGCCGCTTCAGAGTATTCAGTTCACAAATCCGTTTGTTTC 431
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 375 ATCAGAGTCGCCGGAGCTTCCTCCGCTTCAGAGTATTCAGTTCACAAATCCGTTTGTTTC 434
Query 432 CGGTAATCACGATTCCGCTTCTCCTCCATCGGTCGGCTTAGCACCGGAAGTTTCACCAAG 491
||||||| | | ||| || ||||||| ||| |||| ||||||||||||||||||||||||
Sbjct 435 CGGTAATAATGTTTCTGCCTCTCCTCAATCAGTCGACTTAGCACCGGAAGTTTCACCAAG 494
Query 492 CTCCGATCAATTCTCACCGGAAACAGccaccatagcaccaccaccaccaccaccaG-AC- 549
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 495 CTCCGATCTATTCTCACCGGAAACAGCCACCCTAGCACCACCACCACCACCACCACCACT 554
Query 550 ----G--C-ACAATACATCTCAAGCGACTCTCAAAAGATCAGAAACTTCTGGTTTCCATC 602
| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 555 ACCAGTTCTACAATACTTCTCAAGCGACTCTCTCAAGATCAGAAACTTCTGGTTTCCATC 614
Query 603 GACTATCATCATGACTTTTGCCTCTTCTATTCTCACTCGGATCTGA 648
|||||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 615 GACTATCATCATGACTTTTGCCACTTCTATTCTCGCTCGTATCTGA 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31295873581
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5