BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493416
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22630.1 | Symbols: PBD1, PRCGB | 20S proteasome beta subuni... 662 0.0
AT4G14800.2 | Symbols: PBD2 | 20S proteasome beta subunit D2 | ... 571 3e-162
> AT3G22630.1 | Symbols: PBD1, PRCGB | 20S proteasome beta subunit
D1 | chr3:8009540-8010844 REVERSE LENGTH=854
Length=854
Score = 662 bits (358), Expect = 0.0
Identities = 511/586 (87%), Gaps = 6/586 (1%)
Strand=Plus/Plus
Query 71 GAAGATGGAGTGTGTATTTGGTCTAGTTGGGAATGGATTCGCTATCGTGGCGGCGGATAC 130
|||||||||||||||||| ||||| ||||||||||||||||| ||||| || || |||||
Sbjct 67 GAAGATGGAGTGTGTATTCGGTCTTGTTGGGAATGGATTCGCCATCGTTGCTGCTGATAC 126
Query 131 ATCAGCAGTTCACAGTATTCTTCTTCACAAGAACAAGGAGGACAAGATCATGGTTCTTGA 190
||| || ||||| ||||| ||||||||||| ||||| || |||||||||||||| |||||
Sbjct 127 ATCGGCGGTTCATAGTATCCTTCTTCACAAAAACAACGAAGACAAGATCATGGTACTTGA 186
Query 191 CTCTCACAAGCTCGTCGCCGCTAGTGGCGAGCCTGGTGATCGGGTTCAGTTTACGGAGTA 250
||| |||||||| || || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 187 CTCACACAAGCTTGTTGCTGCTAGTGGCGAGCCTGGTGACCGGGTTCAGTTTACGGAGTA 246
Query 251 TGTTCAGAAGAATGTGTCAC-TGTATCAGTTTC-GTAATGGGCTCCCTTTGACTACTGCT 308
||||||||||||||||| | |||| || ||| | ||||| |||| |||||||| ||
Sbjct 247 CGTTCAGAAGAATGTGTC-CTTGTA-CAAATTCAGAAATGGAATCCCGTTGACTACCGCC 304
Query 309 GCTGCTGCTAACTTCACTCGTGGAGAGCTCGCTACTGCTTTGAGAAAGAATCCGTATTCG 368
|||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 305 GCTGCTGCCAATTTCACTCGCGGAGAGCTCGCTACTGCTTTGAGGAAGAATCCGTATTCG 364
Query 369 GTGAACATCCTGATGGCTGGATACGACAAAGAAG-CCGGGGCATCTCTATACTACATTGA 427
||||| |||||||||||||| || ||| | | || | || ||||| || |||||||| ||
Sbjct 365 GTGAATATCCTGATGGCTGGCTATGACGATG-AGTCTGGTGCATCACTTTACTACATCGA 423
Query 428 CTACATTGCAACTCTCCACAAGGTTGATAAGGGAGCTTTCGGTTACGGCTCATACTTCTC 487
||||||||||||||| ||||| || || ||||||||||| ||||||||||| ||||||||
Sbjct 424 CTACATTGCAACTCTTCACAAAGTCGACAAGGGAGCTTTTGGTTACGGCTCCTACTTCTC 483
Query 488 TCTCTCTACAATGGACAGACACTACCGCAGCGACATGTCTGTTGAAGAAGCCATTGAATT 547
||||| || |||||||| || |||||||| ||||||||||| ||||||||||||||| |
Sbjct 484 CCTCTCCACGATGGACAGGCATTACCGCAGTGACATGTCTGTAGAAGAAGCCATTGAACT 543
Query 548 GGTCGACAAATGCATACTCGAGATCAGGTCAAGGCTGGTCATTGCACCACCAAACTTTGT 607
|| |||||||||||||| |||||| ||||||| || || |||||||||||||||||||
Sbjct 544 AGTTGACAAATGCATACTTGAGATCCGGTCAAGACTCGTTGTTGCACCACCAAACTTTGT 603
Query 608 GATCAAGATTGTCGACAAGGATGGAGCCCGTGAGTACGATTGGCGT 653
|||||||||||| ||||| |||||||| ||||| |||| |||||||
Sbjct 604 GATCAAGATTGTTGACAAAGATGGAGCTCGTGATTACGCTTGGCGT 649
> AT4G14800.2 | Symbols: PBD2 | 20S proteasome beta subunit D2
| chr4:8500266-8502240 FORWARD LENGTH=962
Length=962
Score = 571 bits (309), Expect = 3e-162
Identities = 432/485 (89%), Gaps = 33/485 (7%)
Strand=Plus/Plus
Query 356 GAATCCGTATTCGGTGAACATCCTGATGGCTGGATACGACAAAGAAGCCGGGGCATCTCT 415
|||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 462 GAATCCATATTCGGTGAACATCCTGATGGCTGGCTATGACAAAGAAGCCGGCGCATCTCT 521
Query 416 ATACTACATTGACTACATTGCAACTCTCCACAAGGTTGATAAGGGAGC-TTTCGGTTACG 474
|||||||||||||||||||||||| ||||||||||||||||||||||| ||| || ||||
Sbjct 522 ATACTACATTGACTACATTGCAACCCTCCACAAGGTTGATAAGGGAGCATTT-GGATACG 580
Query 475 GCTCATACTTCTCTCTCTCTACAATGGACAGACACTACCGCAGCGACATGTCTGTTGAAG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GCTCATACTTCTCTCTCTCTACAATGGACAGACACTACCGCAGCGACATGTCTGTTGAAG 640
Query 535 AAGCCATTGAATTGGTCGACAAATGCATACTCGAGATCAGGTCAAGGCTGGTCATTGCAC 594
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 AAGCCATTGAATTGGTGGACAAATGCATACTCGAGATCAGGTCAAGGCTGGTCATTGCAC 700
Query 595 CACCAAACTTTGTGATCAAGATTGTCGACAAGGATGGAGCCCGTGAGTACG-ATTGGCGT 653
||||||||||||| ||||||||||| |||||||| |||||||||||||||| || |||||
Sbjct 701 CACCAAACTTTGTTATCAAGATTGTTGACAAGGACGGAGCCCGTGAGTACGGAT-GGCGT 759
Query 654 ATCACCACTGCTGATGCCTGAGTTGTTTT--TT------AT--GT---T--A-----CTC 693
|||| |||||||||||||| ||||||||| || || || | | |||
Sbjct 760 ATCAGCACTGCTGATGCCTAAGTTGTTTTCATTGTGTTTATTAGTCCATTTATGTTACTC 819
Query 694 AGCTCACATTTAC-TTCTCTATTGAACTACATGCTCCCTGGATGTTAAAGTTCCTAGATA 752
||||||||||| |||||| ||||||| || ||||||||||| ||||||||||||||||
Sbjct 820 GGCTCACATTTATATTCTCTGTTGAACTTCAAGCTCCCTGGATATTAAAGTTCCTAGATA 879
Query 753 ATGATGAT-AT--GCATGTGTTGAACTTTTTCTTCTATTTCCTTATAGCGTCTATGAAGC 809
|||||||| || ||||||||||||||||||||| | |||||| |||| ||||||||
Sbjct 880 ATGATGATGATATGCATGTGTTGAACTTTTTCTT-T----CCTTATTGCGTATATGAAGC 934
Query 810 AAAAG 814
|||||
Sbjct 935 AAAAG 939
Score = 508 bits (275), Expect = 2e-143
Identities = 302/315 (96%), Gaps = 2/315 (1%)
Strand=Plus/Plus
Query 46 AAGAGAACTGAGAAGAAACAGATCTGAAGATGGAGTGTGTATTTGGTCTAGTTGGGAATG 105
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 AAG-GAACTGAGAAGAAACAGATCTGAAGATGGAGTGTGTATTTGGTCTAGTTGGGAATG 163
Query 106 GATTCGCTATCGTGGCGGCGGATACATCAGCAGTTCACAGTATTCTTCTTCACAAGAACA 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 GATTCGCTATCGTGGCGGCGGATACATCAGCAGTTCACAGTATTCTTCTTCACAAGAACA 223
Query 166 AGGAGGACAAGATCATGGTTCTTGACTCTCACAAGCTCGTCGCCGCTAGTGGCGAGCCTG 225
| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 224 AAGAGGACAAGATCATGACTCTTGACTCTCACAAGCTCGTCGCCGCTAGTGGTGAGCCTG 283
Query 226 GTGATCGGGTTCAGTTTACGGAGTATGTTCAGAAGAATGTGTCACTGTATCAGTTTCGTA 285
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 GTGACCGGGTTCAGTTTACGGAGTATGTTCAGAAGAATGTGTCACTGTATCAGTTTCGTA 343
Query 286 ATGGGCTCCCTTTGACTACTGCTGCTGCTGCTAACTTCACTCGTGGAGAGCTCGCTACTG 345
||||| | ||||||| ||||||||||||||||||||||||||||||||| || || ||||
Sbjct 344 ATGGGATTCCTTTGAGTACTGCTGCTGCTGCTAACTTCACTCGTGGAGAACTTGCCACTG 403
Query 346 CTTTGAGAAAG-AAT 359
||||||||||| |||
Sbjct 404 CTTTGAGAAAGGAAT 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39634741983
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5