BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493420
Length=2103
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14770.1 | Symbols: TCX2, ATTCX2 | TESMIN/TSO1-like CXC 2 | ... 1598 0.0
AT3G22760.1 | Symbols: SOL1 | Tesmin/TSO1-like CXC domain-conta... 409 7e-113
AT3G22780.1 | Symbols: TSO1, ATTSO1 | Tesmin/TSO1-like CXC doma... 383 4e-105
> AT4G14770.1 | Symbols: TCX2, ATTCX2 | TESMIN/TSO1-like CXC 2
| chr4:8481370-8484825 REVERSE LENGTH=2177
Length=2177
Score = 1598 bits (865), Expect = 0.0
Identities = 967/1016 (95%), Gaps = 7/1016 (1%)
Strand=Plus/Plus
Query 1092 TTACTGTGAATGCTTTGCTGCTGGAGTCTATTGCATAGAGCCATGTTCATGTATAGACTG 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TTACTGTGAATGCTTTGCTGCTGGAGTCTATTGCATAGAGCCATGTTCATGTATAGACTG 1220
Query 1152 CTTCAATAAACCTATCCATGAAGACGTTGTCCTGGCGACTCGCAAACAGATTGAATCTCG 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 CTTCAATAAACCTATCCATGAAGACGTTGTCCTGGCGACTCGCAAACAGATTGAATCTCG 1280
Query 1212 GAATCCACTTGCATTTGCTCCTAAAGTCATTAGGAACTCTGAGTCGGTTCTAGAAACCGG 1271
|||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 1281 GAATCCACTTGCATTTGCTCCTAAAGTCATTAGGAACTCTGACTCAGTTCAAGAAACCGG 1340
Query 1272 GGATGATGCAAGCAAAACTCCAGCTTCTGCGCGCCATAAACGTGGCTGCAACTGCAAGAA 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 GGATGATGCAAGCAAAACTCCAGCTTCTGCGCGCCATAAACGTGGCTGCAACTGCAAGAA 1400
Query 1332 ATCAAACTGTTTGAAAAAATATTGCGAATGCTATCAGGGTGGGGTGGGCTGTTCCATAAA 1391
|||||||||| |||| ||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 1401 ATCAAACTGTCTGAAGAAATACTGTGAATGCTATCAGGGTGGTGTGGGCTGTTCCATAAA 1460
Query 1392 CTGTAGATGTGAAGGATGTAAGAACGCATTTGGCCGCAAAGATGGGTCTTCCATTGACAT 1451
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1461 CTGTAGATGTGAAGGATGTAAGAACGCATTCGGCCGGAAAGATGGGTCTTCCATTGACAT 1520
Query 1452 GGAAGCAGAACAAGAGGAGGAAAATGAAACATCTGAGAAAAGCAGAACAGCCAAA-GCCC 1510
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1521 GGAAGCCGAACAAGAAGAGGAAAATGAAACATCTGAGAAAAGCAGAACAGCCAAAAGCC- 1579
Query 1511 AACAGAACATTGAGGTTTTAATGAGAAAGGAGGCGAGGTCCGATCTACCTACGACACCAA 1570
|||| |||| ||||||||||||||||||||| ||| || | |||||||||||||||||
Sbjct 1580 AACAAAACACTGAGGTTTTAATGAGAAAGGACATGAGTTCTGCTCTACCTACGACACCAA 1639
Query 1571 CGCCGATTTACAGACCAGAACTGGTTCAACTACCTTTCTCATCATCTAAGAATAGAATGC 1630
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1640 CGCCGATTTACAGACCAGAACTGGTTCAACTACCTTTCTCATCATCTAAGAACAGGATGC 1699
Query 1631 CTCCTCCACAGTCTCTTCTTGGAGGTGGATCTTCCTCAGGGATATTCAACAGTCAATATT 1690
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1700 CTCCTCCACAGTCTCTTCTTGGAGGTGGATCTTCCTCAGGGATATTTAACAGTCAATATC 1759
Query 1691 TAAGAAAACCAGACATAAGTTTGACTCAATCCCGGATCAAGAAGTCATTCGAGACAGTTG 1750
|||||||||||||||| |||||| |||||||| | ||| ||||||||||||||||||| |
Sbjct 1760 TAAGAAAACCAGACATTAGTTTGTCTCAATCCAGAATCGAGAAGTCATTCGAGACAGTCG 1819
Query 1751 CAGAGGATGGAGCTGAAGAAATGCCTGAGATTCTCATCCACTCCCCTATACCTAACATCA 1810
||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1820 CAGTTGATGGAGCTGAACAAATGCCTGAGATTCTCATCCATTCCCCTATACCTAACATCA 1879
Query 1811 AGAGTGTCTCTCCCAACGGCAAA-AGGGTCTCCCCTCCTCATATGGAGTCATCTAGCTCA 1869
||||||||||||||||||| ||| |||||||| |||||||||||||| ||||||||||||
Sbjct 1880 AGAGTGTCTCTCCCAACGG-AAAGAGGGTCTCTCCTCCTCATATGGAATCATCTAGCTCA 1938
Query 1870 GGGTCAATCTTAGGGAGAAGAAGTGGCGGGCGGAAACTGATATTGCAGTCGATTCCATCG 1929
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1939 GGCTCAATCTTAGGGAGAAGAAATGGCGGGCGGAAACTGATATTGCAGTCGATTCCATCG 1998
Query 1930 TTTCCTTCTCTCACTCCCCAACACTGAAAGCATTTGGTGTTGTGTAGCTATGGAAATTCT 1989
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1999 TTTCCTTCTCTCACTCCCCAACACTGAAAGCATTTGGTGTTGTGTAGCTAAGGAAATTCT 2058
Query 1990 TTGAAtttttttCAAGGTGAAAGATGATA-AATGTCAACTTCTAGTTGGTAGTAAGTTAG 2048
|||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 2059 TTGAATCTTTTTCAAGGTGAAAGATGATATAA-GTCAACTTCTAGTTGGTAGTAAGTTAG 2117
Query 2049 CACTTAGCACACTTT-AAGTCTGTAGTCTAGTGGTTGTGTAATAAAGATGTCAATC 2103
||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct 2118 CACTTAGCACACTTTTAAATCTGTAGTCTAGTCGTTGTGTAATAAAGATGTCAATC 2173
Score = 1297 bits (702), Expect = 0.0
Identities = 989/1118 (88%), Gaps = 57/1118 (5%)
Strand=Plus/Plus
Query 1 ATGGATACCCCTCAGAAGAGTGTTACTCAGATCGGAACTCCAATTTCCAAATCCAGATTT 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATACCCCTCAGAAGAGTATTACTCAGATCGGAACTCCAATTTCCAAATCCAGATTC 60
Query 61 GAGGATTCTCCAGTGTTCAATTACATAAACAGTTTGTCTCCAATAAGACCAGTTAGATCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GAGGATTCTCCAGTGTTCAATTACATAAACAGTTTGTCTCCAATAAGACCAGTCAGATCC 120
Query 121 ATACCAAATCCTAACCAATTTAGCGCTCTGAATTTCACTTCTCCTCCCTCTGTTTTCACT 180
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 121 ATACCAAATCCTAACCAATTTAGCTCTCTGAATTTCACTTCCCCTCCCTCTGTTTTCACT 180
Query 181 TCACCACACCTAACTTCTTCTCACAAAGAATCTC-GATTCTTCAAAACTCACAACTCTTC 239
||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 181 TCACCTCACCTAACTTCTTCTCACAAAGAATC-CAGATTCTTCAAAACTCACAACTCTTC 239
Query 240 TTCTTCTGATCCTACCAATCCCGTTGAATCTCGAGAAGATGAGTCTACTTCTTATGAAGA 299
||||||||||||||||||| |||||||||||| |||||| |||||||||||| |||||||
Sbjct 240 TTCTTCTGATCCTACCAATTCCGTTGAATCTCAAGAAGACGAGTCTACTTCTCATGAAGA 299
Query 300 TGTTGTAGCAGAAGGAGAAGAAGATACAAAAGATCTCAATATAGATTCTTCCATGCGAGA 359
||| ||||||||||||||| |||||||| ||| || |||||| || |||||||||
Sbjct 300 AGTTCCAGCAGAAGGAGAAGA---TACAAAAGGTCTTAACATAGATGATTGCATGCGAGA 356
Query 360 AGAAG----A----AA-CAAATCGTGATGATTCTGTTTCTTCACCTTGTGGTGGAGATAC 410
||||| | || | |||| ||||||||| ||| ||||||| ||||||||| ||||
Sbjct 357 AGAAGCTTCAGTTGAAACGAATCTTGATGATTCCGTTGCTTCACCGTGTGGTGGAAATAC 416
Query 411 TACCGATCTTTCGCTTGTTCCATACGCTCCT-CT--AGGAGAGAATGGTACTTCTGAGAA 467
||| ||||||||||||||||| ||||||||| || ||||||| ||||| ||| |||| |
Sbjct 417 TACTGATCTTTCGCTTGTTCCTTACGCTCCTACTCGAGGAGAGGATGGTTCTTGTGAGGA 476
Query 468 TGCA-GGAATGGAGCTGCAGAAGGTGTATGATAATGTTCAGGGGAAAACCGAAACTCCGG 526
| | |||||||||||||||||| || |||||||||||||||||||||| ||||||||||
Sbjct 477 TA-ATGGAATGGAGCTGCAGAAGATGCATGATAATGTTCAGGGGAAAACTGAAACTCCGG 535
Query 527 ATTGGGAAAGTTTGATTTCAGATGCTTCTGAGCTGTTGATCTTCGACTCACCTGATGCAT 586
||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 536 ATTGGGAAAGTTTGATTGCAGATGCTTCTGAGCTGTTAATCTTTGACTCACCTGATGCTT 595
Query 587 CAGAGGCTTTTAGATGTTTTATGATGCAGAGAGCATCAAACTCTGAAGCACGTTTTAGCA 646
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 596 CTGAGGCTTTTAGATGCTTTATGATGCAGAGAGCATCAAACTCTGAAGCACGTTTTAGAA 655
Query 647 ATGGTGTTGAGGTGCAAACAATGCAGCCCGATTCAAACAAGGAACCACAGTCCTCGGATG 706
||||||| ||| |||||||||||||| |||||||||||||||||| ||||| || |||
Sbjct 656 ATGGTGTGGAGAAGCAAACAATGCAGCACGATTCAAACAAGGAACCGGAGTCCGCGAATG 715
Query 707 CGATTCCTTATGAGGTACACTCAGGAATAACATCTCAAGCTGTTTCACTCTTGCATCGCG 766
||||||||||||||| | | | | | ||| || || ||| | | | | |
Sbjct 716 CGATTCCTTATGAGG--C--T--G---T----T-TCA--CTCTTGCAC-C--G--T-G-G 752
Query 767 GTATAAGAAGACGCTGCCTTGACTTTGAGATGCC-GGGAAATAAGCAAAC-T-AAC--A- 820
|||||||||||| || ||||||||||||||||| ||||| ||||||||| | || |
Sbjct 753 -TATAAGAAGACGTTGTCTTGACTTTGAGATGCCCGGGAA-TAAGCAAACATCAAGTGAG 810
Query 821 A-T------GCGGCTTGTGAATCTTCATCGAGATGTGTTGTACCGAGTATTGGTCTTCAT 873
| | |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 811 AATAACACCGCGGCTTGTGAATCCTCTTCGAGATGTGTTGTACCGAGTATTGGTCTTCAT 870
Query 874 CTAAACGCCATTTTAATGTCCTCAAAGGACTGTAAAAGCAATGTCAGTCATGATTACTCA 933
||||| |||||||||||||| |||||||||||||||| |||||| | ||| |||||||||
Sbjct 871 CTAAATGCCATTTTAATGTCTTCAAAGGACTGTAAAACCAATGTTACTCAAGATTACTCA 930
Query 934 TGTTCTGGGAAGATACAAGTGGGTTTACAAAGCTCCATCTCTACACTGCAAGAAACTTTG 993
||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 931 TGTTCTGCGAATATACAAGTGGGTTTACAAAGGTCCATCTCTACACTGCAAGATTCTTTG 990
Query 994 GACCAAACAGAAAATGAAACCCGGGAAGATGCAGATCAAGATGTCCCCGTTGAACCAGCC 1053
||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct 991 GACCAAACAGAAAATGAAATCCGGGAAGATGCAGATCAAGATGTTCCTGTTGAACCAGCT 1050
Query 1054 TTGCAAGAGTTAAATTTGAGCAGCCCTAAGAAGAAGAG 1091
||||||||||||||||||||||||||||||||||||||
Sbjct 1051 TTGCAAGAGTTAAATTTGAGCAGCCCTAAGAAGAAGAG 1088
> AT3G22760.1 | Symbols: SOL1 | Tesmin/TSO1-like CXC domain-containing
protein | chr3:8044455-8047530 FORWARD LENGTH=2146
Length=2146
Score = 409 bits (221), Expect = 7e-113
Identities = 308/351 (88%), Gaps = 2/351 (1%)
Strand=Plus/Plus
Query 1092 TTACTGTGAATGCTTTGCTGCTGGAGTCTATTGCATAGAGCCATGTTCATGTATAGACTG 1151
||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | ||
Sbjct 1187 TTACTGTGAATGCTTTGCTGCTGGATTTTATTGCATAGAGCCATGTTCATGTATAAATTG 1246
Query 1152 CTTCAATAAACCTATCCATGAAGACGTTGTCCTGGCGACTCGCAAACAGATTGAATCTCG 1211
|||||| |||||||||||| |||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1247 CTTCAACAAACCTATCCATAAAGATGTTGTCCTGGCTACTCGCAAACAGATTGAATCCCG 1306
Query 1212 GAATCCACTTGCATTTGCTCCTAAAGTCATTAGGAACTCTGAGTCGGTTC-TAGAAACCG 1270
||||||||||||||||||||||||||||| || ||||| || || | | | ||| |
Sbjct 1307 CAATCCACTTGCATTTGCTCCTAAAGTCATCAGAAACTCAGATTCCAT-CATTGAAGTTG 1365
Query 1271 GGGATGATGCAAGCAAAACTCCAGCTTCTGCGCGCCATAAACGTGGCTGCAACTGCAAGA 1330
| || |||||||| |||||||||||||| ||||| || ||||| ||||| ||||||||||
Sbjct 1366 GTGAGGATGCAAGTAAAACTCCAGCTTCAGCGCGACACAAACGAGGCTGTAACTGCAAGA 1425
Query 1331 AATCAAACTGTTTGAAAAAATATTGCGAATGCTATCAGGGTGGGGTGGGCTGTTCCATAA 1390
||||||||||| |||| ||||| || |||||||||||||| || || || ||||| ||||
Sbjct 1426 AATCAAACTGTCTGAAGAAATACTGTGAATGCTATCAGGGCGGAGTTGGTTGTTCTATAA 1485
Query 1391 ACTGTAGATGTGAAGGATGTAAGAACGCATTTGGCCGCAAAGATGGGTCTT 1441
|||||||||||||||||||||| || ||||||||| | |||||||||||||
Sbjct 1486 ACTGTAGATGTGAAGGATGTAAAAATGCATTTGGCAGAAAAGATGGGTCTT 1536
> AT3G22780.1 | Symbols: TSO1, ATTSO1 | Tesmin/TSO1-like CXC domain-containing
protein | chr3:8048802-8052260 FORWARD LENGTH=2415
Length=2415
Score = 383 bits (207), Expect = 4e-105
Identities = 368/444 (83%), Gaps = 18/444 (4%)
Strand=Plus/Plus
Query 1092 TTACTGTGAATGCTTTGCTGCTGGAGTCTATTGCATAGAGCCATGTTCATGTATAGACTG 1151
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 1364 TTACTGTGAATGCTTTGCTGCTGGGGTTTATTGCATAGAGCCATGTTCATGTATAGATTG 1423
Query 1152 CTTCAATAAACCTATCCATGAAGACGTTGTCCTGGCGACTCGCAAACAGATTGAATCTCG 1211
|||||| ||||||||||||||||| ||| |||| || ||||||||||||||||| ||
Sbjct 1424 CTTCAACAAACCTATCCATGAAGAAACTGTTTTGGCTACCCGCAAACAGATTGAATCCCG 1483
Query 1212 GAATCCACTTGCATTTGCTCCTAAAGTCATTAGGAACT-CTGAGTCGGTTC-TAGAAACC 1269
||||||||||||||||||||||||||||| | ||| | | || || || | ||| |
Sbjct 1484 AAATCCACTTGCATTTGCTCCTAAAGTCATCA-GAAATGCAGATTC-CATCATGGAAGCT 1541
Query 1270 GGGGATGATGCAAGCAAAACTCCAGCTTCTGCGCGCCATAAACGTGGCTGCAACTGCAAG 1329
| |||||||| || ||||| || |||||||| || || |||||||||||||||||||||
Sbjct 1542 AGTGATGATGCCAGTAAAACCCCGGCTTCTGCACGACACAAACGTGGCTGCAACTGCAAG 1601
Query 1330 AAATCAAACTGTTTGAAAAAATATTGCGAATGCTATCAGGGTGGGGTGGGCTGTTCCATA 1389
|||||||||||| |||| ||||| || ||||||||||||||||| || |||||||||||
Sbjct 1602 AAATCAAACTGTATGAAGAAATACTGTGAATGCTATCAGGGTGGAGTCGGCTGTTCCATG 1661
Query 1390 AACTGTAGATGTGAAGGATGTA-AGAACGCATTTGGCCGCAAAGATGGGTCTTC-CATTG 1447
||||||||||| |||||||| | | || | ||| ||| | ||||||||||||| | |||
Sbjct 1662 AACTGTAGATGCGAAGGATGCACA-AATGTATTCGGCAGAAAAGATGGGTCTTTAC-TTG 1719
Query 1448 --A-CATGGAA-GCAGAACAAGAGGAGGAAA-ATGAAACATCTGAGAAAAGCAGAACAGC 1502
| ||||||| ||| ||| ||||||| || | || |||| ||||||||| | | |||
Sbjct 1720 TTATCATGGAAAGCA-AACTAGAGGAG-AATCAGGAGACATATGAGAAAAG-A-AT-AGC 1774
Query 1503 CAAAGCCCAACAGAACATTGAGGT 1526
||| |||||| ||| | |||||
Sbjct 1775 AAAAATCCAACACAACGTCGAGGT 1798
Score = 60.2 bits (32), Expect = 8e-08
Identities = 48/55 (87%), Gaps = 4/55 (7%)
Strand=Plus/Plus
Query 756 CTTGCATCGCGGT---ATAAGAAGACGCTGCCTTGACTTTGAGATGCC-GGGAAA 806
||||||||| ||| || |||||||||||||||||||||||||||| ||||||
Sbjct 911 CTTGCATCGTGGTGGCATGCGAAGACGCTGCCTTGACTTTGAGATGCCAGGGAAA 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104266531965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5